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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244111 (71 seq.)
>A171003599
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1753360
1753283
-
Pro
GGG
-
¡û
>A171004946
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3630698
3630775
+
Pro
GGG
-
¡û
>A171004996
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3601851
3601928
+
Pro
GGG
-
¡û
>A171005048
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3691506
3691583
+
Pro
GGG
-
¡û
>A171005110
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
2705672
2705595
-
Pro
GGG
-
¡û
>A171005171
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
1784148
1784071
-
Pro
GGG
-
¡û
>A171005257
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
4518498
4518575
+
Pro
GGG
-
¡û
>WENV180345736
OBLN01003705
[OBLN] sediment metagenome; sediment
2381
2304
-
Pro
GGG
[ENA]
¢þ
>At1543
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2027573
2027496
-
Pro
GGG
[Ensembl]
¡û
>WENV170719925
LSQX01134003
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8056
8133
+
Pro
GGG
[ENA]
¢þ
>WENV170784243
MCHG01000208
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
19909
19832
-
Pro
GGG
[ENA]
¢þ
>W1910569264
JJOR01000156
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
28143
28220
+
Pro
GGG
[ENA]
¡û
>W1910569278
JJOS01000012
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
178102
178025
-
Pro
GGG
[ENA]
¡û
>W1910569350
JJOT01000049
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
13191
13114
-
Pro
GGG
[ENA]
¡û
>W1910569379
JJOU01000004
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
9439
9516
+
Pro
GGG
[ENA]
¡û
>W1910569724
JJPA01000217
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
46839
46762
-
Pro
GGG
[ENA]
¡û
>W1910569763
JJPB01000090
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
23810
23733
-
Pro
GGG
[ENA]
¡û
>W1910569787
JJPC01000022
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
9425
9502
+
Pro
GGG
[ENA]
¡û
>W1910569888
JJPD01000208
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
40540
40463
-
Pro
GGG
[ENA]
¡û
>W1910569920
JJPE01000123
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
40561
40484
-
Pro
GGG
[ENA]
¡û
>W1910569976
JJPF01000107
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
23810
23733
-
Pro
GGG
[ENA]
¡û
>W1910570000
JJPG01000039
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
23780
23703
-
Pro
GGG
[ENA]
¡û
>W1910570080
JJPH01000115
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
23811
23734
-
Pro
GGG
[ENA]
¡û
>W1910570127
JJPI01000088
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
88587
88510
-
Pro
GGG
[ENA]
¡û
>W1910570145
JJPJ01000028
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
13191
13114
-
Pro
GGG
[ENA]
¡û
>W1910570211
JJPK01000028
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
13191
13114
-
Pro
GGG
[ENA]
¡û
>W1910570291
JJPL01000151
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
13185
13108
-
Pro
GGG
[ENA]
¡û
>W1910570334
JJPM01000265
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
762
839
+
Pro
GGG
[ENA]
¡û
>W1910570366
JJPN01000068
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
53594
53517
-
Pro
GGG
[ENA]
¡û
>W1910570419
JJPO01000083
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
5233
5156
-
Pro
GGG
[ENA]
¡û
>W1910570451
JJPP01000023
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
8131
8208
+
Pro
GGG
[ENA]
¡û
>W1910570501
JJPQ01000017
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
41131
41054
-
Pro
GGG
[ENA]
¡û
>W1910570581
JJPR01000104
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
9439
9516
+
Pro
GGG
[ENA]
¡û
>W1910570625
JJPS01000119
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
11348
11425
+
Pro
GGG
[ENA]
¡û
>W1910570665
JJPT01000043
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
72289
72212
-
Pro
GGG
[ENA]
¡û
>W1910570733
JJPU01000146
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
8131
8208
+
Pro
GGG
[ENA]
¡û
>W1910570761
JJPV01000029
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
8131
8208
+
Pro
GGG
[ENA]
¡û
>W1910570813
JJPW01000024
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
14745
14668
-
Pro
GGG
[ENA]
¡û
>W1910570865
JJPX01000063
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
40593
40516
-
Pro
GGG
[ENA]
¡û
>W1910570948
JJPY01000123
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
40548
40471
-
Pro
GGG
[ENA]
¡û
>W1910570965
JJPZ01000031
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
40548
40471
-
Pro
GGG
[ENA]
¡û
>W1910571001
JJQA01000002
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
8130
8207
+
Pro
GGG
[ENA]
¡û
>W1910571098
JJQB01000131
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
8130
8207
+
Pro
GGG
[ENA]
¡û
>W1910571116
JJQC01000062
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
8130
8207
+
Pro
GGG
[ENA]
¡û
>W1910571164
JJQD01000054
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
8528
8605
+
Pro
GGG
[ENA]
¡û
>W1910571207
JJQE01000032
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
23885
23808
-
Pro
GGG
[ENA]
¡û
>W1910571279
JJQF01000071
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
9286
9363
+
Pro
GGG
[ENA]
¡û
>W1910571310
JJQG01000051
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
9440
9517
+
Pro
GGG
[ENA]
¡û
>W1910571357
JJQH01000007
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
46867
46790
-
Pro
GGG
[ENA]
¡û
>W1910571414
JJQI01000016
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
9439
9516
+
Pro
GGG
[ENA]
¡û
>W1910571461
JJQJ01000028
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
46903
46826
-
Pro
GGG
[ENA]
¡û
>W1910571559
JJQK01000276
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
23823
23746
-
Pro
GGG
[ENA]
¡û
>W1910571663
JJQM01000133
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
47174
47097
-
Pro
GGG
[ENA]
¡û
>W1910571725
JJQN01000161
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
5233
5156
-
Pro
GGG
[ENA]
¡û
>W1910571744
JJQO01000033
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
27570
27493
-
Pro
GGG
[ENA]
¡û
>W1910571797
JJQP01000007
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
7644
7567
-
Pro
GGG
[ENA]
¡û
>W1910571872
JJQQ01000088
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
9871
9948
+
Pro
GGG
[ENA]
¡û
>W1910571901
JJQR01000003
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
9500
9577
+
Pro
GGG
[ENA]
¡û
>W1910571972
JJQS01000055
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
47154
47077
-
Pro
GGG
[ENA]
¡û
>W1910572005
JJQT01000014
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
46998
46921
-
Pro
GGG
[ENA]
¡û
>W1910572060
JJQU01000063
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
9425
9502
+
Pro
GGG
[ENA]
¡û
>W1910572102
JJQV01000003
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
46891
46814
-
Pro
GGG
[ENA]
¡û
>W1910572163
JJQW01000029
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
119504
119581
+
Pro
GGG
[ENA]
¡û
>W1910572241
JJQX01000252
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
46891
46814
-
Pro
GGG
[ENA]
¡û
>W1910572298
JJQZ01000021
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
46843
46766
-
Pro
GGG
[ENA]
¡û
>W1910572393
JJRA01000140
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
47175
47098
-
Pro
GGG
[ENA]
¡û
>W1910572427
JJRB01000106
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
47174
47097
-
Pro
GGG
[ENA]
¡û
>W1910575070
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
1353258
1353181
-
Pro
GGG
[ENA]
¡û
>W1910694789
MDTP02000078
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
19909
19832
-
Pro
GGG
[ENA]
¡û
>W1610045107
BBBC01000040
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
23405
23328
-
Pro
GGG
[ENA]
¡û
>W1610046897
BBCW01000026
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
8019
7942
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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