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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243234 (45 seq.)
>W1711078568
LSMZ01000076
Bacillota
Clostridium sp. link-BC1 [LSMZ]
32777
32702
-
Pro
TGG
[ENA]
¡û
>W1711222545
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
2983592
2983517
-
Pro
TGG
[ENA]
¡û
>C007143
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
2598424
2598349
-
Pro
TGG
[Ensembl]
¡û
>WENV180097667
MTBK01203252
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
264
189
-
Pro
TGG
[ENA]
¢þ
>W141088602
AUVG01000081
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
50385
50459
+
Pro
TGG
[ENA]
¡û
>WENV181412096
OGCI01081642
[OGCI] hot springs metagenome; Hot spring water
404
479
+
Pro
TGG
[ENA]
¢þ
>W08011386
ABVG01000010
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
2866
2794
-
Pro
TGG
[ENA]
¡û
>W141233390
BAVR01000043
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
19665
19590
-
Pro
TGG
[ENA]
¡û
>W141251490
CBQO010000096
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
48127
48052
-
Pro
TGG
[ENA]
¡û
>WENV170002941
AGTN01174659
[AGTN] bioreactor metagenome; poplar biomass
288
213
-
Pro
TGG
[ENA]
¢þ
>WENV170564067
CZCB01045941
[CZCB] anaerobic digester metagenome; anaerobic digester
770
695
-
Pro
TGG
[ENA]
¢þ
>WENV170564069
CZCB01046010
[CZCB] anaerobic digester metagenome; anaerobic digester
185
110
-
Pro
TGG
[ENA]
¢þ
>WENV170686568
LFRM01151454
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
13693
13618
-
Pro
TGG
[ENA]
¢þ
>WENV170686611
LFRM01154766
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
23059
23134
+
Pro
TGG
[ENA]
¢þ
>WENV170691238
LFRM01388157
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
15642
15717
+
Pro
TGG
[ENA]
¢þ
>WENV170717053
LSQX01022679
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4058
3983
-
Pro
TGG
[ENA]
¢þ
>WENV170720201
LSQX01144982
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2868
2793
-
Pro
TGG
[ENA]
¢þ
>WENV170721140
LSQX01180847
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1138
1063
-
Pro
TGG
[ENA]
¢þ
>WENV170724390
LSQX01303794
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7938
7863
-
Pro
TGG
[ENA]
¢þ
>C181054373
CP021850
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5807 [CP021850]
4386452
4386377
-
Pro
TGG
-
¡û
>C181114023
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
244725
244800
+
Pro
TGG
-
¡û
>W09100442
AABG04000006
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
94811
94886
+
Pro
TGG
[ENA]
¡û
>W09135655
ACVX01000009
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
42411
42486
+
Pro
TGG
[ENA]
¡û
>W143001731
AUVG01000110
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
18644
18569
-
Pro
TGG
[ENA]
¡û
>W1910884626
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
332209
332134
-
Pro
TGG
[ENA]
¡û
>W1910927519
NIOI01000002
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5809 [NIOI]
342565
342640
+
Pro
TGG
[ENA]
¡û
>W1910927549
NIOJ01000006
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5806 [NIOJ]
91745
91820
+
Pro
TGG
[ENA]
¡û
>W1910927606
NIOK01000006
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5808 [NIOK]
81091
81166
+
Pro
TGG
[ENA]
¡û
>W1911496617
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
674807
674882
+
Pro
TGG
[ENA]
¡û
>W1911572329
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
3332789
3332714
-
Pro
TGG
[ENA]
¡û
>C11106481
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
3339553
3339478
-
Pro
TGG
[Ensembl]
¡û
>C161060790
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
3332789
3332714
-
Pro
TGG
-
¡û
>C161076010
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
106380
106455
+
Pro
TGG
[Ensembl]
¡û
>C161076059
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
109516
109591
+
Pro
TGG
[Ensembl]
¡û
>C161097542
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
3355236
3355161
-
Pro
TGG
-
¡û
>W121061293
AJGS01000038
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
156405
156330
-
Pro
TGG
[ENA]
¡û
>W121061382
AJGT01000050
Bacillota
Acetivibrio thermocellus YS [AJGT]
41939
42014
+
Pro
TGG
[ENA]
¡û
>W1610043726
BAZZ01000011
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
116917
116992
+
Pro
TGG
[ENA]
¡û
>C131011027
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
107072
107147
+
Pro
TGG
-
¡û
>C131011893
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
106954
107029
+
Pro
TGG
-
¡û
>W1610605349
LFRV01000120
Bacillota
Clostridiales bacterium DTU069 [LFRV]
15642
15717
+
Pro
TGG
[ENA]
¡û
>W1610605971
LFSL01000073
Bacillota
Clostridiales bacterium DTU058 [LFSL]
23059
23134
+
Pro
TGG
[ENA]
¡û
>W1710040886
BAZZ01000011
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
116917
116992
+
Pro
TGG
[ENA]
¡û
>W1710726669
LFRV01000120
Bacillota
Clostridiales bacterium DTU069 [LFRV]
15642
15717
+
Pro
TGG
[ENA]
¡û
>W1710727258
LFSL01000073
Bacillota
Clostridiales bacterium DTU058 [LFSL]
23059
23134
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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