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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237220 (101 seq.)
>W1710799903
LJVG01000026
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
23052
22977
-
Asn
GTT
[ENA]
¡û
>W1710799904
LJVG01000026
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
22872
22797
-
Asn
GTT
[ENA]
¡û
>W1710799905
LJVG01000026
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
22692
22617
-
Asn
GTT
[ENA]
¡û
>W1710803956
LJYX01000009
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
117309
117234
-
Asn
GTT
[ENA]
¡û
>W1710803957
LJYX01000009
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
117131
117056
-
Asn
GTT
[ENA]
¡û
>W1710803958
LJYX01000009
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
116951
116876
-
Asn
GTT
[ENA]
¡û
>W131177234
ARKQ01000033
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
176520
176595
+
Asn
GTT
[ENA]
¡û
>W131177235
ARKQ01000033
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
176881
176956
+
Asn
GTT
[ENA]
¡û
>W131177236
ARKQ01000033
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
177094
177169
+
Asn
GTT
[ENA]
¡û
>C006800
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3024992
3025067
+
Asn
GTT
[Ensembl]
¡û
>C006801
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3025108
3025183
+
Asn
GTT
[Ensembl]
¡û
>C006802
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3025224
3025299
+
Asn
GTT
[Ensembl]
¡û
>C006803
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3025340
3025415
+
Asn
GTT
[Ensembl]
¡û
>WENV180650596
OCSY01088636
[OCSY] marine metagenome; 30 L Plastic container
173
248
+
Asn
GTT
[ENA]
¢þ
>WENV182542857
OJAZ01004270
[OJAZ] seawater metagenome; Sea water
3125
3200
+
Asn
GTT
[ENA]
¢þ
>WENV182547189
OJBR01007048
[OJBR] seawater metagenome; Sea water
271
196
-
Asn
GTT
[ENA]
¢þ
>WENV182559146
OJDO01002308
[OJDO] seawater metagenome; Sea water
2304
2379
+
Asn
GTT
[ENA]
¢þ
>WENV182567603
OJEO01015141
[OJEO] seawater metagenome; Sea water
714
639
-
Asn
GTT
[ENA]
¢þ
>WENV182567741
OJEP01000090
[OJEP] seawater metagenome; Sea water
44234
44159
-
Asn
GTT
[ENA]
¢þ
>WENV182568849
OJEX01000097
[OJEX] seawater metagenome; Sea water
25440
25365
-
Asn
GTT
[ENA]
¢þ
>WENV182575261
OJFU01002740
[OJFU] seawater metagenome; Sea water
2923
2998
+
Asn
GTT
[ENA]
¢þ
>WENV182575262
OJFU01002740
[OJFU] seawater metagenome; Sea water
3038
3113
+
Asn
GTT
[ENA]
¢þ
>WENV182575263
OJFU01002740
[OJFU] seawater metagenome; Sea water
3256
3331
+
Asn
GTT
[ENA]
¢þ
>WENV182579739
OJGT01000118
[OJGT] seawater metagenome; Sea water
13015
13090
+
Asn
GTT
[ENA]
¢þ
>WENV182580649
OJGW01005878
[OJGW] seawater metagenome; Sea water
3004
2929
-
Asn
GTT
[ENA]
¢þ
>WENV182585317
OJHH01008277
[OJHH] seawater metagenome; Sea water
233
308
+
Asn
GTT
[ENA]
¢þ
>WENV182585318
OJHH01008277
[OJHH] seawater metagenome; Sea water
533
608
+
Asn
GTT
[ENA]
¢þ
>WENV182586552
OJHK01001164
[OJHK] seawater metagenome; Sea water
12816
12891
+
Asn
GTT
[ENA]
¢þ
>WENV182592737
OJIR01015017
[OJIR] seawater metagenome; Sea water
1126
1201
+
Asn
GTT
[ENA]
¢þ
>WENV183056163
OLHI01000534
[OLHI] seawater metagenome; Sea water
7180
7255
+
Asn
GTT
[ENA]
¢þ
>WENV183057743
OLHM01002498
[OLHM] seawater metagenome; Sea water
2882
2807
-
Asn
GTT
[ENA]
¢þ
>WENV183057823
OLHM01007454
[OLHM] seawater metagenome; Sea water
168
93
-
Asn
GTT
[ENA]
¢þ
>WENV183064846
OLII01001360
[OLII] seawater metagenome; Sea water
8121
8196
+
Asn
GTT
[ENA]
¢þ
>WENV170025181
BCQL01244267
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
3
78
+
Asn
GTT
[ENA]
¢þ
>WENV170704728
LLEM01001010
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2079
2154
+
Asn
GTT
[ENA]
¢þ
>WENV170704917
LLEN01014133
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
80
5
-
Asn
GTT
[ENA]
¢þ
>WENV170780461
MAAB01001325
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
29889
29964
+
Asn
GTT
[ENA]
¢þ
>WENV170780965
MAAB01028900
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
38194
38269
+
Asn
GTT
[ENA]
¢þ
>WENV170780966
MAAB01028900
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
38490
38565
+
Asn
GTT
[ENA]
¢þ
>WENV170781002
MAAB01029009
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
327
252
-
Asn
GTT
[ENA]
¢þ
>WENV170781003
MAAB01029009
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
114
39
-
Asn
GTT
[ENA]
¢þ
>WENV170781121
MAAB01029442
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
3917
3842
-
Asn
GTT
[ENA]
¢þ
>WENV170781122
MAAB01029442
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
3802
3727
-
Asn
GTT
[ENA]
¢þ
>WENV170781129
MAAB01029445
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
426
351
-
Asn
GTT
[ENA]
¢þ
>WENV170781130
MAAB01029445
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
309
234
-
Asn
GTT
[ENA]
¢þ
>WENV170781131
MAAB01029445
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
169
94
-
Asn
GTT
[ENA]
¢þ
>WENV170781205
MAAB01029670
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
27478
27553
+
Asn
GTT
[ENA]
¢þ
>WENV170781206
MAAB01029670
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
27594
27669
+
Asn
GTT
[ENA]
¢þ
>WENV170781230
MAAB01029745
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
117
42
-
Asn
GTT
[ENA]
¢þ
>WENV170781277
MAAB01030660
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
191
116
-
Asn
GTT
[ENA]
¢þ
>WENV170782460
MAAC01010058
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
5461
5536
+
Asn
GTT
[ENA]
¢þ
>WENV170782544
MAAC01010218
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
27477
27552
+
Asn
GTT
[ENA]
¢þ
>WENV170782545
MAAC01010218
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
27593
27668
+
Asn
GTT
[ENA]
¢þ
>WENV170782889
MAAC01011808
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
40787
40862
+
Asn
GTT
[ENA]
¢þ
>WENV170782890
MAAC01011808
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
40927
41002
+
Asn
GTT
[ENA]
¢þ
>WENV170782917
MAAC01012077
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
110701
110626
-
Asn
GTT
[ENA]
¢þ
>WENV170782918
MAAC01012077
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
110507
110432
-
Asn
GTT
[ENA]
¢þ
>WENV170782919
MAAC01012077
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
110390
110315
-
Asn
GTT
[ENA]
¢þ
>WENV170783119
MAAC01013817
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6270
6195
-
Asn
GTT
[ENA]
¢þ
>WENV170783120
MAAC01013817
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6057
5982
-
Asn
GTT
[ENA]
¢þ
>WENV170783121
MAAC01013817
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
5941
5866
-
Asn
GTT
[ENA]
¢þ
>WENV170783968
MAAC01020181
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3906
3831
-
Asn
GTT
[ENA]
¢þ
>WENV170823982
MDSY01067932
[MDSY] marine metagenome; seawater
3354
3429
+
Asn
GTT
[ENA]
¢þ
>WENV170823983
MDSY01067932
[MDSY] marine metagenome; seawater
3564
3639
+
Asn
GTT
[ENA]
¢þ
>W1911770200
QXIO01000002
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
322857
322932
+
Asn
GTT
[ENA]
¡û
>W1911770201
QXIO01000002
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
323080
323155
+
Asn
GTT
[ENA]
¡û
>W1911770202
QXIO01000002
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
323303
323378
+
Asn
GTT
[ENA]
¡û
>W1810155090
PJAI01000030
Gammaproteobacteria
Colwellia echini A3T [PJAI]
69002
68927
-
Asn
GTT
[ENA]
¡û
>W1810155091
PJAI01000030
Gammaproteobacteria
Colwellia echini A3T [PJAI]
68710
68635
-
Asn
GTT
[ENA]
¡û
>W1810155092
PJAI01000030
Gammaproteobacteria
Colwellia echini A3T [PJAI]
68595
68520
-
Asn
GTT
[ENA]
¡û
>W1810155319
PJAQ01000008
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
76187
76262
+
Asn
GTT
[ENA]
¡û
>W1810155320
PJAQ01000008
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
76404
76479
+
Asn
GTT
[ENA]
¡û
>W1810155321
PJAQ01000008
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
76520
76595
+
Asn
GTT
[ENA]
¡û
>W1810155322
PJAQ01000008
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
76636
76711
+
Asn
GTT
[ENA]
¡û
>W1810155560
PJAU01000052
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
69965
70040
+
Asn
GTT
[ENA]
¡û
>W1810155561
PJAU01000052
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
70172
70247
+
Asn
GTT
[ENA]
¡û
>W1810156015
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
1100847
1100772
-
Asn
GTT
[ENA]
¡û
>W1810156016
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
1100731
1100656
-
Asn
GTT
[ENA]
¡û
>W1810156017
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
1100615
1100540
-
Asn
GTT
[ENA]
¡û
>W1810156018
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
1100499
1100424
-
Asn
GTT
[ENA]
¡û
>W1810735916
QOLD01000091
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
61389
61464
+
Asn
GTT
[ENA]
¡û
>W1810735917
QOLD01000091
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
61507
61582
+
Asn
GTT
[ENA]
¡û
>W1511322853
JQEC01000003
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
80
155
+
Asn
GTT
[ENA]
¡û
>W1511322854
JQEC01000003
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
196
271
+
Asn
GTT
[ENA]
¡û
>W1511322881
JQEC01000029
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
158592
158667
+
Asn
GTT
[ENA]
¡û
>W1511322982
JQED01000040
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
25674
25749
+
Asn
GTT
[ENA]
¡û
>W1511322983
JQED01000040
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
25789
25864
+
Asn
GTT
[ENA]
¡û
>W1511322984
JQED01000040
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
26007
26082
+
Asn
GTT
[ENA]
¡û
>W1511322985
JQED01000040
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
26121
26196
+
Asn
GTT
[ENA]
¡û
>C161052287
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
1834677
1834602
-
Asn
GTT
[Ensembl]
¡û
>C161052288
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
1834497
1834422
-
Asn
GTT
[Ensembl]
¡û
>C161052289
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
1834317
1834242
-
Asn
GTT
[Ensembl]
¡û
>W1610663860
LJVG01000026
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
23052
22977
-
Asn
GTT
[ENA]
¡û
>W1610663861
LJVG01000026
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
22872
22797
-
Asn
GTT
[ENA]
¡û
>W1610663862
LJVG01000026
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
22692
22617
-
Asn
GTT
[ENA]
¡û
>W1610667813
LJYX01000009
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
117309
117234
-
Asn
GTT
[ENA]
¡û
>W1610667814
LJYX01000009
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
117131
117056
-
Asn
GTT
[ENA]
¡û
>W1610667815
LJYX01000009
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
116951
116876
-
Asn
GTT
[ENA]
¡û
>W1710087357
BDQM01000023
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
22598
22523
-
Asn
GTT
[ENA]
¡û
>W1710087358
BDQM01000023
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
22418
22343
-
Asn
GTT
[ENA]
¡û
>W1710087359
BDQM01000023
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
22238
22163
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK