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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242249 (100 seq.)
>W131238120
AUUC01000003
Bacillota
Blautia producta ATCC 27340 = DSM 2950 [AUUC]
288620
288694
+
Val
TAC
[ENA]
¡û
>W131238142
AUUC01000021
Bacillota
Blautia producta ATCC 27340 = DSM 2950 [AUUC]
565
639
+
Val
TAC
[ENA]
¡û
>W1711903051
MZGX01000004
Bacillota
Ruminiclostridium hungatei [MZGX]
200451
200376
-
Val
TAC
[ENA]
¡û
>W1711903053
MZGX01000004
Bacillota
Ruminiclostridium hungatei [MZGX]
118246
118171
-
Val
TAC
[ENA]
¡û
>W1711903069
MZGX01000016
Bacillota
Ruminiclostridium hungatei [MZGX]
13664
13589
-
Val
TAC
[ENA]
¡û
>W131098541
AORV01000046
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
142061
141986
-
Val
TAC
[ENA]
¡û
>W131098543
AORV01000046
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
37290
37215
-
Val
TAC
[ENA]
¡û
>W131098548
AORV01000056
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
20402
20327
-
Val
TAC
[ENA]
¡û
>W131204216
ATAY01000028
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
12655
12580
-
Val
TAC
[ENA]
¡û
>W131204231
ATAY01000085
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
115841
115766
-
Val
TAC
[ENA]
¡û
>W131204240
ATAY01000094
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
137139
137064
-
Val
TAC
[ENA]
¡û
>w020754
AAVC01000057
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
14924
14852
-
Val
TAC
[ENA]
¡û
>w020727
AAVC01000016
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
29013
29088
+
Val
TAC
[ENA]
¡û
>WENV180098850
MTBK01270650
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1940
1868
-
Val
TAC
[ENA]
¢þ
>WENV180176207
OAWC01069128
[OAWC] human gut metagenome; faeces
3
77
+
Val
TAC
[ENA]
¢þ
>WENV180286572
OBII01003683
[OBII] human gut metagenome; feces
2092
2018
-
Val
TAC
[ENA]
¢þ
>WENV180542429
OCHS01161427
[OCHS] human gut metagenome; human gut
75
150
+
Val
TAC
[ENA]
¢þ
>WENV180542550
OCHS01246427
[OCHS] human gut metagenome; human gut
132
57
-
Val
TAC
[ENA]
¢þ
>WENV180542592
OCHS01259162
[OCHS] human gut metagenome; human gut
77
2
-
Val
TAC
[ENA]
¢þ
>WENV180659409
OCVV010858398
[OCVV] gut metagenome; gut
332
407
+
Val
TAC
[ENA]
¢þ
>WENV180659411
OCVV010858398
[OCVV] gut metagenome; gut
332
407
+
Val
TAC
[ENA]
¢þ
>WENV180668861
OCVV011268461
[OCVV] gut metagenome; gut
22
97
+
Val
TAC
[ENA]
¢þ
>WENV180668865
OCVV011268461
[OCVV] gut metagenome; gut
22
97
+
Val
TAC
[ENA]
¢þ
>WENV180670207
OCVV011296590
[OCVV] gut metagenome; gut
254
329
+
Val
TAC
[ENA]
¢þ
>WENV180670211
OCVV011296590
[OCVV] gut metagenome; gut
254
329
+
Val
TAC
[ENA]
¢þ
>WENV180671449
OCVV011317691
[OCVV] gut metagenome; gut
748
673
-
Val
TAC
[ENA]
¢þ
>WENV180671453
OCVV011317691
[OCVV] gut metagenome; gut
748
673
-
Val
TAC
[ENA]
¢þ
>WENV180850267
ODKV01004133
[ODKV] human metagenome; G_DNA_Stool
9761
9686
-
Val
TAC
[ENA]
¢þ
>WENV180992698
ODVQ01000016
[ODVQ] human metagenome; G_DNA_Stool
210292
210217
-
Val
TAC
[ENA]
¢þ
>WENV181055028
ODYI01041416
[ODYI] human metagenome; G_DNA_Stool
198
123
-
Val
TAC
[ENA]
¢þ
>WENV181738407
OGQI01004678
[OGQI] human gut metagenome; faeces
4823
4898
+
Val
TAC
[ENA]
¢þ
>WENV181741616
OGQK01000878
[OGQK] human gut metagenome; faeces
5579
5654
+
Val
TAC
[ENA]
¢þ
>WENV181772084
OGRD01000158
[OGRD] human gut metagenome; faeces
43714
43789
+
Val
TAC
[ENA]
¢þ
>WENV181787907
OGRO01000128
[OGRO] human gut metagenome; faeces
17055
16980
-
Val
TAC
[ENA]
¢þ
>WENV181788809
OGRO01003986
[OGRO] human gut metagenome; faeces
4082
4157
+
Val
TAC
[ENA]
¢þ
>WENV181831149
OGUO01043411
[OGUO] human gut metagenome; faeces
101
26
-
Val
TAC
[ENA]
¢þ
>WENV181914424
OGYF01000242
[OGYF] human gut metagenome; faeces
4975
4900
-
Val
TAC
[ENA]
¢þ
>WENV182062671
OHEV01002364
[OHEV] human gut metagenome; feces
4483
4558
+
Val
TAC
[ENA]
¢þ
>WENV182135789
OHKJ01004453
[OHKJ] human gut metagenome; feces
653
728
+
Val
TAC
[ENA]
¢þ
>W141215654
AZUI01000001
Bacillota
Lacrimispora indolis DSM 755 [AZUI]
2835653
2835727
+
Val
TAC
[ENA]
¡û
>W141215691
AZUI01000001
Bacillota
Lacrimispora indolis DSM 755 [AZUI]
1848136
1848062
-
Val
TAC
[ENA]
¡û
>W141246612
CANF01000039
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
16422
16348
-
Val
TAC
[ENA]
¡û
>W141246646
CANF01002246
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
182
107
-
Val
TAC
[ENA]
¡û
>W141246687
CANF01002344
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
318
243
-
Val
TAC
[ENA]
¡û
>W141246726
CANG01000936
Bacillota
Sedimentibacter sp. B4 [CANG]
256
181
-
Val
TAC
[ENA]
¡û
>W141246737
CANG01000952
Bacillota
Sedimentibacter sp. B4 [CANG]
789
714
-
Val
TAC
[ENA]
¡û
>W141246746
CANG01000957
Bacillota
Sedimentibacter sp. B4 [CANG]
16380
16306
-
Val
TAC
[ENA]
¡û
>WENV182526516
OIWT01025699
[OIWT] human gut metagenome; faeces
1581
1506
-
Val
TAC
[ENA]
¢þ
>WENV182616521
OJKC01033108
[OJKC] metagenome; faeces
82
7
-
Val
TAC
[ENA]
¢þ
>WENV182622378
OJKJ01030346
[OJKJ] metagenome; faeces
395
320
-
Val
TAC
[ENA]
¢þ
>W141279261
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
1636359
1636284
-
Val
TAC
[ENA]
¡û
>W141279269
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
1371156
1371081
-
Val
TAC
[ENA]
¡û
>W141279271
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
1307375
1307300
-
Val
TAC
[ENA]
¡û
>WENV183232408
OLQU01009886
[OLQU] human gut metagenome; faeces
1902
1977
+
Val
TAC
[ENA]
¢þ
>WENV183247459
OLRF01003935
[OLRF] human gut metagenome; faeces
760
685
-
Val
TAC
[ENA]
¢þ
>WENV183773443
PPYF01026807
[PPYF] human gut metagenome; stool from patient with Crohn's disease
424
499
+
Val
TAC
[ENA]
¢þ
>WENV183774473
PPYF01037368
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2679
2753
+
Val
TAC
[ENA]
¢þ
>WENV170071193
CDZQ01048863
[CDZQ] gut metagenome; human stools
22987
22912
-
Val
TAC
[ENA]
¢þ
>WENV170669939
LAHS01009733
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
164
89
-
Val
TAC
[ENA]
¢þ
>WENV170723441
LSQX01268200
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5560
5486
-
Val
TAC
[ENA]
¢þ
>W141452233
JFBV01000001
Bacillota
Clostridium sp. ASBs410 [JFBV]
1073023
1073097
+
Val
TAC
[ENA]
¡û
>W141452295
JFBV01000001
Bacillota
Clostridium sp. ASBs410 [JFBV]
239341
239267
-
Val
TAC
[ENA]
¡û
>WENV170970315
MTKW01062581
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
769
697
-
Val
TAC
[ENA]
¢þ
>W141561077
JHYD01000022
Bacillota
Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 [JHYD]
27465
27390
-
Val
TAC
[ENA]
¡û
>W141561080
JHYD01000024
Bacillota
Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 [JHYD]
146
221
+
Val
TAC
[ENA]
¡û
>W141561082
JHYD01000024
Bacillota
Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 [JHYD]
103868
103943
+
Val
TAC
[ENA]
¡û
>W141806757
JPNB01000001
Bacillota
Kineothrix alysoides KNHs209 [JPNB]
1995572
1995498
-
Val
TAC
[ENA]
¡û
>W141806773
JPNB01000002
Bacillota
Kineothrix alysoides KNHs209 [JPNB]
936067
935995
-
Val
TAC
[ENA]
¡û
>W141806796
JPNB01000003
Bacillota
Kineothrix alysoides KNHs209 [JPNB]
421740
421666
-
Val
TAC
[ENA]
¡û
>C09103077
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3919190
3919115
-
Val
TAC
[Ensembl]
¡û
>C09103085
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3540611
3540536
-
Val
TAC
[Ensembl]
¡û
>C09103087
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3456233
3456158
-
Val
TAC
[Ensembl]
¡û
>W1810677412
QKMR01000007
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
108218
108143
-
Val
TAC
[ENA]
¡û
>W1810677414
QKMR01000007
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
56581
56506
-
Val
TAC
[ENA]
¡û
>W1810677424
QKMR01000013
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
84359
84434
+
Val
TAC
[ENA]
¡û
>W10105876
ACXX01000008
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
95641
95566
-
Val
TAC
[ENA]
¡û
>W10105878
ACXX01000008
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
29951
29876
-
Val
TAC
[ENA]
¡û
>W10105884
ACXX01000010
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
62901
62826
-
Val
TAC
[ENA]
¡û
>W11108198
ACXX02000004
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
75831
75906
+
Val
TAC
[ENA]
¡û
>W11108220
ACXX02000014
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
42281
42356
+
Val
TAC
[ENA]
¡û
>W11108222
ACXX02000014
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
107967
108042
+
Val
TAC
[ENA]
¡û
>C121009845
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4436999
4436924
-
Val
TAC
[Ensembl]
¡û
>C121009852
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4213590
4213515
-
Val
TAC
[Ensembl]
¡û
>C121009854
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4138407
4138332
-
Val
TAC
[Ensembl]
¡û
>C161103877
FP929052
Bacillota
Ruminococcus champanellensis 18P13 = JCM 17042 type strain: 18P13 [FP929052]
246132
246057
-
Val
TAC
[Ensembl]
¡û
>W1610043734
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49250
49325
+
Val
TAC
[ENA]
¡û
>W1610043743
BBAA01000007
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
58987
59062
+
Val
TAC
[ENA]
¡û
>W1610043776
BBAA01000054
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
15849
15924
+
Val
TAC
[ENA]
¡û
>W1610048998
BBEP01000005
Bacillota
Ruminococcus champanellensis 18P13 = JCM 17042 [BBEP]
88496
88571
+
Val
TAC
[ENA]
¡û
>W1610049018
BBEP01000027
Bacillota
Ruminococcus champanellensis 18P13 = JCM 17042 [BBEP]
3628
3553
-
Val
TAC
[ENA]
¡û
>W1710040894
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49250
49325
+
Val
TAC
[ENA]
¡û
>W1710040903
BBAA01000007
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
58987
59062
+
Val
TAC
[ENA]
¡û
>W1710040936
BBAA01000054
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
15849
15924
+
Val
TAC
[ENA]
¡û
>W1710045470
BBEP01000005
Bacillota
Ruminococcus champanellensis 18P13 = JCM 17042 [BBEP]
88496
88571
+
Val
TAC
[ENA]
¡û
>W1710045490
BBEP01000027
Bacillota
Ruminococcus champanellensis 18P13 = JCM 17042 [BBEP]
3628
3553
-
Val
TAC
[ENA]
¡û
>W1710082579
BDHH01000007
Bacillota
Fusibacter sp. 3D3 [BDHH]
1321
1396
+
Val
TAC
[ENA]
¡û
>W1710082586
BDHH01000007
Bacillota
Fusibacter sp. 3D3 [BDHH]
1978
2053
+
Val
TAC
[ENA]
¡û
>W1710082605
BDHH01000020
Bacillota
Fusibacter sp. 3D3 [BDHH]
2281
2356
+
Val
TAC
[ENA]
¡û
>W1710510069
FMXS01000003
Bacillota
Ruminococcaceae bacterium FB2012 [FMXS]
253404
253329
-
Val
TAC
[ENA]
¡û
>W1710510096
FMXS01000009
Bacillota
Ruminococcaceae bacterium FB2012 [FMXS]
130621
130696
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK