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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270881 (39 seq.)
>W1710867334
LMIE01000029
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
344172
344097
-
Thr
TGT
[ENA]
¡û
>W1711167245
LVWD01000026
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
388156
388231
+
Thr
TGT
[ENA]
¡û
>W1711343225
MCIC01000017
Betaproteobacteria
Hydrogenophaga sp. H7 [MCIC]
334301
334376
+
Thr
TGT
[ENA]
¡û
>W1711394858
MERT01000019
Betaproteobacteria
Burkholderiales bacterium GWF1_66_17 [MERT]
163978
164053
+
Thr
TGT
[ENA]
¡û
>W1711751700
MUNZ01000039
Betaproteobacteria
Hydrogenophaga sp. A37 [MUNZ]
8505
8580
+
Thr
TGT
[ENA]
¡û
>W1712049952
NFUU01000001
Betaproteobacteria
Hydrogenophaga sp. IBVHS1 [NFUU]
489345
489420
+
Thr
TGT
[ENA]
¡û
>C171049791
CP016449
Betaproteobacteria
Hydrogenophaga sp. RAC07 [CP016449]
3228237
3228162
-
Thr
TGT
-
¡û
>C171060596
CP017311
Betaproteobacteria
Hydrogenophaga sp. PBC [CP017311]
477474
477549
+
Thr
TGT
-
¡û
>C171063188
CP017476
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [CP017476]
1021828
1021903
+
Thr
TGT
-
¡û
>WENV180354809
OBNE01021385
[OBNE] groundwater metagenome; groundwater
2243
2318
+
Thr
TGT
[ENA]
¢þ
>WENV180355305
OBNH01000517
[OBNH] sediment metagenome; sediment
112
37
-
Thr
TGT
[ENA]
¢þ
>WENV180355576
OBNI01002793
[OBNI] sediment metagenome; sediment
97
22
-
Thr
TGT
[ENA]
¢þ
>WENV180391140
OBPM01018164
[OBPM] marine metagenome; ENVO:00002010
493
418
-
Thr
TGT
[ENA]
¢þ
>WENV181368042
OFQG01000095
[OFQG] freshwater metagenome; Freshwater Lake
1524
1449
-
Thr
TGT
[ENA]
¢þ
>W141214273
AZSO01000007
Betaproteobacteria
Hydrogenophaga sp. T4 [AZSO]
15008
14933
-
Thr
TGT
[ENA]
¡û
>W141260605
CCAE010000002
Betaproteobacteria
Hydrogenophaga intermedia [CCAE]
132765
132840
+
Thr
TGT
[ENA]
¡û
>WENV183746377
POVV01035620
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
466
391
-
Thr
TGT
[ENA]
¢þ
>WENV170018761
BBPD01000752
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
4009
4084
+
Thr
TGT
[ENA]
¢þ
>WENV170020095
BBPE01002888
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
18115
18040
-
Thr
TGT
[ENA]
¢þ
>WENV170646043
JQGF01014433
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
219
144
-
Thr
TGT
[ENA]
¢þ
>C191154111
CP037867
Betaproteobacteria
Hydrogenophaga pseudoflava DSM 1084 [CP037867]
4095538
4095463
-
Thr
TGT
-
¡û
>C191163901
CP039252
Betaproteobacteria
Hydrogenophaga sp. PAMC20947 [CP039252]
2687831
2687756
-
Thr
TGT
-
¡û
>W1910211113
FMBP01000011
Betaproteobacteria
Thiomonas sp. X19 [FMBP]
307821
307746
-
Thr
TGT
[ENA]
¡û
>W1910699832
MERX01000337
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_66_10 [MERX]
1886
1961
+
Thr
TGT
[ENA]
¡û
>W1910700134
MESF01000174
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_66_35 [MESF]
5088
5163
+
Thr
TGT
[ENA]
¡û
>W1910700146
MESG01000023
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_67_64 [MESG]
14926
14851
-
Thr
TGT
[ENA]
¡û
>W1910700196
MESH01000181
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_67_14 [MESH]
25650
25725
+
Thr
TGT
[ENA]
¡û
>W1910700422
MESM01001431
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_67_210 [MESM]
2658
2733
+
Thr
TGT
[ENA]
¡û
>W121070113
AJWL01000053
Betaproteobacteria
Hydrogenophaga sp. PBC [AJWL]
62330
62405
+
Thr
TGT
[ENA]
¡û
>W1610070381
BCTF01000009
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
45127
45052
-
Thr
TGT
[ENA]
¡û
>W1610070517
BCTI01000001
Betaproteobacteria
Hydrogenophaga intermedia NBRC 102510 [BCTI]
145975
145900
-
Thr
TGT
[ENA]
¡û
>W1610074395
BCWQ01000004
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
114250
114325
+
Thr
TGT
[ENA]
¡û
>W1610074447
BCWR01000018
Betaproteobacteria
Hydrogenophaga taeniospiralis NBRC 102512 [BCWR]
29806
29731
-
Thr
TGT
[ENA]
¡û
>W1610729680
LMIE01000029
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
344172
344097
-
Thr
TGT
[ENA]
¡û
>W1610977576
LVWD01000026
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
388156
388231
+
Thr
TGT
[ENA]
¡û
>W1710067754
BCTF01000009
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
45127
45052
-
Thr
TGT
[ENA]
¡û
>W1710067890
BCTI01000001
Betaproteobacteria
Hydrogenophaga intermedia NBRC 102510 [BCTI]
145975
145900
-
Thr
TGT
[ENA]
¡û
>W1710071513
BCWQ01000004
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
114250
114325
+
Thr
TGT
[ENA]
¡û
>W1710071565
BCWR01000018
Betaproteobacteria
Hydrogenophaga taeniospiralis NBRC 102512 [BCWR]
29806
29731
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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