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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276971 (4 seq.)
>A179000003
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
21317
21439
+
Pro
GGG
-
¡û
>A179000098
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
486709
486831
+
Pro
GGG
-
¡û
>A179000739
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
437307
437430
+
Pro
GGG
-
¡û
>At1647
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
21281
21403
+
Pro
GGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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