This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259023 (103 seq.)
>W1711095213
LTGP01000071
Bacillota
Aerococcus loyolae HMSC075D05 [LTGP]
324
398
+
Met
CAT
[ENA]
¡û
>W1711097596
LTIV01000008
Bacillota
Aerococcus mictus HMSC062B07 [LTIV]
98238
98164
-
Met
CAT
[ENA]
¡û
>W1711124855
LUKP01000066
Bacillota
Aerococcus loyolae urinae [LUKP]
360
434
+
Met
CAT
[ENA]
¡û
>W1711938491
NARE01000001
Bacillota
Aerococcus urinae [NARE]
1199
1273
+
Met
CAT
[ENA]
¡û
>WENV180097439
MTBK01188609
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
4579
4654
+
fMet
CAT
[ENA]
¡û
>WENV180097658
MTBK01202366
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
446
521
+
fMet
CAT
[ENA]
¡û
>WENV180098829
MTBK01269535
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
7
82
+
fMet
CAT
[ENA]
¡û
>WENV181344384
OFMK01000506
[OFMK] human gut metagenome; human gut
9420
9345
-
fMet
CAT
[ENA]
¡û
>WENV183747804
PPCM01043189
[PPCM] marine sediment metagenome; marine sediment
2
77
+
fMet
CAT
[ENA]
¡û
>WENV183747811
PPCM01043532
[PPCM] marine sediment metagenome; marine sediment
204
279
+
fMet
CAT
[ENA]
¡û
>WENV170692262
LGOV01001797
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
359
434
+
Met
CAT
[ENA]
¡û
>WENV170695901
LGVE01185384
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
329
404
+
Met
CAT
[ENA]
¡û
>WENV170696028
LGVE01199714
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
151
76
-
Met
CAT
[ENA]
¡û
>WENV170699739
LGVF01643387
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
503
428
-
Met
CAT
[ENA]
¡û
>W1910378010
FUKW01000009
Bacillota
Marinilactibacillus psychrotolerans 42ea [FUKW]
635
709
+
Met
CAT
[ENA]
¡û
>W1911595075
PNGB01000001
Bacillota
Aerococcus urinae UMB0072b [PNGB]
732807
732733
-
Met
CAT
[ENA]
¡û
>W1911595081
PNGB01000001
Bacillota
Aerococcus urinae UMB0072b [PNGB]
732264
732190
-
Met
CAT
[ENA]
¡û
>W1911597119
PNHR01000032
Bacillota
Aerococcus urinae UMB0080 [PNHR]
4826
4752
-
Met
CAT
[ENA]
¡û
>W1911597177
PNHS01000022
Bacillota
Aerococcus urinae UMB0088 [PNHS]
7871
7797
-
Met
CAT
[ENA]
¡û
>W1810186318
PKGV01000001
Bacillota
Aerococcus mictus UMB0072 [PKGV]
733836
733762
-
Met
CAT
[ENA]
¡û
>W1810186401
PKGW01000034
Bacillota
Aerococcus loyolae UMB0232 [PKGW]
4822
4748
-
Met
CAT
[ENA]
¡û
>W1810186456
PKGX01000033
Bacillota
Aerococcus loyolae UMB0126 [PKGX]
1161
1235
+
Met
CAT
[ENA]
¡û
>W1810186515
PKGY01000005
Bacillota
Aerococcus sanguinicola UMB0139 [PKGY]
117776
117702
-
Met
CAT
[ENA]
¡û
>W1810186522
PKGY01000005
Bacillota
Aerococcus sanguinicola UMB0139 [PKGY]
117135
117061
-
Met
CAT
[ENA]
¡û
>W1810703087
QMGT01000001
Bacillota
Aerococcus mictus UMB0071 [QMGT]
1227
1301
+
Met
CAT
[ENA]
¡û
>W1810703168
QMGU01000009
Bacillota
Aerococcus mictus UMB0239 [QMGU]
1227
1301
+
Met
CAT
[ENA]
¡û
>W1810703218
QMGV01000013
Bacillota
Aerococcus mictus UMB0267 [QMGV]
1233
1307
+
Met
CAT
[ENA]
¡û
>W1810703270
QMGW01000012
Bacillota
Aerococcus tenax UMB0337 [QMGW]
1201
1275
+
Met
CAT
[ENA]
¡û
>W1810703340
QMGX01000010
Bacillota
Aerococcus urinae UMB0509 [QMGX]
1201
1275
+
Met
CAT
[ENA]
¡û
>W1810703395
QMGY01000004
Bacillota
Aerococcus urinae UMB0553 [QMGY]
1199
1273
+
Met
CAT
[ENA]
¡û
>W1810703453
QMGZ01000004
Bacillota
Aerococcus urinae UMB0574 [QMGZ]
1199
1273
+
Met
CAT
[ENA]
¡û
>W1810703503
QMHA01000007
Bacillota
Aerococcus urinae UMB0621 [QMHA]
1199
1273
+
Met
CAT
[ENA]
¡û
>W1810703540
QMHB01000001
Bacillota
Aerococcus urinae UMB0722 [QMHB]
1199
1273
+
Met
CAT
[ENA]
¡û
>W1810703596
QMHC01000001
Bacillota
Aerococcus mictus UMB1016 [QMHC]
1227
1301
+
Met
CAT
[ENA]
¡û
>W1810703669
QMHD01000012
Bacillota
Aerococcus tenax UMB1741 [QMHD]
1201
1275
+
Met
CAT
[ENA]
¡û
>W1810703743
QMHE01000006
Bacillota
Aerococcus mictus UMB2325 [QMHE]
1227
1301
+
Met
CAT
[ENA]
¡û
>W1810703776
QMHF01000002
Bacillota
Aerococcus mictus UMB2354 [QMHF]
377404
377330
-
Met
CAT
[ENA]
¡û
>W1810703832
QMHG01000003
Bacillota
Aerococcus mictus UMB2879 [QMHG]
1227
1301
+
Met
CAT
[ENA]
¡û
>W1810703886
QMHH01000001
Bacillota
Aerococcus urinae UMB3440 [QMHH]
1199
1273
+
Met
CAT
[ENA]
¡û
>W1810703954
QMHI01000005
Bacillota
Aerococcus urinae UMB3669 [QMHI]
1201
1275
+
Met
CAT
[ENA]
¡û
>W1810704031
QMHJ01000008
Bacillota
Aerococcus loyolae UMB5628 [QMHJ]
1201
1275
+
Met
CAT
[ENA]
¡û
>W1810704073
QMHK01000019
Bacillota
Aerococcus mictus UMB6497 [QMHK]
1227
1301
+
Met
CAT
[ENA]
¡û
>W1810704133
QMHL01000006
Bacillota
Aerococcus mictus UMB7382 [QMHL]
1201
1275
+
Met
CAT
[ENA]
¡û
>W1810704200
QMHM01000030
Bacillota
Aerococcus loyolae UMB7480 [QMHM]
1201
1275
+
Met
CAT
[ENA]
¡û
>W2011204122
PNGB01000001
Bacillota
Aerococcus urinae UMB0072b [PNGB]
732807
732733
-
fMet
CAT
[ENA]
¡û
>W2011206016
PNHR01000032
Bacillota
Aerococcus urinae UMB0080 [PNHR]
4826
4752
-
fMet
CAT
[ENA]
¡û
>W2011206074
PNHS01000022
Bacillota
Aerococcus urinae UMB0088 [PNHS]
7871
7797
-
fMet
CAT
[ENA]
¡û
>W2012210737
VYVI01000013
Bacillota
Aerococcus urinae UMB8711 [VYVI]
1039
1113
+
fMet
CAT
[ENA]
¡û
>W2012210828
VYVK01000016
Bacillota
Aerococcus urinae UMB8662 [VYVK]
21669
21595
-
fMet
CAT
[ENA]
¡û
>W2012210971
VYVN01000025
Bacillota
Aerococcus urinae UMB8614 [VYVN]
1040
1114
+
fMet
CAT
[ENA]
¡û
>W2012211225
VYVT01000043
Bacillota
Aerococcus urinae UMB7049 [VYVT]
4963
4889
-
fMet
CAT
[ENA]
¡û
>W2012211569
VYWA01000029
Bacillota
Aerococcus urinae UMB2126 [VYWA]
13307
13233
-
fMet
CAT
[ENA]
¡û
>W2012211751
VYWK01000014
Bacillota
Aerococcus urinae UMB970 [VYWK]
495
569
+
fMet
CAT
[ENA]
¡û
>W2012211808
VYWL01000011
Bacillota
Aerococcus urinae UMB637 [VYWL]
1040
1114
+
fMet
CAT
[ENA]
¡û
>W2110110042
CAJHLF010000020
Bacillota
Aerococcus urinae [CAJHLF]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110110098
CAJHLG010000016
Bacillota
Aerococcus urinae [CAJHLG]
3347
3273
-
fMet
CAT
[ENA]
¡û
>W2110110129
CAJHLH010000009
Bacillota
Aerococcus urinae [CAJHLH]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110110185
CAJHLI010000010
Bacillota
Aerococcus urinae [CAJHLI]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110110260
CAJHLJ010000009
Bacillota
Aerococcus urinae [CAJHLJ]
1177
1251
+
fMet
CAT
[ENA]
¡û
>W2110110289
CAJHLK010000001
Bacillota
Aerococcus urinae [CAJHLK]
518202
518128
-
fMet
CAT
[ENA]
¡û
>W2110110364
CAJHLL010000002
Bacillota
Aerococcus urinae [CAJHLL]
740248
740174
-
fMet
CAT
[ENA]
¡û
>W2110110433
CAJHLM010000010
Bacillota
Aerococcus urinae [CAJHLM]
1177
1251
+
fMet
CAT
[ENA]
¡û
>W2110110465
CAJHLN010000002
Bacillota
Aerococcus urinae [CAJHLN]
221790
221716
-
fMet
CAT
[ENA]
¡û
>W2110110768
CAJHLS010000004
Bacillota
Aerococcus urinae [CAJHLS]
423
497
+
fMet
CAT
[ENA]
¡û
>W2110110816
CAJHLT010000010
Bacillota
Aerococcus urinae [CAJHLT]
56951
56877
-
fMet
CAT
[ENA]
¡û
>W2110110881
CAJHLU010000043
Bacillota
Aerococcus urinae [CAJHLU]
423
497
+
fMet
CAT
[ENA]
¡û
>W2110110926
CAJHLV010000009
Bacillota
Aerococcus urinae [CAJHLV]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110110977
CAJHMS010000022
Bacillota
Aerococcus urinae [CAJHMS]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110111038
CAJHMT010000029
Bacillota
Aerococcus urinae [CAJHMT]
688
614
-
fMet
CAT
[ENA]
¡û
>W2110111094
CAJHMU010000013
Bacillota
Aerococcus urinae [CAJHMU]
1151
1225
+
fMet
CAT
[ENA]
¡û
>W2110111126
CAJHMV010000001
Bacillota
Aerococcus urinae [CAJHMV]
331076
331002
-
fMet
CAT
[ENA]
¡û
>W2110111189
CAJHMW010000002
Bacillota
Aerococcus urinae [CAJHMW]
1177
1251
+
fMet
CAT
[ENA]
¡û
>W2110111247
CAJHMX010000002
Bacillota
Aerococcus urinae [CAJHMX]
1177
1251
+
fMet
CAT
[ENA]
¡û
>W2110111303
CAJHMY010000002
Bacillota
Aerococcus urinae [CAJHMY]
1177
1251
+
fMet
CAT
[ENA]
¡û
>W2110111364
CAJHMZ010000003
Bacillota
Aerococcus urinae [CAJHMZ]
221790
221716
-
fMet
CAT
[ENA]
¡û
>W2110111492
CAJHNB010000014
Bacillota
Aerococcus urinae [CAJHNB]
1151
1225
+
fMet
CAT
[ENA]
¡û
>W2110111533
CAJHNC010000008
Bacillota
Aerococcus urinae [CAJHNC]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110111599
CAJHND010000008
Bacillota
Aerococcus urinae [CAJHND]
1177
1251
+
fMet
CAT
[ENA]
¡û
>W2110111635
CAJHNE010000006
Bacillota
Aerococcus urinae [CAJHNE]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110111689
CAJHNF010000009
Bacillota
Aerococcus urinae [CAJHNF]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110112205
CAJHOT010000015
Bacillota
Aerococcus urinae [CAJHOT]
423
497
+
fMet
CAT
[ENA]
¡û
>W2110112241
CAJHOU010000011
Bacillota
Aerococcus urinae [CAJHOU]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110112290
CAJHOV010000006
Bacillota
Aerococcus urinae [CAJHOV]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110112356
CAJHOW010000009
Bacillota
Aerococcus urinae [CAJHOW]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110112396
CAJHOX010000008
Bacillota
Aerococcus urinae [CAJHOX]
98467
98393
-
fMet
CAT
[ENA]
¡û
>W2110112474
CAJHOY010000012
Bacillota
Aerococcus urinae [CAJHOY]
1148
1222
+
fMet
CAT
[ENA]
¡û
>W2110112507
CAJHOZ010000008
Bacillota
Aerococcus urinae [CAJHOZ]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110112557
CAJHPA010000001
Bacillota
Aerococcus urinae [CAJHPA]
518203
518129
-
fMet
CAT
[ENA]
¡û
>W2110112613
CAJHPB010000007
Bacillota
Aerococcus urinae [CAJHPB]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110112682
CAJHPC010000027
Bacillota
Aerococcus urinae [CAJHPC]
695
621
-
fMet
CAT
[ENA]
¡û
>W2110112720
CAJHPD010000002
Bacillota
Aerococcus urinae [CAJHPD]
1149
1223
+
fMet
CAT
[ENA]
¡û
>W2110112772
CAJHPE010000006
Bacillota
Aerococcus urinae [CAJHPE]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110112837
CAJHPF010000011
Bacillota
Aerococcus urinae [CAJHPF]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110112881
CAJHPG010000010
Bacillota
Aerococcus urinae [CAJHPG]
421
495
+
fMet
CAT
[ENA]
¡û
>W2110617844
JAHLMC010000004
Bacillota
Aerococcus urinae UMB7783-2Q [JAHLMC]
1038
1112
+
fMet
CAT
[ENA]
¡û
>C211211741
CP065662
Bacillota
Aerococcus urinae FDAARGOS_911 [CP065662]
1459844
1459770
-
fMet
CAT
-
¡û
>C241273586
CP126958
Bacillota
Aerococcus loyolae UMB0080 [CP126958]
765793
765867
+
fMet
CAT
-
¡û
>C241276100
CP127213
Bacillota
Aerococcus loyolae UMB0509 [CP127213]
753564
753638
+
fMet
CAT
-
¡û
>C241276876
CP127382
Bacillota
Aerococcus tenax UMB3669 [CP127382]
752288
752362
+
fMet
CAT
-
¡û
>C241306011
CP132985
Bacillota
Aerococcus mictus UMB3440 [CP132985]
898173
898247
+
fMet
CAT
-
¡û
>C11101376
CP002512
Bacillota
Aerococcus sp. Group 1 ACS-120-V-Col10a [CP002512]
1337793
1337719
-
Met
CAT
[Ensembl]
¡û
>W1610067122
BCQH01000001
Bacillota
Aerococcus urinae NBRC 15544 = CCUG 36881 [BCQH]
1403
1477
+
Met
CAT
[ENA]
¡û
>W1610935827
LUKP01000066
Bacillota
Aerococcus loyolae urinae [LUKP]
360
434
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK