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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238786 (121 seq.)
>W1711094766
LTGG01000028
Betaproteobacteria
Eikenella sp. HMSC071B05 [LTGG]
56169
56094
-
Lys
CTT
[ENA]
¡û
>W1711107399
LTST01000044
Betaproteobacteria
Eikenella sp. HMSC073A11 [LTST]
11038
11113
+
Lys
CTT
[ENA]
¡û
>W1711222647
LXSF01000007
Betaproteobacteria
Eikenella corrodens [LXSF]
19326
19401
+
Lys
CTT
[ENA]
¡û
>W1711222729
LXSH01000018
Betaproteobacteria
Eikenella corrodens [LXSH]
52821
52746
-
Lys
CTT
[ENA]
¡û
>W1711222783
LXSI01000008
Betaproteobacteria
Eikenella corrodens [LXSI]
58796
58871
+
Lys
CTT
[ENA]
¡û
>W1711222840
LXSJ01000048
Betaproteobacteria
Eikenella corrodens [LXSJ]
21927
22002
+
Lys
CTT
[ENA]
¡û
>W1711222860
LXSK01000003
Betaproteobacteria
Eikenella sp. NML01-A-086 [LXSK]
133522
133447
-
Lys
CTT
[ENA]
¡û
>W1711222889
LXSL01000011
Betaproteobacteria
Eikenella longinqua NML02-A-017 [LXSL]
161703
161778
+
Lys
CTT
[ENA]
¡û
>W1711223047
LXSO01000008
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
123218
123143
-
Lys
CTT
[ENA]
¡û
>W1711223086
LXSP01000003
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
157954
158029
+
Lys
CTT
[ENA]
¡û
>W1711223146
LXSQ01000031
Betaproteobacteria
Eikenella halliae NML130454 [LXSQ]
18248
18323
+
Lys
CTT
[ENA]
¡û
>W1711223203
LXSS01000010
Betaproteobacteria
Eikenella sp. NML97-A-109 [LXSS]
222871
222796
-
Lys
CTT
[ENA]
¡û
>W1711223250
LXST01000002
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
220278
220203
-
Lys
CTT
[ENA]
¡û
>W1711385770
MEEO01000189
Betaproteobacteria
Nitrosomonadales bacterium SCN 54-20 [MEEO]
12684
12609
-
Lys
CTT
[ENA]
¡û
>W1711505592
MKVR01000020
Betaproteobacteria
Nitrosospira sp. 56-18 [MKVR]
17967
17892
-
Lys
CTT
[ENA]
¡û
>W131221607
AUAP01000019
Betaproteobacteria
Conchiformibius kuhniae DSM 17694 [AUAP]
6725
6650
-
Lys
TTT
[ENA]
¡û
>W131249822
CAUA01000016
Betaproteobacteria
Nitrosospira lacus APG3 [CAUA]
25196
25271
+
Lys
CTT
[ENA]
¡û
>C015138
CP000103
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 [CP000103]
155336
155411
+
Lys
CTT
[Ensembl]
¡û
>WENV180727968
ODGU01018401
[ODGU] human metagenome; G_DNA_Supragingival plaque
114
39
-
Lys
TTT
[ENA]
¢þ
>WENV180728953
ODGU01130373
[ODGU] human metagenome; G_DNA_Supragingival plaque
382
457
+
Lys
CTT
[ENA]
¢þ
>WENV180734827
ODGZ01027159
[ODGZ] human metagenome; G_DNA_Supragingival plaque
592
517
-
Lys
CTT
[ENA]
¢þ
>WENV180735767
ODHB01000592
[ODHB] human metagenome; G_DNA_Supragingival plaque
9383
9458
+
Lys
TTT
[ENA]
¢þ
>WENV180739292
ODHD01026199
[ODHD] human metagenome; G_DNA_Supragingival plaque
204
129
-
Lys
CTT
[ENA]
¢þ
>WENV180755390
ODHU01141480
[ODHU] human metagenome; G_DNA_Supragingival plaque
3
75
+
Lys
TTT
[ENA]
¢þ
>WENV180797695
ODJB01103021
[ODJB] human metagenome; G_DNA_Supragingival plaque
417
492
+
Lys
CTT
[ENA]
¢þ
>WENV180805191
ODJG01088577
[ODJG] human metagenome; G_DNA_Supragingival plaque
194
119
-
Lys
CTT
[ENA]
¢þ
>WENV180814486
ODJO01018929
[ODJO] human metagenome; G_DNA_Supragingival plaque
643
718
+
Lys
CTT
[ENA]
¢þ
>WENV180823188
ODJW01007986
[ODJW] human metagenome; G_DNA_Supragingival plaque
1334
1259
-
Lys
TTT
[ENA]
¢þ
>WENV180835700
ODKE01008787
[ODKE] human metagenome; G_DNA_Supragingival plaque
1148
1073
-
Lys
CTT
[ENA]
¢þ
>WENV180844130
ODKN01038695
[ODKN] human metagenome; G_DNA_Supragingival plaque
690
615
-
Lys
CTT
[ENA]
¢þ
>WENV180846840
ODKT01025276
[ODKT] human metagenome; G_DNA_Supragingival plaque
1090
1165
+
Lys
CTT
[ENA]
¢þ
>WENV180860118
ODLD01020346
[ODLD] human metagenome; G_DNA_Supragingival plaque
218
293
+
Lys
CTT
[ENA]
¢þ
>WENV180861533
ODLE01005417
[ODLE] human metagenome; G_DNA_Tongue dorsum
749
824
+
Lys
CTT
[ENA]
¢þ
>WENV180880522
ODLZ01027076
[ODLZ] human metagenome; G_DNA_Tongue dorsum
148
73
-
Lys
TTT
[ENA]
¢þ
>WENV180923161
ODTJ01055983
[ODTJ] human metagenome; G_DNA_Supragingival plaque
83
158
+
Lys
CTT
[ENA]
¢þ
>WENV180924214
ODTK01001912
[ODTK] human metagenome; G_DNA_Supragingival plaque
5527
5602
+
Lys
CTT
[ENA]
¢þ
>WENV180928197
ODTM01020092
[ODTM] human metagenome; G_DNA_Supragingival plaque
179
104
-
Lys
CTT
[ENA]
¢þ
>WENV180933635
ODTR01000947
[ODTR] human metagenome; G_DNA_Supragingival plaque
78
3
-
Lys
TTT
[ENA]
¢þ
>WENV180938911
ODTX01009762
[ODTX] human metagenome; G_DNA_Supragingival plaque
2759
2834
+
Lys
CTT
[ENA]
¢þ
>WENV180945342
ODUC01119953
[ODUC] human metagenome; G_DNA_Supragingival plaque
135
60
-
Lys
CTT
[ENA]
¢þ
>WENV180973850
ODUW01022422
[ODUW] human metagenome; G_DNA_Supragingival plaque
450
375
-
Lys
CTT
[ENA]
¢þ
>WENV180984251
ODVF01214921
[ODVF] human metagenome; G_DNA_Supragingival plaque
151
76
-
Lys
CTT
[ENA]
¢þ
>WENV180984303
ODVF01250359
[ODVF] human metagenome; G_DNA_Supragingival plaque
7
79
+
Lys
TTT
[ENA]
¢þ
>WENV180987560
ODVK01042412
[ODVK] human metagenome; G_DNA_Supragingival plaque
561
486
-
Lys
CTT
[ENA]
¢þ
>WENV180992542
ODVP01031148
[ODVP] human metagenome; G_DNA_Buccal mucosa
262
337
+
Lys
TTT
[ENA]
¢þ
>WENV181003654
ODVX01021986
[ODVX] human metagenome; G_DNA_Supragingival plaque
101
26
-
Lys
CTT
[ENA]
¢þ
>WENV181008264
ODWE01003427
[ODWE] human metagenome; G_DNA_Supragingival plaque
4267
4192
-
Lys
TTT
[ENA]
¢þ
>WENV181050627
ODYD01033665
[ODYD] human metagenome; G_DNA_Supragingival plaque
428
353
-
Lys
CTT
[ENA]
¢þ
>WENV181064421
ODYP01028966
[ODYP] human metagenome; G_DNA_Supragingival plaque
1121
1196
+
Lys
CTT
[ENA]
¢þ
>WENV181068031
ODZI01102690
[ODZI] human metagenome; G_DNA_Supragingival plaque
340
265
-
Lys
CTT
[ENA]
¢þ
>WENV181070116
OEAE01000243
[OEAE] human metagenome; G_DNA_Supragingival plaque
17157
17232
+
Lys
CTT
[ENA]
¢þ
>WENV181076404
OEAP01004745
[OEAP] human metagenome; G_DNA_Supragingival plaque
1940
1865
-
Lys
CTT
[ENA]
¢þ
>WENV181076613
OEAP01008721
[OEAP] human metagenome; G_DNA_Supragingival plaque
78
3
-
Lys
TTT
[ENA]
¢þ
>WENV181076757
OEAP01012917
[OEAP] human metagenome; G_DNA_Supragingival plaque
79
4
-
Lys
TTT
[ENA]
¢þ
>WENV181079738
OEAS01013100
[OEAS] human metagenome; G_DNA_Supragingival plaque
2709
2634
-
Lys
CTT
[ENA]
¢þ
>WENV181080259
OEAS01035453
[OEAS] human metagenome; G_DNA_Supragingival plaque
265
340
+
Lys
CTT
[ENA]
¢þ
>WENV181082892
OEAV01001119
[OEAV] human metagenome; G_DNA_Supragingival plaque
8017
8092
+
Lys
TTT
[ENA]
¢þ
>WENV181083303
OEAV01004697
[OEAV] human metagenome; G_DNA_Supragingival plaque
846
771
-
Lys
CTT
[ENA]
¢þ
>WENV181092159
OEBC01288763
[OEBC] human metagenome; G_DNA_Supragingival plaque
160
85
-
Lys
CTT
[ENA]
¢þ
>WENV181121858
OEFL01024096
[OEFL] human metagenome; G_DNA_Supragingival plaque
1064
1139
+
Lys
CTT
[ENA]
¢þ
>WENV181137796
OEGJ01027370
[OEGJ] human metagenome; G_DNA_Supragingival plaque
209
134
-
Lys
CTT
[ENA]
¢þ
>WENV181138045
OEGJ01085386
[OEGJ] human metagenome; G_DNA_Supragingival plaque
72
-1
-
Lys
TTT
[ENA]
¢þ
>WENV181144112
OEHM01098726
[OEHM] human metagenome; G_DNA_Supragingival plaque
156
231
+
Lys
CTT
[ENA]
¢þ
>WENV181146722
OEHQ01019655
[OEHQ] human metagenome; G_DNA_Supragingival plaque
1114
1189
+
Lys
CTT
[ENA]
¢þ
>WENV181151227
OEHW01029231
[OEHW] human metagenome; G_DNA_Tongue dorsum
73
148
+
Lys
CTT
[ENA]
¢þ
>WENV181153219
OEIA01032419
[OEIA] human metagenome; G_DNA_Supragingival plaque
687
762
+
Lys
CTT
[ENA]
¢þ
>WENV181156416
OEIE01015045
[OEIE] human metagenome; G_DNA_Supragingival plaque
725
800
+
Lys
CTT
[ENA]
¢þ
>WENV181159923
OEIK01000602
[OEIK] human metagenome; G_DNA_Supragingival plaque
19004
18929
-
Lys
TTT
[ENA]
¢þ
>WENV181179166
OEJT01001708
[OEJT] human metagenome; G_DNA_Supragingival plaque
10434
10509
+
Lys
TTT
[ENA]
¢þ
>WENV181181139
OEJU01006845
[OEJU] human metagenome; G_DNA_Supragingival plaque
2624
2699
+
Lys
TTT
[ENA]
¢þ
>WENV181181497
OEJU01090149
[OEJU] human metagenome; G_DNA_Supragingival plaque
183
108
-
Lys
CTT
[ENA]
¢þ
>W141202108
AZGQ01000004
Betaproteobacteria
Eikenella corrodens CC92I [AZGQ]
235207
235282
+
Lys
CTT
[ENA]
¡û
>WENV183509247
OMHH01001993
[OMHH] human oral metagenome; human oral
1577
1502
-
Lys
CTT
[ENA]
¢þ
>C181049330
CP021106
Betaproteobacteria
Nitrosospira lacus APG3 [CP021106]
454111
454036
-
Lys
CTT
-
¡û
>C181198273
CP031253
Betaproteobacteria
Neisseria lactamica M17106 [CP031253]
140719
140794
+
Lys
TTT
-
¡û
>C191128730
CP034670
Betaproteobacteria
Eikenella corrodens KCOM 3110 [CP034670]
1991303
1991378
+
Lys
CTT
-
¡û
>W141558433
JHVX01000008
Betaproteobacteria
Nitrosospira briensis C-128 [JHVX]
25521
25446
-
Lys
CTT
[ENA]
¡û
>W1910228575
FNVK01000030
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 Nl13 [FNVK]
20035
19960
-
Lys
CTT
[ENA]
¡û
>W1810463614
PZZR01000013
Betaproteobacteria
Nitrosospira sp. Nsp22 [PZZR]
44766
44841
+
Lys
CTT
[ENA]
¡û
>W1810464088
QAAC01000008
Betaproteobacteria
Nitrosospira sp. Nsp6 [QAAC]
15624
15549
-
Lys
CTT
[ENA]
¡û
>W1810476936
QAOK01000006
Betaproteobacteria
Nitrosospira multiformis Nl12 [QAOK]
34415
34340
-
Lys
CTT
[ENA]
¡û
>W1810477275
QAOR01000008
Betaproteobacteria
Nitrosospira sp. Nsp5 [QAOR]
15624
15549
-
Lys
CTT
[ENA]
¡û
>W1810477441
QAOU01000010
Betaproteobacteria
Nitrosospira sp. Nsp2 [QAOU]
61609
61534
-
Lys
CTT
[ENA]
¡û
>W1810696201
QLTB01000021
Betaproteobacteria
Nitrosospira multiformis Nl15 [QLTB]
11458
11533
+
Lys
CTT
[ENA]
¡û
>W1810696227
QLTC01000013
Betaproteobacteria
Nitrosospira multiformis Nsp16 [QLTC]
21642
21567
-
Lys
CTT
[ENA]
¡û
>W1810696284
QLTD01000008
Betaproteobacteria
Nitrosospira multiformis Nl8 [QLTD]
107243
107318
+
Lys
CTT
[ENA]
¡û
>W1810764712
QQCF01000015
Betaproteobacteria
Neisseria lactamica M17105 [QQCF]
35054
35129
+
Lys
TTT
[ENA]
¡û
>W1810765151
QQCO01000004
Betaproteobacteria
Neisseria lactamica M37084 [QQCO]
112834
112759
-
Lys
TTT
[ENA]
¡û
>W1810767948
QQEQ01000013
Betaproteobacteria
Neisseria lactamica M37179 [QQEQ]
37430
37355
-
Lys
TTT
[ENA]
¡û
>W1810768415
QQEZ01000011
Betaproteobacteria
Neisseria polysaccharea M38962 [QQEZ]
33027
33102
+
Lys
TTT
[ENA]
¡û
>W1810776552
QQLC01000003
Betaproteobacteria
Neisseria lactamica M37107 [QQLC]
171433
171508
+
Lys
TTT
[ENA]
¡û
>W1810777131
QQLN01000006
Betaproteobacteria
Neisseria lactamica M37131 [QQLN]
35362
35437
+
Lys
TTT
[ENA]
¡û
>W1810778735
QQMS01000013
Betaproteobacteria
Neisseria lactamica M37058 [QQMS]
35672
35747
+
Lys
TTT
[ENA]
¡û
>C151094469
CP012371
Betaproteobacteria
Nitrosospira briensis C-128 [CP012371]
1638719
1638644
-
Lys
CTT
-
¡û
>W10112094
ADEA01000038
Betaproteobacteria
Neisseria sp. oral taxon 014 oral taxon 014 str. F0314 [ADEA]
94
19
-
Lys
TTT
[ENA]
¡û
>W11115071
ADEA01000038
Betaproteobacteria
Neisseria sp. oral taxon 014 oral taxon 014 str. F0314 [ADEA]
94
19
-
Lys
TTT
[ENA]
¡û
>W1511508760
JXQM01000007
Betaproteobacteria
Nitrosospira sp. NpAV [JXQM]
120004
120079
+
Lys
CTT
[ENA]
¡û
>W1611007060
LXSF01000007
Betaproteobacteria
Eikenella corrodens [LXSF]
19326
19401
+
Lys
CTT
[ENA]
¡û
>W1611007142
LXSH01000018
Betaproteobacteria
Eikenella corrodens [LXSH]
52821
52746
-
Lys
CTT
[ENA]
¡û
>W1611007196
LXSI01000008
Betaproteobacteria
Eikenella corrodens [LXSI]
58796
58871
+
Lys
CTT
[ENA]
¡û
>W1611007253
LXSJ01000048
Betaproteobacteria
Eikenella corrodens [LXSJ]
21927
22002
+
Lys
CTT
[ENA]
¡û
>W1611007273
LXSK01000003
Betaproteobacteria
Eikenella sp. NML01-A-086 [LXSK]
133522
133447
-
Lys
CTT
[ENA]
¡û
>W1611007302
LXSL01000011
Betaproteobacteria
Eikenella longinqua NML02-A-017 [LXSL]
161703
161778
+
Lys
CTT
[ENA]
¡û
>W1611007460
LXSO01000008
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
123218
123143
-
Lys
CTT
[ENA]
¡û
>W1611007499
LXSP01000003
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
157954
158029
+
Lys
CTT
[ENA]
¡û
>W1611007559
LXSQ01000031
Betaproteobacteria
Eikenella halliae NML130454 [LXSQ]
18248
18323
+
Lys
CTT
[ENA]
¡û
>W1611007616
LXSS01000010
Betaproteobacteria
Eikenella sp. NML97-A-109 [LXSS]
222871
222796
-
Lys
CTT
[ENA]
¡û
>W1611007663
LXST01000002
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
220278
220203
-
Lys
CTT
[ENA]
¡û
>W1710505975
FMUF01000011
Betaproteobacteria
Nitrosospira sp. Nsp1 [FMUF]
88260
88335
+
Lys
CTT
[ENA]
¡û
>W1710507286
FMVD01000007
Betaproteobacteria
Nitrosospira sp. Nsp13 [FMVD]
131205
131280
+
Lys
CTT
[ENA]
¡û
>W1710507947
FMVQ01000009
Betaproteobacteria
Nitrosospira sp. Nl5 [FMVQ]
25331
25256
-
Lys
CTT
[ENA]
¡û
>W1710509141
FMWY01000005
Betaproteobacteria
Nitrosospira sp. Nsp18 [FMWY]
122739
122814
+
Lys
CTT
[ENA]
¡û
>W1710527363
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
422533
422458
-
Lys
CTT
[ENA]
¡û
>W1710532610
FNQL01000014
Betaproteobacteria
Nitrosospira multiformis [FNQL]
35392
35317
-
Lys
CTT
[ENA]
¡û
>W1710545215
FOBH01000018
Betaproteobacteria
Nitrosovibrio tenuis [FOBH]
11212
11287
+
Lys
CTT
[ENA]
¡û
>W1710547249
FOCT01000019
Betaproteobacteria
Nitrosospira multiformis [FOCT]
42333
42408
+
Lys
CTT
[ENA]
¡û
>W1710553134
FOHI01000012
Betaproteobacteria
Nitrosospira multiformis [FOHI]
42756
42681
-
Lys
CTT
[ENA]
¡û
>W1710563658
FOPV01000035
Betaproteobacteria
Nitrosospira sp. Nsp14 [FOPV]
7386
7461
+
Lys
CTT
[ENA]
¡û
>W1710578978
FPBZ01000013
Betaproteobacteria
Nitrosospira multiformis [FPBZ]
1770
1695
-
Lys
CTT
[ENA]
¡û
>W1710579579
FPIQ01000015
Betaproteobacteria
Nitrosovibrio sp. Nv17 [FPIQ]
8719
8644
-
Lys
CTT
[ENA]
¡û
>W1710591622
FRBV01000020
Betaproteobacteria
Nitrosospira sp. Nsp11 [FRBV]
23694
23619
-
Lys
CTT
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
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End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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