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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253528 (45 seq.)
>W131036352
ALVN01000001
Cyanobacteriota
Leptolyngbya sp. PCC 7375 [ALVN]
5515237
5515310
+
Trp
CCA
[ENA]
¡û
>C007401
CP000239
Cyanobacteriota
Synechococcus sp. JA-3-3Ab [CP000239]
1622435
1622360
-
Trp
CCA
[Ensembl]
¡û
>C007434
CP000240
Cyanobacteriota
Synechococcus sp. JA-2-3B'a[2-13] [CP000240]
2987465
2987390
-
Trp
CCA
[Ensembl]
¡û
>C025514
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1354396
1354468
+
Trp
CCA
[Ensembl]
¡û
>WENV180012773
FMSI01019452
[FMSI] soil metagenome; Soil
27474
27548
+
Trp
CCA
[ENA]
¢þ
>WENV180024326
FTIG01122039
[FTIG] metagenome; soil
131
56
-
Trp
CCA
[ENA]
¢þ
>W141038287
ALVL01000024
Cyanobacteriota
Pleurocapsa sp. PCC 7319 [ALVL]
2007880
2007954
+
Trp
CCA
[ENA]
¡û
>W141038602
ALVZ01000213
Cyanobacteriota
Xenococcus sp. PCC 7305 [ALVZ]
36174
36250
+
Trp
CCA
[ENA]
¡û
>W141038704
ALWC01000004
Cyanobacteriota
Synechococcus sp. PCC 7336 [ALWC]
1143230
1143303
+
Trp
CCA
[ENA]
¡û
>WENV180588753
OCOP01187633
[OCOP] marine metagenome; water
74
-1
-
Trp
CCA
[ENA]
¢þ
>W141139150
AWNH01000039
Cyanobacteriota
Leptolyngbya sp. Heron Island J [AWNH]
15909
15982
+
Trp
CCA
[ENA]
¡û
>WENV181412107
OGCI01082794
[OGCI] hot springs metagenome; Hot spring water
164
90
-
Trp
CCA
[ENA]
¢þ
>WENV181414326
OGCL01000212
[OGCL] hot springs metagenome; Hot spring water
65820
65746
-
Trp
CCA
[ENA]
¢þ
>WENV181837813
OGVL01006309
[OGVL] freshwater metagenome; freshwater
693
621
-
Trp
CCA
[ENA]
¢þ
>WENV181840865
OGVP01022601
[OGVP] freshwater metagenome; freshwater
404
476
+
Trp
CCA
[ENA]
¢þ
>WENV181850277
OGWC01011310
[OGWC] freshwater metagenome; freshwater
245
173
-
Trp
CCA
[ENA]
¢þ
>WENV181852732
OGWH01001411
[OGWH] freshwater metagenome; freshwater
393
321
-
Trp
CCA
[ENA]
¢þ
>WENV181854028
OGWJ01006063
[OGWJ] freshwater metagenome; freshwater
439
367
-
Trp
CCA
[ENA]
¢þ
>WENV183747874
PPFU01001530
[PPFU] hypolithon metagenome; Antarctic Hypolithon
572
645
+
Trp
CCA
[ENA]
¢þ
>WENV170000529
AFSR01000092
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
15760
15836
+
Trp
CCA
[ENA]
¢þ
>WENV170000773
AFSR01004108
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
16145
16220
+
Trp
CCA
[ENA]
¢þ
>WENV170000944
AFSR01008783
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
811
735
-
Trp
CCA
[ENA]
¢þ
>WENV170018804
BBPD01001094
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
27681
27609
-
Trp
CCA
[ENA]
¢þ
>WENV170020348
BBPE01006231
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2331
2403
+
Trp
CCA
[ENA]
¢þ
>C181001766
AP017375
Cyanobacteriota
Stanieria sp. NIES-3757 [AP017375]
3630788
3630863
+
Trp
CCA
-
¡û
>C181005009
AP018281
Cyanobacteriota
Chondrocystis sp. NIES-4102 [AP018281]
1786395
1786470
+
Trp
CCA
-
¡û
>C181030468
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
1366622
1366696
+
Trp
CCA
-
¡û
>C191001224
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
1268985
1268911
-
Trp
CCA
-
¡û
>C191085226
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
2462302
2462228
-
Trp
CCA
-
¡û
>W1910002813
AUMZ01000001
Cyanobacteriota
Synechococcus sp. 60AY4M2 [AUMZ]
54295
54370
+
Trp
CCA
[ENA]
¡û
>W1910002871
AUNA01000001
Cyanobacteriota
Synechococcus sp. 63AY4M1 [AUNA]
2614206
2614281
+
Trp
CCA
[ENA]
¡û
>W1910005401
AXUV01000001
Cyanobacteriota
Synechococcus sp. 65AY640 [AXUV]
685311
685236
-
Trp
CCA
[ENA]
¡û
>W1910005418
AXUW01000001
Cyanobacteriota
Synechococcus sp. 65AY6A5 [AXUW]
751722
751797
+
Trp
CCA
[ENA]
¡û
>W1910005479
AXUX01000001
Cyanobacteriota
Synechococcus sp. 63AY4M2 [AXUX]
3005990
3006065
+
Trp
CCA
[ENA]
¡û
>W1910005518
AXZO01000001
Cyanobacteriota
Synechococcus sp. 65AY6Li [AXZO]
2283650
2283725
+
Trp
CCA
[ENA]
¡û
>C141007953
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
687096
687022
-
Trp
CCA
-
¡û
>W1910695497
MDVL01000504
Cyanobacteriota
Euhalothece sp. KZN 001 KZN 001 [MDVL]
3990
3917
-
Trp
CCA
[ENA]
¡û
>W1911219933
NRTA01000012
Cyanobacteriota
Leptolyngbya sp. BC1307 [NRTA]
95186
95259
+
Trp
CCA
[ENA]
¡û
>WENV11100872
AFSR01000092
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
15760
15836
+
Trp
CCA
[ENA]
¡û
>WENV11101116
AFSR01004108
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
16145
16220
+
Trp
CCA
[ENA]
¡û
>WENV11101287
AFSR01008783
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
811
735
-
Trp
CCA
[ENA]
¡û
>W1511343985
JRFE01000026
Cyanobacteriota
Myxosarcina sp. GI1 [JRFE]
188382
188456
+
Trp
CCA
[ENA]
¡û
>C131004330
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
952196
952122
-
Trp
CCA
[Ensembl]
¡û
>C131005035
CP003653
Cyanobacteriota
Stanieria cyanosphaera PCC 7437 [CP003653]
1963667
1963591
-
Trp
CCA
[Ensembl]
¡û
>C131010358
CP003944
Cyanobacteriota
Dactylococcopsis salina PCC 8305 [CP003944]
1433186
1433259
+
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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