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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241117 (26 seq.)
>A171000834
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
2567602
2567528
-
Met
CAT
-
¡û
>A171003465
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
274319
274394
+
Met
CAT
-
¡û
>A178000125
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
2913937
2913832
-
Met
CAT
-
¡û
>A178000330
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1815408
1815515
+
Met
CAT
-
¡û
>A178000336
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
655057
655163
+
Met
CAT
-
¡û
>A178000413
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
198955
199061
+
Met
CAT
-
¡û
>A178000701
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
3184748
3184642
-
Met
CAT
-
¡û
>A178000703
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
1199995
1199890
-
Met
CAT
-
¡û
>A179000683
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
654907
654800
-
Met
CAT
-
¡û
>A17A001589
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
654907
654800
-
Met
CAT
-
¡û
>WENV170008718
APHM01002669
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
568
491
-
Met
CAT
[ENA]
¢þ
>WENV170659992
JXWS01073662
[JXWS] soil metagenome; rice field; elevated CO2
319
243
-
Met
CAT
[ENA]
¢þ
>WENV170680100
LFCJ01004073
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5635
5709
+
Met
CAT
[ENA]
¢þ
>WENV170682306
LFFM01008774
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
3662
3588
-
Met
CAT
[ENA]
¢þ
>W1910228408
FNPB01000001
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
487387
487461
+
Met
CAT
[ENA]
¡û
>W1910230683
FOYS01000001
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
608100
608174
+
Met
CAT
[ENA]
¡û
>W1910230730
FOYT01000001
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
675563
675637
+
Met
CAT
[ENA]
¡û
>W1911682227
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
2001080
2001006
-
Met
CAT
[ENA]
¡û
>W1911693737
QLVG01000024
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
1853
1927
+
Met
CAT
[ENA]
¡û
>W1911769973
QXIJ01000003
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
216952
217026
+
Met
CAT
[ENA]
¡û
>W1610000775
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
953657
953583
-
Met
CAT
[ENA]
¡û
>W1610011777
AOHT01000048
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
102487
102561
+
Met
CAT
[ENA]
¡û
>W1610012118
AOIB01000014
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
172763
172689
-
Met
CAT
[ENA]
¡û
>W1610012225
AOID01000049
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
14453
14527
+
Met
CAT
[ENA]
¡û
>W1610012869
AOIV01000027
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
98180
98254
+
Met
CAT
[ENA]
¡û
>W1610019159
ARPZ01000001
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
19743
19820
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK