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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267445 (59 seq.)
>W1710809790
LKEV01000001
Actinomycetota
Corynebacterium lowii [LKEV]
415169
415242
+
Thr
GGT
[ENA]
¡û
>W1710821341
LKST01000002
Actinomycetota
Corynebacterium oculi [LKST]
329109
329036
-
Thr
GGT
[ENA]
¡û
>W131159176
AQUV01000002
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
351927
352000
+
Thr
GGT
[ENA]
¡û
>W1711107342
LTSS01000009
Actinomycetota
Corynebacterium sp. HMSC073D01 [LTSS]
33647
33720
+
Thr
GGT
[ENA]
¡û
>W1711185906
LWNU01000007
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
221687
221760
+
Thr
GGT
[ENA]
¡û
>W1711186891
LWOP01000016
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
22408
22335
-
Thr
GGT
[ENA]
¡û
>W1711186989
LWOR01000099
Actinomycetota
Corynebacterium sp. HMSC29G08 [LWOR]
20220
20293
+
Thr
GGT
[ENA]
¡û
>W1711510284
MLAL01000045
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
205116
205043
-
Thr
GGT
[ENA]
¡û
>W1711511727
MLCR01000006
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
226526
226453
-
Thr
GGT
[ENA]
¡û
>C171064736
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
1982562
1982489
-
Thr
GGT
-
¡û
>C005529
BA000035
Actinomycetota
Corynebacterium efficiens YS-314 [BA000035]
522152
522227
+
Thr
GGT
[Ensembl]
¡û
>WENV180096565
MTBK01135905
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
2947
2872
-
Thr
GGT
[ENA]
¢þ
>W141008926
AHAE01000074
Actinomycetota
Corynebacterium otitidis ATCC 51513 [AHAE]
49735
49662
-
Thr
GGT
[ENA]
¡û
>WENV180258013
OBEQ010964149
[OBEQ] groundwater metagenome; groundwater
142
69
-
Thr
GGT
[ENA]
¢þ
>WENV181169000
OEIV010000100
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
54012
54085
+
Thr
GGT
[ENA]
¢þ
>WENV181411420
OGCI01024923
[OGCI] hot springs metagenome; Hot spring water
59
132
+
Thr
GGT
[ENA]
¢þ
>W141243560
CAJP01000019
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
18638
18711
+
Thr
GGT
[ENA]
¡û
>W141243974
CAJZ01000209
Actinomycetota
Corynebacterium otitidis ATCC 51513 [CAJZ]
10562
10635
+
Thr
GGT
[ENA]
¡û
>WENV182643967
OJLW01003974
[OJLW] metagenome; surface
2865
2938
+
Thr
GGT
[ENA]
¢þ
>WENV183667664
ORJL010670916
[ORJL] groundwater metagenome; groundwater
118
45
-
Thr
GGT
[ENA]
¢þ
>WENV183687325
ORMF011130216
[ORMF] groundwater metagenome; groundwater
123
50
-
Thr
GGT
[ENA]
¢þ
>WENV183749237
PPFU01140118
[PPFU] hypolithon metagenome; Antarctic Hypolithon
773
846
+
Thr
GGT
[ENA]
¢þ
>WENV183750222
PPFU01273705
[PPFU] hypolithon metagenome; Antarctic Hypolithon
5049
4975
-
Thr
GGT
[ENA]
¢þ
>WENV170553109
CXWK01007999
[CXWK] wastewater metagenome; activated sludge
14707
14780
+
Thr
GGT
[ENA]
¢þ
>WENV170684838
LFRM01060739
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
740
667
-
Thr
GGT
[ENA]
¢þ
>WENV170687173
LFRM01180864
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1099
1172
+
Thr
GGT
[ENA]
¢þ
>WENV170721821
LSQX01204678
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9747
9820
+
Thr
GGT
[ENA]
¢þ
>WENV170724174
LSQX01296129
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
10807
10880
+
Thr
GGT
[ENA]
¢þ
>WENV170970846
MTKX01000145
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4680
4753
+
Thr
GGT
[ENA]
¢þ
>WENV170975994
MTKZ01003698
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
906
833
-
Thr
GGT
[ENA]
¢þ
>C181039017
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
321192
321265
+
Thr
GGT
-
¡û
>W09113382
ABYP01000003
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51867 [ABYP]
42367
42294
-
Thr
GGT
[ENA]
¡û
>C181211253
LS483404
Actinomycetota
Corynebacterium renale NCTC11140 [LS483404]
776514
776587
+
Thr
GGT
-
¡û
>C181215110
LS483464
Actinomycetota
Corynebacterium renale NCTC7448 [LS483464]
1250294
1250367
+
Thr
GGT
-
¡û
>W09123827
ACHF01000027
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51866 [ACHF]
158
231
+
Thr
GGT
[ENA]
¡û
>W09127928
ACLI01000125
Actinomycetota
Corynebacterium efficiens YS-314 [ACLI]
17521
17446
-
Thr
GGT
[ENA]
¡û
>W141563945
JIAJ01000002
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
379323
379396
+
Thr
GGT
[ENA]
¡û
>W1910225856
FMSX01000019
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
95060
95133
+
Thr
GGT
[ENA]
¡û
>W1911551204
OVSI01000006
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
61396
61323
-
Thr
GGT
[ENA]
¡û
>W1810058162
PDJF01000001
Actinomycetota
Corynebacterium renale DSM 20688 [PDJF]
338454
338381
-
Thr
GGT
[ENA]
¡û
>W1810155060
PJAF01000031
Actinomycetota
Corynebacterium mastitidis 16-1433 [PJAF]
7988
7915
-
Thr
GGT
[ENA]
¡û
>W1810187340
PKHN01000001
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
280719
280792
+
Thr
GGT
[ENA]
¡û
>C151007255
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
336623
336696
+
Thr
GGT
[Ensembl]
¡û
>C151034697
CP007790
Actinomycetota
Corynebacterium marinum DSM 44953 [CP007790]
352277
352350
+
Thr
GGT
[Ensembl]
¡û
>C151045667
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
518566
518639
+
Thr
GGT
-
¡û
>C151045668
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
518894
518967
+
Thr
GGT
-
¡û
>W10124083
AEAU01000081
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
12109
12034
-
Thr
GGT
[ENA]
¡û
>C11106705
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
392497
392422
-
Thr
GGT
[Ensembl]
¡û
>W11130920
AEAU01000081
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
12109
12034
-
Thr
GGT
[ENA]
¡û
>W1511595744
LBNF01000013
Actinomycetota
Corynebacterium otitidis TD1 [LBNF]
25036
24963
-
Thr
GGT
[ENA]
¡û
>W1511644885
LDYE01000006
Actinomycetota
Corynebacterium renale CIP 52.96 [LDYE]
81345
81272
-
Thr
GGT
[ENA]
¡û
>C161041060
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
1710260
1710187
-
Thr
GGT
[Ensembl]
¡û
>W1610069822
BCSU01000011
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
72102
72175
+
Thr
GGT
[ENA]
¡û
>C131005379
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
505770
505843
+
Thr
GGT
[Ensembl]
¡û
>W1610673845
LKEV01000001
Actinomycetota
Corynebacterium lowii [LKEV]
415169
415242
+
Thr
GGT
[ENA]
¡û
>W1610685303
LKST01000002
Actinomycetota
Corynebacterium oculi [LKST]
329109
329036
-
Thr
GGT
[ENA]
¡û
>W1710067195
BCSU01000011
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
72102
72175
+
Thr
GGT
[ENA]
¡û
>W1710605225
FWWS01000035
Actinomycetota
Corynebacterium glucuronolyticum [FWWS]
33964
34037
+
Thr
GGT
[ENA]
¡û
>W1710608194
FXAR01000011
Actinomycetota
Corynebacterium pollutisoli [FXAR]
39388
39461
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK