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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26229 (98 seq.)
>W1711066333
LSCT01000120
Bacteroidota
Bacteroidales bacterium KA00344 [LSCT]
106643
106732
+
Ser
GCT
[ENA]
¡û
>W131206220
ATFN01000006
Bacteroidota
Hoylesella oralis HGA0225 [ATFN]
13771
13682
-
Ser
GCT
[ENA]
¡û
>WENV180001586
FLNX01002707
[FLNX] bioreactor metagenome; Moose rumen
59102
59189
+
Ser
GCT
[ENA]
¡û
>WENV180098177
MTBK01232015
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
33444
33531
+
Ser
GCT
[ENA]
¡û
>WENV180282072
OBIB01001804
[OBIB] human gut metagenome; human gut
3274
3361
+
Ser
GCT
[ENA]
¡û
>WENV180338972
OBLI01001621
[OBLI] pig gut metagenome; faeces
152
65
-
Ser
GCT
[ENA]
¡û
>WENV180338996
OBLI01001658
[OBLI] pig gut metagenome; faeces
89
2
-
Ser
GCT
[ENA]
¡û
>WENV180340496
OBLI01026867
[OBLI] pig gut metagenome; faeces
1949
2036
+
Ser
GCT
[ENA]
¡û
>WENV180597843
OCPL01060998
[OCPL] human gut metagenome; ENVO:feces
273
186
-
Ser
GCT
[ENA]
¡û
>WENV180659345
OCVV010853368
[OCVV] gut metagenome; gut
4238
4325
+
Ser
GCT
[ENA]
¡û
>WENV180659346
OCVV010853368
[OCVV] gut metagenome; gut
4238
4325
+
Ser
GCT
[ENA]
¡û
>WENV180668137
OCVV011252901
[OCVV] gut metagenome; gut
11384
11297
-
Ser
GCT
[ENA]
¡û
>WENV180668139
OCVV011252901
[OCVV] gut metagenome; gut
11384
11297
-
Ser
GCT
[ENA]
¡û
>WENV180684475
OCVV012857967
[OCVV] gut metagenome; gut
1378
1465
+
Ser
GCT
[ENA]
¡û
>WENV180684478
OCVV012857967
[OCVV] gut metagenome; gut
1378
1465
+
Ser
GCT
[ENA]
¡û
>WENV180712472
ODFT01000875
[ODFT] human metagenome; G_DNA_Posterior fornix
4902
4815
-
Ser
GCT
[ENA]
¡û
>WENV180721849
ODGL01018986
[ODGL] human metagenome; G_DNA_Subgingival plaque
428
515
+
Ser
GCT
[ENA]
¡û
>WENV180726654
ODGU01000236
[ODGU] human metagenome; G_DNA_Supragingival plaque
6618
6705
+
Ser
GCT
[ENA]
¡û
>WENV180734483
ODGZ01009972
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2410
2323
-
Ser
GCT
[ENA]
¡û
>WENV180735385
ODGZ01187001
[ODGZ] human metagenome; G_DNA_Supragingival plaque
150
63
-
Ser
GCT
[ENA]
¡û
>WENV180796191
ODJB01001883
[ODJB] human metagenome; G_DNA_Supragingival plaque
4099
4012
-
Ser
GCT
[ENA]
¡û
>WENV180808998
ODJK01002757
[ODJK] human metagenome; G_DNA_Subgingival plaque
6791
6878
+
Ser
GCT
[ENA]
¡û
>WENV180846782
ODKT01023248
[ODKT] human metagenome; G_DNA_Supragingival plaque
577
490
-
Ser
GCT
[ENA]
¡û
>WENV180875323
ODLQ01093357
[ODLQ] human metagenome; G_DNA_Tongue dorsum
127
214
+
Ser
GCT
[ENA]
¡û
>WENV180950532
ODUH01000083
[ODUH] human metagenome; G_DNA_Subgingival plaque
33266
33179
-
Ser
GCT
[ENA]
¡û
>WENV180974878
ODUY01000157
[ODUY] human metagenome; G_DNA_Supragingival plaque
21690
21777
+
Ser
GCT
[ENA]
¡û
>WENV180979073
ODVC01000003
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
279301
279388
+
Ser
GCT
[ENA]
¡û
>WENV181067244
ODZI01010054
[ODZI] human metagenome; G_DNA_Supragingival plaque
164
77
-
Ser
GCT
[ENA]
¡û
>WENV181081833
OEAS01413044
[OEAS] human metagenome; G_DNA_Supragingival plaque
111
24
-
Ser
GCT
[ENA]
¡û
>WENV181084376
OEAV01175208
[OEAV] human metagenome; G_DNA_Supragingival plaque
196
282
+
Ser
GCT
[ENA]
¡û
>WENV181120252
OEFJ01013982
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
617
530
-
Ser
GCT
[ENA]
¡û
>W141135688
AWET01000007
Bacteroidota
Hoylesella pleuritidis F0068 [AWET]
115278
115191
-
Ser
GCT
[ENA]
¡û
>WENV181466232
OGEQ01002943
[OGEQ] metagenome; Human gut stool
169
82
-
Ser
GCT
[ENA]
¡û
>WENV181550455
OGIM01004554
[OGIM] metagenome; Human gut stool
1910
1997
+
Ser
GCT
[ENA]
¡û
>WENV181560128
OGJB01004977
[OGJB] metagenome; Human gut stool
275
188
-
Ser
GCT
[ENA]
¡û
>WENV181576077
OGJV01000374
[OGJV] metagenome; Human gut stool
23403
23316
-
Ser
GCT
[ENA]
¡û
>W141204124
AZJG01000002
Bacteroidota
Hoylesella oralis CC98A [AZJG]
241989
241900
-
Ser
GCT
[ENA]
¡û
>W141225037
BAIX01000017
Bacteroidota
Hoylesella enoeca JCM 12259 [BAIX]
24020
23931
-
Ser
GCT
[ENA]
¡û
>W141225773
BAJN01000003
Bacteroidota
Hoylesella pleuritidis JCM 14110 [BAJN]
120925
121012
+
Ser
GCT
[ENA]
¡û
>W141276448
JADU01000027
Bacteroidota
Hallella seregens ATCC 51272 [JADU]
12962
12873
-
Ser
GCT
[ENA]
¡û
>WENV183403016
OLZV01010974
[OLZV] human gut metagenome; feces
1124
1211
+
Ser
GCT
[ENA]
¡û
>WENV183453275
OMDD01017048
[OMDD] human gut metagenome; feces
817
730
-
Ser
GCT
[ENA]
¡û
>WENV183643721
OQVP01000015
[OQVP] human gut metagenome; human gut
16901
16988
+
Ser
GCT
[ENA]
¡û
>WENV183645442
OQVQ01007210
[OQVQ] human gut metagenome; human gut
111
23
-
Ser
GCT
[ENA]
¡û
>WENV183651154
OQVT01084117
[OQVT] human gut metagenome; human gut
618
705
+
Ser
GCT
[ENA]
¡û
>WENV170658655
JTFP01173904
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
155
244
+
Ser
GCT
[ENA]
¡û
>WENV170669708
LAHS01001462
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
9314
9401
+
Ser
GCT
[ENA]
¡û
>WENV170718998
LSQX01098423
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
31688
31775
+
Ser
GCT
[ENA]
¡û
>WENV170777746
LXOW01318535
[LXOW] bovine gut metagenome; Cow rumen
205
292
+
Ser
GCT
[ENA]
¡û
>WENV170778743
LXOW01431014
[LXOW] bovine gut metagenome; Cow rumen
3011
3100
+
Ser
GCT
[ENA]
¡û
>WENV170969560
MTKW01032545
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2785
2872
+
Ser
GCT
[ENA]
¡û
>W141560053
JHXG01000010
Bacteroidota
Xylanibacter brevis P6B11 [JHXG]
31045
31132
+
Ser
GCT
[ENA]
¡û
>W1911154175
NPIZ01000068
Bacteroidota
Prevotella sp. P5-126 [NPIZ]
16943
17030
+
Ser
GCT
[ENA]
¡û
>W1911154217
NPJA01000035
Bacteroidota
Prevotella sp. P5-50 [NPJA]
36387
36300
-
Ser
GCT
[ENA]
¡û
>W1911154236
NPJB01000055
Bacteroidota
Prevotella sp. P4-119 [NPJB]
28053
27966
-
Ser
GCT
[ENA]
¡û
>W1911154309
NPJC01000075
Bacteroidota
Prevotella sp. P4-98 [NPJC]
30464
30377
-
Ser
GCT
[ENA]
¡û
>W1911154323
NPJD01000013
Bacteroidota
Prevotella sp. P3-120 [NPJD]
33137
33050
-
Ser
GCT
[ENA]
¡û
>W1911154359
NPJE01000004
Bacteroidota
Prevotella sp. P3-92 [NPJE]
24963
25050
+
Ser
GCT
[ENA]
¡û
>W1911533779
OKQZ01000004
Bacteroidota
Prevotella sp. Marseille-P4119 [OKQZ]
144779
144866
+
Ser
GCT
[ENA]
¡û
>W1810192614
PKMK01000012
Bacteroidota
Dysgonamonadaceae bacterium XHS2771 [PKMK]
7063
7150
+
Ser
GCT
[ENA]
¡û
>W1810577071
QENY01000024
Bacteroidota
Hallella colorans DSM 100333 [QENY]
22234
22321
+
Ser
GCT
[ENA]
¡û
>W1810819938
QSEI01000001
Bacteroidota
Phocaeicola plebeius AM49-7BH [QSEI]
181497
181584
+
Ser
GCT
[ENA]
¡û
>W1810819940
QSEI01000001
Bacteroidota
Phocaeicola plebeius AM49-7BH [QSEI]
181690
181777
+
Ser
GCT
[ENA]
¡û
>W1810839397
QSTW01000014
Bacteroidota
Phocaeicola plebeius OM06-2 [QSTW]
30883
30796
-
Ser
GCT
[ENA]
¡û
>W1810839399
QSTW01000014
Bacteroidota
Phocaeicola plebeius OM06-2 [QSTW]
30690
30603
-
Ser
GCT
[ENA]
¡û
>C151004237
CP003369
Bacteroidota
Prevotella dentalis DSM 3688 [CP003368, CP003369]
220767
220856
+
Ser
GCT
[Ensembl]
¡û
>W2010269946
CABKSK020000001
Bacteroidota
Prevotella oralis [CABKSK]
520483
520396
-
Ser
GCT
[ENA]
¡û
>W2010606199
JABKKE010000012
Bacteroidota
Prevotella sp. PROD [JABKKE]
59167
59254
+
Ser
GCT
[ENA]
¡û
>W2010606258
JABKKF010000014
Bacteroidota
Prevotella sp. PMUR [JABKKF]
2345
2258
-
Ser
GCT
[ENA]
¡û
>W2010606412
JABKKI010000019
Bacteroidota
Prevotella sp. PCJ2 [JABKKI]
3207
3294
+
Ser
GCT
[ENA]
¡û
>W2011024040
NPIZ01000068
Bacteroidota
Prevotella sp. P5-126 [NPIZ]
16943
17030
+
Ser
GCT
[ENA]
¡û
>W2011024082
NPJA01000035
Bacteroidota
Prevotella sp. P5-50 [NPJA]
36387
36300
-
Ser
GCT
[ENA]
¡û
>W2011024101
NPJB01000055
Bacteroidota
Prevotella sp. P4-119 [NPJB]
28053
27966
-
Ser
GCT
[ENA]
¡û
>W2011024174
NPJC01000075
Bacteroidota
Prevotella sp. P4-98 [NPJC]
30464
30377
-
Ser
GCT
[ENA]
¡û
>W2011024188
NPJD01000013
Bacteroidota
Prevotella sp. P3-120 [NPJD]
33137
33050
-
Ser
GCT
[ENA]
¡û
>W2011024224
NPJE01000004
Bacteroidota
Prevotella sp. P3-92 [NPJE]
24963
25050
+
Ser
GCT
[ENA]
¡û
>ENV09002857
ADGC01035955
Wallaby gut metagenome MeugComb_C1
176
87
-
Ser
GCT
[ENA]
¡û
>W2110606764
JAHKBE010000039
Bacteroidota
Hallella sp. CLA-AA-H145 [JAHKBE]
26536
26449
-
Ser
GCT
[ENA]
¡û
>C211069224
CP047159
Bacteroidota
Prevotella sp. Rep29 [CP047159]
867144
867057
-
Ser
GCT
-
¡û
>C231306006
CP091787
Bacteroidota
Prevotella sp. E13-17 [CP091787]
2173944
2174031
+
Ser
GCT
-
¡û
>C231306054
CP091788
Bacteroidota
Prevotella sp. E2-28 [CP091788]
2233415
2233502
+
Ser
GCT
-
¡û
>C231306110
CP091790
Bacteroidota
Prevotella sp. E13-3 [CP091790]
2301239
2301326
+
Ser
GCT
-
¡û
>C231306160
CP091791
Bacteroidota
Prevotella sp. E2-25 [CP091791]
2201388
2201475
+
Ser
GCT
-
¡û
>C231306211
CP091792
Bacteroidota
Prevotella sp. E1-9 [CP091792]
2322983
2323070
+
Ser
GCT
-
¡û
>C231306263
CP091793
Bacteroidota
Prevotella sp. E1-a [CP091793]
2322958
2323045
+
Ser
GCT
-
¡û
>C231306337
CP091794
Bacteroidota
Prevotella sp. E15-14 [CP091794]
1315079
1314992
-
Ser
GCT
-
¡û
>C231368369
CP096247
Bacteroidota
Prevotella sp. E15-22 [CP096247]
1437089
1437002
-
Ser
GCT
-
¡û
>W1511351265
JRNC01000031
Bacteroidota
Prevotella sp. S7-1-8 [JRNC]
16217
16304
+
Ser
GCT
[ENA]
¡û
>W11142602
AEPE02000006
Bacteroidota
Hoylesella oralis ATCC 33269 [AEPE]
96864
96953
+
Ser
GCT
[ENA]
¡û
>W11170818
AFPW01000027
Bacteroidota
Prevotella dentalis DSM 3688 [AFPW]
29357
29446
+
Ser
GCT
[ENA]
¡û
>C161052760
CP013195
Bacteroidota
Hoylesella enoeca F0113 [CP013195]
565281
565192
-
Ser
GCT
[Ensembl]
¡û
>W121017389
AGRS01000063
Bacteroidota
Prevotella dentalis DSM 3688 [AGRS]
155330
155419
+
Ser
GCT
[ENA]
¡û
>W1610419615
FIZG01000010
Bacteroidota
Prevotella phocaeensis SN19 [FIZG]
134352
134441
+
Ser
GCT
[ENA]
¡û
>W1610906903
LSCT01000120
Bacteroidota
Bacteroidales bacterium KA00344 [LSCT]
106643
106732
+
Ser
GCT
[ENA]
¡û
>W1710419351
FIZG01000010
Bacteroidota
Prevotella phocaeensis SN19 [FIZG]
134352
134441
+
Ser
GCT
[ENA]
¡û
>W1710516554
FNCQ01000008
Bacteroidota
Prevotella communis BP1-148 [FNCQ]
72699
72612
-
Ser
GCT
[ENA]
¡û
>W1710524629
FNIW01000011
Bacteroidota
Prevotella communis BP1-145 [FNIW]
60642
60729
+
Ser
GCT
[ENA]
¡û
>W1710584651
FQVS01000002
Bacteroidota
Hoylesella oralis [FQVS]
338465
338376
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK