This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237571 (75 seq.)
>W1710785191
LJHQ01000046
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
24516
24441
-
Met
CAT
[ENA]
¡û
>W1710858008
LMAR01000009
Alphaproteobacteria
Bosea thiooxidans [LMAR]
35879
35954
+
Met
CAT
[ENA]
¡û
>W1710869492
LMJT01000034
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
13922
13847
-
Met
CAT
[ENA]
¡û
>W1710869537
LMJU01000017
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
47889
47814
-
Met
CAT
[ENA]
¡û
>W1710869631
LMJW01000018
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
307207
307282
+
Met
CAT
[ENA]
¡û
>W1710893380
LNER01000770
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
603
678
+
Met
CAT
[ENA]
¡û
>W1711073120
LSIG01000043
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
120
195
+
Met
CAT
[ENA]
¡û
>W1711073316
LSIK01000316
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
133
208
+
Met
CAT
[ENA]
¡û
>W1711073817
LSIY01000178
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
133
208
+
Met
CAT
[ENA]
¡û
>W1711074357
LSJL01000128
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
133
208
+
Met
CAT
[ENA]
¡û
>W1711074491
LSJP01000021
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
133
208
+
Met
CAT
[ENA]
¡û
>W1711074615
LSJR01000382
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
133
208
+
Met
CAT
[ENA]
¡û
>W1711074740
LSJU01001134
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
133
208
+
Met
CAT
[ENA]
¡û
>W1711074787
LSJV01000219
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
33778
33853
+
Met
CAT
[ENA]
¡û
>W1711074856
LSJX01000162
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
81435
81360
-
Met
CAT
[ENA]
¡û
>W1711075585
LSKN01000279
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
93130
93055
-
Met
CAT
[ENA]
¡û
>W1711385477
MEEG01000116
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
11866
11791
-
Met
CAT
[ENA]
¡û
>W1711502397
MKSQ01000023
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
8285
8360
+
Met
CAT
[ENA]
¡û
>C171049978
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
3824669
3824594
-
Met
CAT
-
¡û
>C171057750
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
5646697
5646622
-
Met
CAT
-
¡û
>WENV181168132
OEIU01175632
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
221
296
+
Ile2
CAT
[ENA]
¢þ
>WENV181228002
OFDN01103087
[OFDN] hot springs metagenome; Water
30
105
+
Ile2
CAT
[ENA]
¢þ
>WENV181312354
OFJB01092329
[OFJB] sludge metagenome; sludge
185
260
+
Ile2
CAT
[ENA]
¢þ
>WENV181415137
OGCL01004526
[OGCL] hot springs metagenome; Hot spring water
6955
6880
-
Ile2
CAT
[ENA]
¢þ
>WENV181416162
OGCL01057766
[OGCL] hot springs metagenome; Hot spring water
1052
977
-
Ile2
CAT
[ENA]
¢þ
>WENV183741259
PJUF01070031
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
105
180
+
Ile2
CAT
[ENA]
¢þ
>WENV170011917
APMI01102546
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2008
2083
+
Met
CAT
[ENA]
¢þ
>WENV170680828
LFEF01025247
[LFEF] freshwater metagenome; waterbloom
5554
5479
-
Met
CAT
[ENA]
¢þ
>WENV170713029
LNFM01022581
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
14553
14478
-
Met
CAT
[ENA]
¢þ
>WENV171003166
NNBT01002068
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
73989
73914
-
Met
CAT
[ENA]
¢þ
>WENV171003761
NNBV01000658
[NNBV] plant metagenome; symbiotic tissue sample KVS11
2510
2435
-
Met
CAT
[ENA]
¢þ
>C181063187
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
1772491
1772566
+
Met
CAT
-
¡û
>C191013999
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
175650
175725
+
Met
CAT
-
¡û
>W141805289
JPKG01000017
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
149409
149334
-
Met
CAT
[ENA]
¡û
>W141815792
JQJJ01000008
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
546978
546903
-
Met
CAT
[ENA]
¡û
>W1910501724
FYAS01000025
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
189602
189527
-
Met
CAT
[ENA]
¡û
>W1910635424
LNCQ01000048
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
61634
61559
-
Met
CAT
[ENA]
¡û
>W1910840115
MZXT01000006
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
754526
754601
+
Met
CAT
[ENA]
¡û
>W1910840176
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
754352
754427
+
Met
CAT
[ENA]
¡û
>W1910847671
NBDP01000042
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
159626
159701
+
Met
CAT
[ENA]
¡û
>W1810251990
PQFZ01000001
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
379230
379305
+
Met
CAT
[ENA]
¡û
>W1810463357
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
3801617
3801692
+
Met
CAT
[ENA]
¡û
>W1810676885
QKMI01000002
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
444418
444493
+
Met
CAT
[ENA]
¡û
>W1810783301
QQTO01000016
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
90256
90331
+
Met
CAT
[ENA]
¡û
>W1810783362
QQTP01000014
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
90256
90331
+
Met
CAT
[ENA]
¡û
>W1511353029
JROW01000326
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
18669
18594
-
Met
CAT
[ENA]
¡û
>C161070698
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
2286584
2286509
-
Met
CAT
[Ensembl]
¡û
>W1610550618
JXTJ01000006
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
281862
281937
+
Met
CAT
[ENA]
¡û
>W1610617180
LGSZ01000052
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
132018
131943
-
Met
CAT
[ENA]
¡û
>W1610648997
LJHQ01000046
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
24516
24441
-
Met
CAT
[ENA]
¡û
>W1610720354
LMAR01000009
Alphaproteobacteria
Bosea thiooxidans [LMAR]
35879
35954
+
Met
CAT
[ENA]
¡û
>W1610731838
LMJT01000034
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
13922
13847
-
Met
CAT
[ENA]
¡û
>W1610731883
LMJU01000017
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
47889
47814
-
Met
CAT
[ENA]
¡û
>W1610731977
LMJW01000018
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
307207
307282
+
Met
CAT
[ENA]
¡û
>W1610753646
LNER01000770
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
603
678
+
Met
CAT
[ENA]
¡û
>W1610912425
LSIG01000043
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
120
195
+
Met
CAT
[ENA]
¡û
>W1610912621
LSIK01000316
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
133
208
+
Met
CAT
[ENA]
¡û
>W1610913122
LSIY01000178
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
133
208
+
Met
CAT
[ENA]
¡û
>W1610913662
LSJL01000128
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
133
208
+
Met
CAT
[ENA]
¡û
>W1610913796
LSJP01000021
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
133
208
+
Met
CAT
[ENA]
¡û
>W1610913920
LSJR01000382
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
133
208
+
Met
CAT
[ENA]
¡û
>W1610914045
LSJU01001134
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
133
208
+
Met
CAT
[ENA]
¡û
>W1610914092
LSJV01000219
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
33778
33853
+
Met
CAT
[ENA]
¡û
>W1610914161
LSJX01000162
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
81435
81360
-
Met
CAT
[ENA]
¡û
>W1610914890
LSKN01000279
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
93130
93055
-
Met
CAT
[ENA]
¡û
>W1710064182
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
3782182
3782257
+
Met
CAT
[ENA]
¡û
>W1710515685
FNBZ01000002
Alphaproteobacteria
Bosea robiniae [FNBZ]
242207
242282
+
Met
CAT
[ENA]
¡û
>W1710538940
FNUY01000003
Alphaproteobacteria
Bosea lathyri [FNUY]
37473
37548
+
Met
CAT
[ENA]
¡û
>W1710544045
FOAN01000016
Alphaproteobacteria
Bosea lupini [FOAN]
156
81
-
Met
CAT
[ENA]
¡û
>W1710556982
FOKP01000004
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
108799
108724
-
Met
CAT
[ENA]
¡û
>W1710564908
FOQV01000002
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
249862
249787
-
Met
CAT
[ENA]
¡û
>W1710596431
FTMO01000002
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
320178
320103
-
Met
CAT
[ENA]
¡û
>W1710603260
FUYX01000001
Alphaproteobacteria
Bosea thiooxidans [FUYX]
359331
359256
-
Met
CAT
[ENA]
¡û
>W1710660453
JXTJ01000006
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
281862
281937
+
Met
CAT
[ENA]
¡û
>W1710742794
LGSZ01000052
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
132018
131943
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK