This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26218 (119 seq.)
>W1711138983
LVEO01000018
Bacteroidota
Flavobacterium glycines [LVEO]
572554
572643
+
Ser
GGA
[ENA]
¡û
>W131224683
AUCZ01000007
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
121614
121525
-
Ser
GGA
[ENA]
¡û
>W131225224
AUDK01000001
Bacteroidota
Flavobacterium daejeonense DSM 17708 [AUDK]
368410
368323
-
Ser
GGA
[ENA]
¡û
>W1711713284
MTCY01000008
Bacteroidota
Flavobacterium oreochromis columnare [MTCY]
25725
25636
-
Ser
GGA
[ENA]
¡û
>W1711713363
MTCZ01000113
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
710
621
-
Ser
GGA
[ENA]
¡û
>W1711713388
MTDA01000003
Bacteroidota
Flavobacterium covae columnare [MTDA]
96477
96566
+
Ser
GGA
[ENA]
¡û
>W1711713454
MTDC01000020
Bacteroidota
Flavobacterium covae columnare [MTDC]
20645
20734
+
Ser
GGA
[ENA]
¡û
>W1711713494
MTDD01000005
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
25288
25199
-
Ser
GGA
[ENA]
¡û
>W1711737995
MUAW01000002
Bacteroidota
Flavobacterium columnare [MUAW]
202408
202497
+
Ser
GGA
[ENA]
¡û
>C171067653
CP017774
Bacteroidota
Flavobacterium commune PK15 [CP017774]
1198870
1198781
-
Ser
GGA
-
¡û
>C171086277
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
1902743
1902654
-
Ser
GGA
-
¡û
>WENV180038712
LLBY010002790
[LLBY] soil metagenome; soil from tomato rhizosphere
2629
2716
+
Ser
GGA
[ENA]
¡û
>WENV180039134
LLBY010029394
[LLBY] soil metagenome; soil from tomato rhizosphere
5160
5247
+
Ser
GGA
[ENA]
¡û
>WENV180041541
LLBZ010176464
[LLBZ] soil metagenome; soil from tomato rhizosphere
95
8
-
Ser
GGA
[ENA]
¡û
>WENV181836137
OGVJ01001048
[OGVJ] freshwater metagenome; freshwater
624
537
-
Ser
GGA
[ENA]
¡û
>WENV181837054
OGVK01001369
[OGVK] freshwater metagenome; freshwater
2006
2093
+
Ser
GGA
[ENA]
¡û
>ENV08002208
ABON01028018
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
18
105
+
Ser
GGA
[ENA]
¡û
>C191008572
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
1630438
1630525
+
Ser
GGA
-
¡û
>W141726662
JNCA01000001
Bacteroidota
Flavobacterium seoulense EM1321 [JNCA]
243399
243488
+
Ser
GGA
[ENA]
¡û
>W1910183306
BJNP01000026
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
14312
14225
-
Ser
GGA
[ENA]
¡û
>W1910578020
JUIX01000027
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
23395
23308
-
Ser
GGA
[ENA]
¡û
>W1910804160
MTCX01000032
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
5040
5127
+
Ser
GGA
[ENA]
¡û
>W1910804207
MTDB01000004
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
96372
96459
+
Ser
GGA
[ENA]
¡û
>W1910809015
MUGU01000101
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
939
852
-
Ser
GGA
[ENA]
¡û
>W1911139438
NOXX01000168
Bacteroidota
Flavobacterium sp. TH167 [NOXX]
10828
10741
-
Ser
GGA
[ENA]
¡û
>W1911533968
OLKH01000051
Bacteroidota
Flavobacterium columnare [OLKH]
43651
43738
+
Ser
GGA
[ENA]
¡û
>W1911564350
PCMX01000113
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
21195
21282
+
Ser
GGA
[ENA]
¡û
>W1810260940
PQNY01000016
Bacteroidota
Flavobacterium croceum DSM 17960 [PQNY]
38813
38900
+
Ser
GGA
[ENA]
¡û
>W1810355123
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
305694
305781
+
Ser
GGA
[ENA]
¡û
>W2010096921
BJNP01000026
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
14312
14225
-
Ser
GGA
[ENA]
¡û
>W2010102779
BJXE01000038
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [BJXE]
23419
23506
+
Ser
GGA
[ENA]
¡û
>W2010437926
JAAAPM020000005
Bacteroidota
Flavobacterium sp. BBQ-18 [JAAAPM]
154225
154312
+
Ser
GGA
[ENA]
¡û
>W2010442109
JAABLM010000007
Bacteroidota
Flavobacterium sp. NST-5 [JAABLM]
5413
5500
+
Ser
GGA
[ENA]
¡û
>W2010490115
JAAJBU010000003
Bacteroidota
Flavobacterium sp. CYK-4 [JAAJBU]
154697
154784
+
Ser
GGA
[ENA]
¡û
>W2010537337
JAAQQU010000104
Bacteroidota
Flavobacterium sp. J49 [JAAQQU]
664054
663967
-
Ser
GGA
[ENA]
¡û
>W2010595919
JABEVX010000001
Bacteroidota
Flavobacterium sp. IMCC34852 [JABEVX]
259179
259266
+
Ser
GGA
[ENA]
¡û
>W2010663862
JACBJI010000002
Bacteroidota
Flavobacterium sp. MAH-1 [JACBJI]
530197
530110
-
Ser
GGA
[ENA]
¡û
>W2010762257
JUIX01000027
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
23395
23308
-
Ser
GGA
[ENA]
¡û
>W2010911982
MTCX01000032
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
5040
5127
+
Ser
GGA
[ENA]
¡û
>W2010912029
MTDB01000004
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
96372
96459
+
Ser
GGA
[ENA]
¡û
>W2010913878
MUGU01000101
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
939
852
-
Ser
GGA
[ENA]
¡û
>W2011014938
NOXX01000168
Bacteroidota
Flavobacterium sp. TH167 [NOXX]
10828
10741
-
Ser
GGA
[ENA]
¡û
>W2011166725
OLKH01000051
Bacteroidota
Flavobacterium columnare [OLKH]
43651
43738
+
Ser
GGA
[ENA]
¡û
>W2011176730
PCMX01000113
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
21195
21282
+
Ser
GGA
[ENA]
¡û
>W2011375077
RBKX01000001
Bacteroidota
Flavobacterium sp. 102 [RBKX]
1103739
1103826
+
Ser
GGA
[ENA]
¡û
>W2011479764
RQSM01000003
Bacteroidota
Flavobacterium columnare ARS1 [RQSM]
931400
931487
+
Ser
GGA
[ENA]
¡û
>W2011492337
RWGX01000003
Bacteroidota
Flavobacterium columnare BGFS27 [RWGX]
416505
416418
-
Ser
GGA
[ENA]
¡û
>W2011521933
SACJ01000001
Bacteroidota
Flavobacterium sp. BBQ-12 [SACJ]
232826
232739
-
Ser
GGA
[ENA]
¡û
>W2011532184
SBKN01000001
Bacteroidota
Flavobacterium sp. WWJ-16 [SBKN]
880353
880440
+
Ser
GGA
[ENA]
¡û
>W2011615972
SJZD01000003
Bacteroidota
Flavobacterium sp. H122 [SJZD]
277264
277351
+
Ser
GGA
[ENA]
¡û
>W2011678339
SRKT01000004
Bacteroidota
Flavobacterium columnare 1723 [SRKT]
418391
418304
-
Ser
GGA
[ENA]
¡û
>W2011958367
VAHC01000004
Bacteroidota
Flavobacterium sp. GSA192 [VAHC]
279357
279270
-
Ser
GGA
[ENA]
¡û
>W2012198210
VWSG01000001
Bacteroidota
Flavobacterium sp. SNL9 [VWSG]
49183
49270
+
Ser
GGA
[ENA]
¡û
>W2012377961
WMHF01000002
Bacteroidota
Flavobacterium columnare SP1809 [WMHF]
55588
55675
+
Ser
GGA
[ENA]
¡û
>W2012378015
WMHG01000002
Bacteroidota
Flavobacterium columnare SP1802 [WMHG]
93780
93693
-
Ser
GGA
[ENA]
¡û
>W2012378085
WMHH01000012
Bacteroidota
Flavobacterium columnare CC1808 [WMHH]
26563
26476
-
Ser
GGA
[ENA]
¡û
>W2012378144
WMHI01000012
Bacteroidota
Flavobacterium columnare CC1805 [WMHI]
71892
71979
+
Ser
GGA
[ENA]
¡û
>W2012378195
WMHJ01000011
Bacteroidota
Flavobacterium columnare CC1803 [WMHJ]
71892
71979
+
Ser
GGA
[ENA]
¡û
>W2012378251
WMHK01000011
Bacteroidota
Flavobacterium columnare CC1802 [WMHK]
26563
26476
-
Ser
GGA
[ENA]
¡û
>W2012398585
WNKE01000002
Bacteroidota
Flavobacterium columnare SP1805 [WNKE]
93780
93693
-
Ser
GGA
[ENA]
¡û
>W2110026618
BMIM01000003
Bacteroidota
Flavobacterium lutivivi CGMCC 1.15347 [BMIM]
41985
42072
+
Ser
GGA
[ENA]
¡û
>W2110071648
BPLU01000035
Bacteroidota
Flavobacterium sp. UMI-01 [BPLU]
107306
107393
+
Ser
GGA
[ENA]
¡û
>W2110160680
JAAVIY010000002
Bacteroidota
Flavobacterium sp. D33 [JAAVIY]
349622
349709
+
Ser
GGA
[ENA]
¡û
>W2110337745
JADMKY010000098
Bacteroidota
Flavobacterium sp. J49 [JADMKY]
664054
663967
-
Ser
GGA
[ENA]
¡û
>W2110409412
JAEHFV010000002
Bacteroidota
Flavobacterium agrisoli SE-1-e [JAEHFV]
137835
137748
-
Ser
GGA
[ENA]
¡û
>C211030173
CP013012
Bacteroidota
Flavobacterium columnare B185R [CP013012]
1635591
1635678
+
Ser
GGA
-
¡û
>C211092049
CP051861
Bacteroidota
Flavobacterium columnare FCO-F2 [CP051861]
2070586
2070499
-
Ser
GGA
-
¡û
>C211097372
CP054494
Bacteroidota
Flavobacterium columnare F2S17 [CP054494]
2070589
2070502
-
Ser
GGA
-
¡û
>C211097457
CP054495
Bacteroidota
Flavobacterium columnare F2S4 [CP054495]
2070583
2070496
-
Ser
GGA
-
¡û
>C211097542
CP054496
Bacteroidota
Flavobacterium columnare F2R74 [CP054496]
2070589
2070502
-
Ser
GGA
-
¡û
>C211097627
CP054497
Bacteroidota
Flavobacterium columnare F2R72 [CP054497]
2070583
2070496
-
Ser
GGA
-
¡û
>C211097712
CP054498
Bacteroidota
Flavobacterium columnare F2R70 [CP054498]
2070591
2070504
-
Ser
GGA
-
¡û
>C211097797
CP054499
Bacteroidota
Flavobacterium columnare F2R68 [CP054499]
2070583
2070496
-
Ser
GGA
-
¡û
>C211097882
CP054500
Bacteroidota
Flavobacterium columnare F2R67 [CP054500]
2070578
2070491
-
Ser
GGA
-
¡û
>C211097967
CP054501
Bacteroidota
Flavobacterium columnare F2R66 [CP054501]
2070569
2070482
-
Ser
GGA
-
¡û
>C211098052
CP054502
Bacteroidota
Flavobacterium columnare F2R65 [CP054502]
2070589
2070502
-
Ser
GGA
-
¡û
>C211098137
CP054503
Bacteroidota
Flavobacterium columnare F2R64 [CP054503]
2070578
2070491
-
Ser
GGA
-
¡û
>C211098222
CP054504
Bacteroidota
Flavobacterium columnare F2R62 [CP054504]
2070574
2070487
-
Ser
GGA
-
¡û
>C211098307
CP054505
Bacteroidota
Flavobacterium columnare F2R60 [CP054505]
2070589
2070502
-
Ser
GGA
-
¡û
>C211098392
CP054506
Bacteroidota
Flavobacterium columnare F2R58 [CP054506]
2070590
2070503
-
Ser
GGA
-
¡û
>C211098454
CP054507
Bacteroidota
Flavobacterium columnare F9S17 [CP054507]
1630437
1630524
+
Ser
GGA
-
¡û
>C211098543
CP054508
Bacteroidota
Flavobacterium columnare F9S15 [CP054508]
1630398
1630485
+
Ser
GGA
-
¡û
>C211098632
CP054509
Bacteroidota
Flavobacterium columnare F9R78 [CP054509]
1630398
1630485
+
Ser
GGA
-
¡û
>C211098721
CP054510
Bacteroidota
Flavobacterium columnare F9R75 [CP054510]
1630393
1630480
+
Ser
GGA
-
¡û
>C211098810
CP054511
Bacteroidota
Flavobacterium columnare F9R72 [CP054511]
1630398
1630485
+
Ser
GGA
-
¡û
>C211098899
CP054512
Bacteroidota
Flavobacterium columnare F9R69 [CP054512]
1630398
1630485
+
Ser
GGA
-
¡û
>C211098988
CP054513
Bacteroidota
Flavobacterium columnare F9R66 [CP054513]
1630398
1630485
+
Ser
GGA
-
¡û
>C211099077
CP054514
Bacteroidota
Flavobacterium columnare F9R64 [CP054514]
1630398
1630485
+
Ser
GGA
-
¡û
>C211099166
CP054516
Bacteroidota
Flavobacterium columnare F9R58 [CP054516]
1630393
1630480
+
Ser
GGA
-
¡û
>C211099255
CP054517
Bacteroidota
Flavobacterium columnare F9R56 [CP054517]
1630397
1630484
+
Ser
GGA
-
¡û
>C211099344
CP054518
Bacteroidota
Flavobacterium columnare FCO-F9 [CP054518]
1630431
1630518
+
Ser
GGA
-
¡û
>C211238394
CP067377
Bacteroidota
Flavobacterium columnare Costa Rica 04-02-TN [CP067377]
1424434
1424347
-
Ser
GGA
-
¡û
>W2110751577
NASZ01000016
Bacteroidota
Flavobacterium pokkalii L1I52 [NASZ]
39799
39712
-
Ser
GGA
[ENA]
¡û
>C231315552
CP092370
Bacteroidota
Flavobacterium sp. CBA20B-1 [CP092370]
1626566
1626479
-
Ser
GGA
-
¡û
>W2110757215
PPVA01000003
Bacteroidota
Flavobacterium columnare JIP P11/91 [PPVA]
156178
156265
+
Ser
GGA
[ENA]
¡û
>W2110757271
PPVB01000001
Bacteroidota
Flavobacterium columnare CDI-A [PPVB]
156615
156702
+
Ser
GGA
[ENA]
¡û
>W2110757315
PPVC01000002
Bacteroidota
Flavobacterium columnare 04017018 [PPVC]
3326
3239
-
Ser
GGA
[ENA]
¡û
>C231452585
CP102382
Bacteroidota
Myroides sp. SCSIO 72103 [CP102382]
611705
611792
+
Ser
GGA
-
¡û
>C231524602
CP109993
Bacteroidota
Flavobacterium sp. N1719 [CP109993]
461612
461525
-
Ser
GGA
-
¡û
>C231524667
CP109995
Bacteroidota
Flavobacterium sp. N1846 [CP109995]
1097942
1098029
+
Ser
GGA
-
¡û
>C231525027
CP110002
Bacteroidota
Flavobacterium sp. N2155 [CP110002]
1626579
1626492
-
Ser
GGA
-
¡û
>C231558510
CP114289
Bacteroidota
Flavobacterium sp. IMCC36791 [CP114289]
3626680
3626593
-
Ser
GGA
-
¡û
>C121009088
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
1230379
1230468
+
Ser
GGA
[Ensembl]
¡û
>C121009111
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
3157721
3157632
-
Ser
GGA
[Ensembl]
¡û
>C161063758
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
343913
343824
-
Ser
GGA
[Ensembl]
¡û
>C161083170
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
918345
918434
+
Ser
GGA
-
¡û
>C161095510
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2819028
2819117
+
Ser
GGA
-
¡û
>W1610534933
JRLG01000015
Bacteroidota
Flavobacterium daejeonense [JRLG]
52862
52951
+
Ser
GGA
[ENA]
¡û
>W1610535038
JRLW01000002
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
158621
158710
+
Ser
GGA
[ENA]
¡û
>W1610949991
LVEO01000018
Bacteroidota
Flavobacterium glycines [LVEO]
572554
572643
+
Ser
GGA
[ENA]
¡û
>W1710519202
FNEO01000001
Bacteroidota
Flavobacterium glycines [FNEO]
322828
322739
-
Ser
GGA
[ENA]
¡û
>W1710540836
FNXE01000004
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
25200
25111
-
Ser
GGA
[ENA]
¡û
>W1710570702
FOVI01000001
Bacteroidota
Paenimyroides ummariense [FOVI]
288109
288020
-
Ser
GGA
[ENA]
¡û
>W1710584547
FQVQ01000001
Bacteroidota
Flavobacterium fontis [FQVQ]
362946
363035
+
Ser
GGA
[ENA]
¡û
>W1710588397
FQZI01000001
Bacteroidota
Flavobacterium terrae [FQZI]
717210
717299
+
Ser
GGA
[ENA]
¡û
>W1710591946
FRCC01000004
Bacteroidota
Flavobacterium flevense [FRCC]
48490
48579
+
Ser
GGA
[ENA]
¡û
>W1710637169
JRLG01000015
Bacteroidota
Flavobacterium daejeonense [JRLG]
52862
52951
+
Ser
GGA
[ENA]
¡û
>W1710637274
JRLW01000002
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
158621
158710
+
Ser
GGA
[ENA]
¡û
>W1710637431
JRLZ01000018
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
112891
112802
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK