This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258997 (107 seq.)
>W1711272755
LZFO01000013
Bacillota
Clostridium acetireducens DSM 10703 [LZFO]
42262
42337
+
Lys
CTT
[ENA]
¡û
>W1711272770
LZFO01000013
Bacillota
Clostridium acetireducens DSM 10703 [LZFO]
43565
43640
+
Lys
CTT
[ENA]
¡û
>W131204206
ATAY01000020
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
248957
248882
-
Lys
CTT
[ENA]
¡û
>W131204207
ATAY01000020
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
245981
245906
-
Lys
CTT
[ENA]
¡û
>W1711903090
MZGX01000034
Bacillota
Ruminiclostridium hungatei [MZGX]
42097
42022
-
Lys
CTT
[ENA]
¡û
>W1711903092
MZGX01000038
Bacillota
Ruminiclostridium hungatei [MZGX]
30199
30274
+
Lys
CTT
[ENA]
¡û
>W131098521
AORV01000021
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
253390
253315
-
Lys
CTT
[ENA]
¡û
>W131098527
AORV01000031
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
200277
200352
+
Lys
CTT
[ENA]
¡û
>w020757
AAVC01000061
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
1227
1150
-
Lys
CTT
[ENA]
¡û
>w020749
AAVC01000053
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
1435
1512
+
Lys
CTT
[ENA]
¡û
>WENV180122560
OASU01002170
[OASU] human gut metagenome; faeces
1542
1617
+
Lys
CTT
[ENA]
¢þ
>WENV180122593
OASU01003584
[OASU] human gut metagenome; faeces
194
269
+
Lys
CTT
[ENA]
¢þ
>WENV180298730
OBJA01567967
[OBJA] soil metagenome; sediment, water from around vicinity
39
114
+
Lys
CTT
[ENA]
¢þ
>WENV180402489
OBRP01002120
[OBRP] human gut metagenome; ENVO:feces
948
873
-
Lys
CTT
[ENA]
¢þ
>WENV180420650
OBVO01016358
[OBVO] human gut metagenome; faeces
59
134
+
Lys
CTT
[ENA]
¢þ
>WENV180445457
OBXA01005507
[OBXA] human gut metagenome; faeces
2917
2842
-
Lys
CTT
[ENA]
¢þ
>WENV180457838
OBXV01000078
[OBXV] human gut metagenome; faeces
64480
64407
-
Lys
CTT
[ENA]
¢þ
>WENV180494845
OCAA01001370
[OCAA] human gut metagenome; faeces
7592
7667
+
Lys
CTT
[ENA]
¢þ
>WENV180503225
OCAM01004999
[OCAM] human gut metagenome; faeces
190
263
+
Lys
CTT
[ENA]
¢þ
>WENV180546551
OCIU01002162
[OCIU] human gut metagenome; human gut
11105
11030
-
Lys
CTT
[ENA]
¢þ
>WENV180599501
OCPP01001366
[OCPP] human gut metagenome; faeces
5296
5221
-
Lys
CTT
[ENA]
¢þ
>WENV180621542
OCQC01002400
[OCQC] human gut metagenome; human gut
3199
3124
-
Lys
CTT
[ENA]
¢þ
>WENV180651837
OCVV010000467
[OCVV] gut metagenome; gut
38177
38102
-
Lys
CTT
[ENA]
¢þ
>WENV180651846
OCVV010000467
[OCVV] gut metagenome; gut
38177
38102
-
Lys
CTT
[ENA]
¢þ
>WENV180829113
ODKA01058602
[ODKA] human metagenome; G_DNA_Stool
429
504
+
Lys
CTT
[ENA]
¢þ
>WENV181417662
OGCM01000451
[OGCM] human gut metagenome; human gut
53923
53998
+
Lys
CTT
[ENA]
¢þ
>WENV181460078
OGEL01002638
[OGEL] metagenome; Human gut stool
107
182
+
Lys
CTT
[ENA]
¢þ
>WENV181581592
OGKA01022450
[OGKA] metagenome; Human gut stool
1373
1298
-
Lys
CTT
[ENA]
¢þ
>WENV181776841
OGRG01010318
[OGRG] human gut metagenome; faeces
536
611
+
Lys
CTT
[ENA]
¢þ
>WENV181798372
OGRV01000100
[OGRV] human gut metagenome; fecal sample 3 from infant 4
23337
23412
+
Lys
CTT
[ENA]
¢þ
>WENV181800326
OGRY01024569
[OGRY] human gut metagenome; faeces
582
657
+
Lys
CTT
[ENA]
¢þ
>WENV181805038
OGSH01000331
[OGSH] human gut metagenome; fecal sample 5 from infant 6
28664
28589
-
Lys
CTT
[ENA]
¢þ
>WENV181805170
OGSH01001131
[OGSH] human gut metagenome; fecal sample 5 from infant 6
4102
4027
-
Lys
CTT
[ENA]
¢þ
>WENV181805752
OGSJ01000398
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
1684
1759
+
Lys
CTT
[ENA]
¢þ
>WENV181805929
OGSJ01001803
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
3771
3696
-
Lys
CTT
[ENA]
¢þ
>WENV181811182
OGSY01000129
[OGSY] human gut metagenome; fecal sample 5 from infant 8
28664
28739
+
Lys
CTT
[ENA]
¢þ
>WENV181811430
OGSY01002044
[OGSY] human gut metagenome; fecal sample 5 from infant 8
3771
3696
-
Lys
CTT
[ENA]
¢þ
>WENV181811484
OGSY01004500
[OGSY] human gut metagenome; fecal sample 5 from infant 8
925
1000
+
Lys
CTT
[ENA]
¢þ
>WENV181811559
OGSY01009315
[OGSY] human gut metagenome; fecal sample 5 from infant 8
218
143
-
Lys
CTT
[ENA]
¢þ
>WENV181821262
OGUE01000170
[OGUE] human gut metagenome; fecal sample 1 from infant 5
1678
1753
+
Lys
CTT
[ENA]
¢þ
>WENV181821336
OGUE01000673
[OGUE] human gut metagenome; fecal sample 1 from infant 5
6040
5965
-
Lys
CTT
[ENA]
¢þ
>WENV181889882
OGXN01001770
[OGXN] human gut metagenome; faeces
104
179
+
Lys
CTT
[ENA]
¢þ
>WENV182398020
OIEN01000258
[OIEN] human gut metagenome; human gut
21941
21866
-
Lys
CTT
[ENA]
¢þ
>WENV182410069
OIFK01000029
[OIFK] human gut metagenome; stool
70545
70470
-
Lys
CTT
[ENA]
¢þ
>WENV182410780
OIFM01000030
[OIFM] human gut metagenome; stool
1316
1241
-
Lys
CTT
[ENA]
¢þ
>WENV182410793
OIFM01000041
[OIFM] human gut metagenome; stool
37698
37623
-
Lys
CTT
[ENA]
¢þ
>W141239284
CAEK01000002
Bacillota
Anaerococcus senegalensis JC48 [CAEK]
122053
121978
-
Lys
CTT
[ENA]
¡û
>WENV182411722
OIFQ01000011
[OIFQ] human gut metagenome; stool
183808
183733
-
Lys
CTT
[ENA]
¢þ
>WENV182411804
OIFQ01000085
[OIFQ] human gut metagenome; stool
23457
23532
+
Lys
CTT
[ENA]
¢þ
>WENV182411931
OIFQ01002566
[OIFQ] human gut metagenome; stool
1315
1240
-
Lys
CTT
[ENA]
¢þ
>W141240901
CAGV01000002
Bacillota
Anaerococcus obesiensis ph10 [CAGV]
17307
17232
-
Lys
CTT
[ENA]
¡û
>WENV182658285
OJMK01043821
[OJMK] human gut metagenome; feces
672
597
-
Lys
CTT
[ENA]
¢þ
>WENV182700501
OJOO01061330
[OJOO] human gut metagenome; human gut
22
97
+
Lys
CTT
[ENA]
¢þ
>W141279289
JAGE01000002
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
789535
789610
+
Lys
CTT
[ENA]
¡û
>W141279296
JAGE01000002
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
129173
129098
-
Lys
CTT
[ENA]
¡û
>WENV182811692
OJXL01003952
[OJXL] human gut metagenome; human gut
536
461
-
Lys
CTT
[ENA]
¢þ
>W141279297
JAGE01000002
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
126376
126301
-
Lys
CTT
[ENA]
¡û
>WENV182815124
OJYO01002471
[OJYO] human gut metagenome; human gut
636
711
+
Lys
CTT
[ENA]
¢þ
>WENV182823732
OKBW01001562
[OKBW] human gut metagenome; human gut
282
357
+
Lys
CTT
[ENA]
¢þ
>WENV182827640
OKDB01001499
[OKDB] human gut metagenome; human gut
2100
2025
-
Lys
CTT
[ENA]
¢þ
>WENV182963254
OKWQ01000021
[OKWQ] human gut metagenome; stool
94356
94431
+
Lys
CTT
[ENA]
¢þ
>WENV182963605
OKWQ01003718
[OKWQ] human gut metagenome; stool
2
77
+
Lys
CTT
[ENA]
¢þ
>WENV182965627
OKWT01000010
[OKWT] human gut metagenome; stool
185241
185166
-
Lys
CTT
[ENA]
¢þ
>WENV182965882
OKWT01001016
[OKWT] human gut metagenome; stool
1730
1655
-
Lys
CTT
[ENA]
¢þ
>WENV183132877
OLOB01010704
[OLOB] human gut metagenome; faeces
762
837
+
Lys
CTT
[ENA]
¢þ
>WENV183173670
OLPD01034947
[OLPD] human gut metagenome; faeces
687
612
-
Lys
CTT
[ENA]
¢þ
>WENV183187269
OLPO01010434
[OLPO] human gut metagenome; faeces
2364
2439
+
Lys
CTT
[ENA]
¢þ
>WENV183241065
OLRA01042279
[OLRA] human gut metagenome; faeces
1207
1282
+
Lys
CTT
[ENA]
¢þ
>WENV183312149
OLVO01056737
[OLVO] human gut metagenome; faeces
851
926
+
Lys
CTT
[ENA]
¢þ
>WENV183470188
OMEJ01004816
[OMEJ] human gut metagenome; feces
1274
1349
+
Lys
CTT
[ENA]
¢þ
>WENV183506495
OMGY01001039
[OMGY] human gut metagenome; human gut
20549
20624
+
Lys
CTT
[ENA]
¢þ
>WENV183538516
OOAH01006797
[OOAH] human gut metagenome; human gut
292
217
-
Lys
CTT
[ENA]
¢þ
>WENV183751340
PPYE01008905
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
300
375
+
Lys
CTT
[ENA]
¢þ
>WENV170003492
AGTN01354492
[AGTN] bioreactor metagenome; poplar biomass
41
116
+
Lys
CTT
[ENA]
¢þ
>WENV170562054
CZCB01000734
[CZCB] anaerobic digester metagenome; anaerobic digester
20468
20543
+
Lys
CTT
[ENA]
¢þ
>WENV170691570
LFRM01403192
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
37643
37718
+
Lys
CTT
[ENA]
¢þ
>WENV170717428
LSQX01034934
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1568
1643
+
Lys
CTT
[ENA]
¢þ
>WENV170718307
LSQX01070076
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8954
9029
+
Lys
CTT
[ENA]
¢þ
>WENV170721872
LSQX01207018
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
23462
23387
-
Lys
CTT
[ENA]
¢þ
>WENV170971830
MTKX01013345
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
125
50
-
Lys
CTT
[ENA]
¢þ
>WENV170977441
MTKZ01023438
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7402
7327
-
Lys
CTT
[ENA]
¢þ
>WENV170978876
MTKZ01065077
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2005
2080
+
Lys
CTT
[ENA]
¢þ
>WENV170979765
MTKZ01105973
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1618
1693
+
Lys
CTT
[ENA]
¢þ
>C191037283
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
1315555
1315630
+
Lys
CTT
-
¡û
>C191037294
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
1316575
1316650
+
Lys
CTT
-
¡û
>W141561062
JHYD01000003
Bacillota
Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 [JHYD]
260185
260260
+
Lys
CTT
[ENA]
¡û
>W141561076
JHYD01000021
Bacillota
Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 [JHYD]
54200
54275
+
Lys
CTT
[ENA]
¡û
>W1910501413
FYAM01000011
Bacillota
Clostridium sp. BSD9I1 [FYAM]
149863
149938
+
Lys
CTT
[ENA]
¡û
>W1910501448
FYAM01000026
Bacillota
Clostridium sp. BSD9I1 [FYAM]
121203
121128
-
Lys
CTT
[ENA]
¡û
>C09103070
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
2219951
2220026
+
Lys
CTT
[Ensembl]
¡û
>C09103071
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
2222891
2222966
+
Lys
CTT
[Ensembl]
¡û
>C09103109
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
732730
732655
-
Lys
CTT
[Ensembl]
¡û
>W1910927558
NIOJ01000014
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5806 [NIOJ]
74928
75003
+
Lys
CTT
[ENA]
¡û
>W1910927574
NIOJ01000031
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5806 [NIOJ]
26863
26938
+
Lys
CTT
[ENA]
¡û
>W1911491396
OAOD01000062
Bacillota
Clostridium peptidivorans [OAOD]
291
216
-
Lys
CTT
[ENA]
¡û
>W1911596993
PNHP01000002
Bacillota
Anaerococcus hydrogenalis UMB0204 [PNHP]
28100
28175
+
Lys
CTT
[ENA]
¡û
>W1810677431
QKMR01000016
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
79877
79952
+
Lys
CTT
[ENA]
¡û
>W1810677432
QKMR01000016
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
80060
80135
+
Lys
CTT
[ENA]
¡û
>W1810759892
QPJT01000013
Bacillota
Anaerobacterium chartisolvens DSM 27016 [QPJT]
66704
66629
-
Lys
CTT
[ENA]
¡û
>W1511187020
JMFY01000031
Bacillota
Clostridium sp. HMP27 [JMFY]
27
102
+
Lys
CTT
[ENA]
¡û
>C121009838
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
2521618
2521693
+
Lys
CTT
[Ensembl]
¡û
>C121009839
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
2524607
2524682
+
Lys
CTT
[Ensembl]
¡û
>C121009866
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
1956494
1956419
-
Lys
CTT
[Ensembl]
¡û
>W1610043757
BBAA01000018
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
29746
29671
-
Lys
CTT
[ENA]
¡û
>W1610605187
LFRR01000107
Bacillota
Clostridiaceae bacterium DTU054 [LFRR]
37643
37718
+
Lys
CTT
[ENA]
¡û
>W1710040917
BBAA01000018
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
29746
29671
-
Lys
CTT
[ENA]
¡û
>W1710726507
LFRR01000107
Bacillota
Clostridiaceae bacterium DTU054 [LFRR]
37643
37718
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK