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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.264987 (49 seq.)
>W131231547
AUIM01000015
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
16369
16294
-
Trp
CCA
[ENA]
¡û
>W131045840
AMRV01000003
Alphaproteobacteria
Pacificimonas flava JLT2015 [AMRV]
372466
372391
-
Trp
CCA
[ENA]
¡û
>W1712056297
NFZT01000001
Alphaproteobacteria
Pacificimonas flava [NFZT]
626959
626884
-
Trp
CCA
[ENA]
¡û
>WENV182541720
OJAU01000680
[OJAU] seawater metagenome; Sea water
2958
2883
-
Trp
CCA
[ENA]
¡û
>WENV182545973
OJBO01000221
[OJBO] seawater metagenome; Sea water
19673
19598
-
Trp
CCA
[ENA]
¡û
>WENV182549731
OJBY01018984
[OJBY] seawater metagenome; Sea water
274
349
+
Trp
CCA
[ENA]
¡û
>WENV182563973
OJED01009216
[OJED] seawater metagenome; Sea water
859
784
-
Trp
CCA
[ENA]
¡û
>WENV183750524
PPFU01316349
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1142
1217
+
Trp
CCA
[ENA]
¡û
>WENV170009754
APMI01002542
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2466
2391
-
Trp
CCA
[ENA]
¡û
>WENV170012985
ASRQ01001572
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
809
734
-
Trp
CCA
[ENA]
¡û
>WENV170013052
ASRR01001030
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
1466
1541
+
Trp
CCA
[ENA]
¡û
>WENV170551089
CXWJ01000053
[CXWJ] wastewater metagenome; activated sludge
15236
15161
-
Trp
CCA
[ENA]
¡û
>WENV170557242
CXWL01021910
[CXWL] groundwater metagenome; biofilm material
2437
2512
+
Trp
CCA
[ENA]
¡û
>WENV170891471
MDTD01024445
[MDTD] marine metagenome; seawater
528
603
+
Trp
CCA
[ENA]
¡û
>WENV170932086
MDTG01196550
[MDTG] marine metagenome; seawater
259
334
+
Trp
CCA
[ENA]
¡û
>W1911493246
OBEL01000001
Alphaproteobacteria
Cohaesibacter gelatinilyticus DSM 18289 [OBEL]
1799847
1799772
-
Trp
CCA
[ENA]
¡û
>W1911498253
OCTN01000005
Alphaproteobacteria
Monaibacterium marinum C7 [OCTN]
58952
58877
-
Trp
CCA
[ENA]
¡û
>W1911701555
QNUM01000003
Alphaproteobacteria
Cohaesibacter haloalkalitolerans JC131 [QNUM]
600765
600690
-
Trp
CCA
[ENA]
¡û
>W1810158071
PJCH01000017
Alphaproteobacteria
Marinicaulis flavus SY-3-19 [PJCH]
57068
56993
-
Trp
CCA
[ENA]
¡û
>W2010700674
JACHGC010000001
Alphaproteobacteria
Pacificimonas flava DSM 107612 [JACHGC]
95081
95156
+
Trp
CCA
[ENA]
¡û
>W2010731496
JACIJC010000002
Alphaproteobacteria
Sphingobium boeckii DSM 25079 [JACIJC]
594845
594920
+
Trp
CCA
[ENA]
¡û
>W2011154197
OBEL01000001
Alphaproteobacteria
Cohaesibacter gelatinilyticus DSM 18289 [OBEL]
1799847
1799772
-
Trp
CCA
[ENA]
¡û
>W2011159157
OCTN01000005
Alphaproteobacteria
Monaibacterium marinum C7 [OCTN]
58952
58877
-
Trp
CCA
[ENA]
¡û
>W2011278095
QNUM01000003
Alphaproteobacteria
Cohaesibacter haloalkalitolerans JC131 [QNUM]
600765
600690
-
Trp
CCA
[ENA]
¡û
>W2011490417
RSEL01000014
Alphaproteobacteria
Altererythrobacter rigui KCTC 42620 [RSEL]
93154
93079
-
Trp
CCA
[ENA]
¡û
>W2011512665
RZMX01000013
Alphaproteobacteria
Pelagibacterium montanilacus CCL18 [RZMX]
1737
1812
+
Trp
CCA
[ENA]
¡û
>W2011513125
RZNJ01000002
Alphaproteobacteria
Arsenicitalea aurantiaca 42-50 [RZNJ]
698299
698224
-
Trp
CCA
[ENA]
¡û
>W2011617095
SKCJ01000001
Alphaproteobacteria
Altererythrobacter lutipelagi GH1-16 [SKCJ]
768665
768590
-
Trp
CCA
[ENA]
¡û
>W2011961915
VANT01000001
Alphaproteobacteria
Cohaesibacter sp. CAU 1516 [VANT]
799224
799299
+
Trp
CCA
[ENA]
¡û
>ENV09000614
ABSP01002647
Freshwater sediment metagenome lwMethane_C1
581
506
-
Trp
CCA
[ENA]
¡û
>W2110029018
BMKL01000001
Alphaproteobacteria
Altererythrobacter deserti CGMCC 1.15959 [BMKL]
2184883
2184808
-
Trp
CCA
[ENA]
¡û
>W2110050138
BMZE01000001
Alphaproteobacteria
Devosia pacifica KCTC 32437 [BMZE]
470597
470522
-
Trp
CCA
[ENA]
¡û
>W2110569054
JAGSGB010000001
Alphaproteobacteria
Pacificimonas aurantium DSM 107782 [JAGSGB]
835717
835792
+
Trp
CCA
[ENA]
¡û
>W2110570372
JAGSPA010000001
Alphaproteobacteria
Pacificimonas sp. WHA3 [JAGSPA]
579353
579278
-
Trp
CCA
[ENA]
¡û
>W2110658742
JAHWUS010000003
Alphaproteobacteria
Caulobacteraceae bacterium SZ9 [JAHWUS]
273543
273618
+
Trp
CCA
[ENA]
¡û
>C201220968
CP049056
Alphaproteobacteria
Rhodobacteraceae bacterium RR4-56 [CP049056]
3520474
3520549
+
Trp
CCA
-
¡û
>C201258565
CP053086
Alphaproteobacteria
Pelagibacterium halotolerans ANSP101 [CP053086]
1730304
1730379
+
Trp
CCA
-
¡û
>C211024533
AP024629
Alphaproteobacteria
Alphaproteobacteria bacterium SO-S41 [AP024629]
2094295
2094370
+
Trp
CCA
-
¡û
>C211117398
CP058669
Alphaproteobacteria
Hyphobacterium sp. CCMP332 [CP058669]
1263653
1263578
-
Trp
CCA
-
¡û
>W2110706422
JAIVMF010000035
Alphaproteobacteria
Stappia stellulata SN27-3 [JAIVMF]
300
375
+
Trp
CCA
[ENA]
¡û
>C231518499
CP107716
Alphaproteobacteria
Pelagibacterium sp. YIM 151497 [CP107716]
1854236
1854311
+
Trp
CCA
-
¡û
>W1511568630
LAJF01000137
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
54245
54320
+
Trp
CCA
[ENA]
¡û
>C121005257
CP003075
Alphaproteobacteria
Pelagibacterium halotolerans B2 [CP003075]
1679374
1679299
-
Trp
CCA
[Ensembl]
¡û
>WENV058966
AACY023349160
Marine microbial communities from Global Ocean Sampling (GOS)
882
805
-
Trp
CCA
[ENA]
>W1710516682
FNCS01000032
Alphaproteobacteria
Pelagibacterium luteolum [FNCS]
218
293
+
Trp
CCA
[ENA]
¡û
>W1710528174
FNMZ01000006
Alphaproteobacteria
Albimonas donghaensis [FNMZ]
16446
16371
-
Trp
CCA
[ENA]
¡û
>W1710533660
FNRH01000002
Alphaproteobacteria
Pelagibacterium halotolerans H642 [FNRH]
335652
335577
-
Trp
CCA
[ENA]
¡û
>W1710571172
FOVR01000027
Alphaproteobacteria
Cohaesibacter marisflavi [FOVR]
16421
16346
-
Trp
CCA
[ENA]
¡û
>W1710583797
FQVC01000002
Alphaproteobacteria
Devosia limi DSM 17137 [FQVC]
144473
144548
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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