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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278164 (112 seq.)
>W1710853003
LLWF02000031
Alphaproteobacteria
Roseomonas mucosa [LLWF]
31776
31704
-
Met
CAT
[ENA]
¡û
>W1710870188
LMKH01000037
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
145093
145168
+
Met
CAT
[ENA]
¡û
>W1710870483
LMKN01000009
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
490638
490713
+
Met
CAT
[ENA]
¡û
>W1710870890
LMKW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
445070
444995
-
Met
CAT
[ENA]
¡û
>W1710870913
LMKX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
88321
88396
+
Met
CAT
[ENA]
¡û
>W1710871193
LMLC01000004
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
520713
520638
-
Met
CAT
[ENA]
¡û
>W1710871208
LMLD01000008
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
131019
131094
+
Met
CAT
[ENA]
¡û
>W1710872316
LMLW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
222821
222746
-
Met
CAT
[ENA]
¡û
>W1710877213
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
158254
158329
+
Met
CAT
[ENA]
¡û
>W1710879486
LMRS01000012
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
34387
34312
-
Met
CAT
[ENA]
¡û
>W1711421947
MIAI01000052
Alphaproteobacteria
Sphingomonadales bacterium GWF1_63_6 [MIAI]
7292
7217
-
Met
CAT
[ENA]
¡û
>C171039561
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
2982854
2982782
-
Met
CAT
-
¡û
>C171049905
CP016456
Alphaproteobacteria
Sphingobium sp. RAC03 [CP016456]
127499
127424
-
Met
CAT
-
¡û
>W141276647
JADY01000011
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
35615
35687
+
Met
CAT
[ENA]
¡û
>W141426714
JEMV01000002
Alphaproteobacteria
Sphingobium sp. Ant17 [JEMV]
211088
211013
-
Met
CAT
[ENA]
¡û
>WENV170577565
FSSH01000205
[FSSH] freshwater metagenome; drinking water
72519
72444
-
Met
CAT
[ENA]
¡û
>C181102035
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
4017271
4017343
+
Met
CAT
-
¡û
>C191163767
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
1997298
1997223
-
Met
CAT
-
¡û
>W141558721
JHWD01000007
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
218637
218565
-
Met
CAT
[ENA]
¡û
>W141779206
JONP01000014
Alphaproteobacteria
Roseomonas aerilata DSM 19363 [JONP]
42205
42281
+
Met
CAT
[ENA]
¡û
>W141801017
JPDP01000077
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
1510
1585
+
Met
CAT
[ENA]
¡û
>W141805162
JPJC01000046
Alphaproteobacteria
Sphingomonas sp. FUKUSWIS1 [JPJC]
8647
8572
-
Met
CAT
[ENA]
¡û
>W141808013
JPPQ01000002
Alphaproteobacteria
Sphingobium sp. ba1 [JPPQ]
474
399
-
Met
CAT
[ENA]
¡û
>W1910182464
BJMX01000005
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
62113
62038
-
Met
CAT
[ENA]
¡û
>W1910744287
MIAK01000010
Alphaproteobacteria
Sphingomonadales bacterium RIFCSPLOWO2_12_FULL_63_15 [MIAK]
37298
37373
+
Met
CAT
[ENA]
¡û
>W1911075000
NMUA01000005
Alphaproteobacteria
Sphingobium sp. D43FB [NMUA]
198513
198588
+
Met
CAT
[ENA]
¡û
>W1810463432
PZZN01000003
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
672213
672288
+
Met
CAT
[ENA]
¡û
>W1810476722
QAOF01000006
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
158600
158675
+
Met
CAT
[ENA]
¡û
>W1810476773
QAOG01000004
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
469432
469357
-
Met
CAT
[ENA]
¡û
>W1810486905
QAYE01000008
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
144764
144839
+
Met
CAT
[ENA]
¡û
>PL201000252
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 plasmid: [CP015583]
2982854
2982782
-
Ile2
CAT
[ENA]
¡û
>SRA1014153
SRR023845.20973
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
158
233
+
Met
CAT
[SRA]
>SRA1014322
SRR023845.88140
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
147
72
-
Met
CAT
[SRA]
>SRA1014369
SRR023845.109230
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
188
263
+
Met
CAT
[SRA]
>SRA1014504
SRR023845.169494
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
46
121
+
Met
CAT
[SRA]
>SRA1014572
SRR023845.206696
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
211
136
-
Met
CAT
[SRA]
>SRA1014611
SRR023845.226411
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
126
51
-
Met
CAT
[SRA]
>SRA1014686
SRR023845.263536
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
171
246
+
Met
CAT
[SRA]
>SRA1014748
SRR023845.298435
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
95
20
-
Met
CAT
[SRA]
>SRA1014837
SRR023845.337791
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
191
266
+
Met
CAT
[SRA]
>SRA1014884
SRR023845.363261
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
126
51
-
Met
CAT
[SRA]
>SRA1015017
SRR023845.424501
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
144
69
-
Met
CAT
[SRA]
>SRA1015157
SRR023845.481450
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
114
39
-
Met
CAT
[SRA]
>SRA1015425
SRR023846.52059
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
170
95
-
Met
CAT
[SRA]
>SRA1015529
SRR023846.99430
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
32
107
+
Met
CAT
[SRA]
>SRA1015604
SRR023846.130304
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
35
110
+
Met
CAT
[SRA]
>SRA1015646
SRR023846.144431
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
155
230
+
Met
CAT
[SRA]
>SRA1015705
SRR023846.165915
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
214
139
-
Met
CAT
[SRA]
>SRA1015710
SRR023846.166568
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
122
47
-
Met
CAT
[SRA]
>SRA1016387
SRR023846.476083
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
211
136
-
Met
CAT
[SRA]
>SRA1016447
SRR023846.502064
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
9
84
+
Met
CAT
[SRA]
>W2010096079
BJMX01000005
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
62113
62038
-
Ile2
CAT
[ENA]
¡û
>W2010302923
CABVLI010000048
Alphaproteobacteria
Sphingomonas sp. EC-SD391 [CABVLI]
135580
135655
+
Ile2
CAT
[ENA]
¡û
>W2010311777
CABWMY010000001
Alphaproteobacteria
Sphingomonas sp. T1 [CABWMY]
40776
40701
-
Ile2
CAT
[ENA]
¡û
>W2010311936
CABWNA010000007
Alphaproteobacteria
Sphingomonas sp. AX6 [CABWNA]
600378
600303
-
Ile2
CAT
[ENA]
¡û
>W2010370608
CAHJXD010000095
Alphaproteobacteria
Sphingomonas bacterium [CAHJXD]
3822
3747
-
Ile2
CAT
[ENA]
¡û
>W2010560091
JAASQR010000002
Alphaproteobacteria
Sphingobium vermicomposti DSM 21299 [JAASQR]
556144
556219
+
Ile2
CAT
[ENA]
¡û
>W2010720867
JACIAP010000005
Alphaproteobacteria
Sphingomonas sp. BK481 [JACIAP]
88489
88564
+
Ile2
CAT
[ENA]
¡û
>W2010731539
JACIJD010000004
Alphaproteobacteria
Roseomonas pecuniae DSM 25622 [JACIJD]
90374
90298
-
Ile2
CAT
[ENA]
¡û
>W2010877719
MIAK01000010
Alphaproteobacteria
Sphingomonadales bacterium RIFCSPLOWO2_12_FULL_63_15 [MIAK]
37298
37373
+
Ile2
CAT
[ENA]
¡û
>W2011004324
NMUA01000005
Alphaproteobacteria
Sphingobium sp. D43FB [NMUA]
198513
198588
+
Ile2
CAT
[ENA]
¡û
>W2011354865
RAPZ01000010
Alphaproteobacteria
Sphingomonas sp. PP-CC-1A-547 [RAPZ]
145560
145635
+
Ile2
CAT
[ENA]
¡û
>W2011404451
RCWT01000009
Alphaproteobacteria
Sphingomonas sp. PP-F2F-G114-C0414 [RCWT]
978849
978774
-
Ile2
CAT
[ENA]
¡û
>W2011404777
RCWY01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-3A-406 [RCWY]
158361
158436
+
Ile2
CAT
[ENA]
¡û
>W2011536233
SCIN01000001
Alphaproteobacteria
Sphingomonas sp. UV9 [SCIN]
946680
946755
+
Ile2
CAT
[ENA]
¡û
>W2011578879
SGXR01000003
Alphaproteobacteria
Sphingomonas sp. BK036 [SGXR]
88214
88289
+
Ile2
CAT
[ENA]
¡û
>W2011619333
SLUY01000001
Alphaproteobacteria
Sphingomonas sp. PP-CC-3G-468 [SLUY]
145735
145810
+
Ile2
CAT
[ENA]
¡û
>W2011623843
SLXW01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-1G-424 [SLXW]
922300
922225
-
Ile2
CAT
[ENA]
¡û
>W2011624046
SLYA01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-1A-559 [SLYA]
1047504
1047429
-
Ile2
CAT
[ENA]
¡û
>W2011624178
SLYD01000004
Alphaproteobacteria
Sphingomonas sp. PP-F2F-A104-K0414 [SLYD]
90182
90257
+
Ile2
CAT
[ENA]
¡û
>W2011624296
SLYF01000008
Alphaproteobacteria
Sphingomonas sp. PP-CC-3A-396 [SLYF]
175175
175100
-
Ile2
CAT
[ENA]
¡û
>W2011839029
UGVN01000001
Alphaproteobacteria
Roseomonas mucosa NCTC13291 [UGVN]
279151
279079
-
Ile2
CAT
[ENA]
¡û
>W2011839040
UGVO01000001
Alphaproteobacteria
Roseomonas gilardii subsp. rosea NCTC13290 [UGVO]
912617
912689
+
Ile2
CAT
[ENA]
¡û
>W2012004746
VEIX01000009
Alphaproteobacteria
Roseomonas gilardii DE0006 [VEIX]
222836
222764
-
Ile2
CAT
[ENA]
¡û
>W2012106776
VOQR01000001
Alphaproteobacteria
Sphingomonas ginsenosidivorax KHI67 [VOQR]
2545373
2545448
+
Ile2
CAT
[ENA]
¡û
>W2012470609
WWDL01000006
Alphaproteobacteria
Roseomonas deserti CPCC 101081 [WWDL]
97581
97653
+
Ile2
CAT
[ENA]
¡û
>W2110243500
JACONT010000015
Alphaproteobacteria
Sphingomonas albertensis DOAB 1063 [JACONT]
22694
22769
+
Ile2
CAT
[ENA]
¡û
>W2110290249
JACYTY010000005
Alphaproteobacteria
Sphingomonas sp. CFBP 8765 CFBP8765 [JACYTY]
170386
170461
+
Ile2
CAT
[ENA]
¡û
>W2110290295
JACYTZ010000005
Alphaproteobacteria
Sphingomonas sp. CFBP 8764 CFBP8764 [JACYTZ]
86697
86772
+
Ile2
CAT
[ENA]
¡û
>W2110291033
JACYUS010000003
Alphaproteobacteria
Sphingomonas sp. CFBP 13728 CFBP13728 [JACYUS]
158039
158114
+
Ile2
CAT
[ENA]
¡û
>W2110291790
JACYVM010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13706 CFBP13706 [JACYVM]
146757
146682
-
Ile2
CAT
[ENA]
¡û
>W2110427242
JAELXS010000002
Alphaproteobacteria
Sphingomonas sp. BT553 [JAELXS]
251765
251840
+
Ile2
CAT
[ENA]
¡û
>W2110554394
JAGIOU010000001
Alphaproteobacteria
Sphingomonas sp. PvP018 [JAGIOU]
364133
364058
-
Ile2
CAT
[ENA]
¡û
>W2110556355
JAGIZA010000002
Alphaproteobacteria
Roseomonas sp. SG15 [JAGIZA]
418906
418830
-
Ile2
CAT
[ENA]
¡û
>W2110556410
JAGIZB010000007
Alphaproteobacteria
Roseomonas sp. SSH11 [JAGIZB]
67543
67471
-
Ile2
CAT
[ENA]
¡û
>W2110739840
JAJEWI010000001
Alphaproteobacteria
Sphingopyxis sp. FBM22 [JAJEWI]
268504
268429
-
Ile2
CAT
[ENA]
¡û
>C231032839
CP025061
Alphaproteobacteria
Roseomonas mucosa PG [CP025061]
3708312
3708240
-
Ile2
CAT
-
¡û
>C231245103
CP087719
Alphaproteobacteria
Roseomonas sp. OT10 [CP087719]
555455
555527
+
Ile2
CAT
-
¡û
>C231361864
CP095554
Alphaproteobacteria
Roseomonas gilardii subsp. gilardii ATCC 49956 [CP095554]
3887611
3887539
-
Ile2
CAT
-
¡û
>W2110762814
RCVR01000013
Alphaproteobacteria
Roseomonas sp. KE2513 [RCVR]
87279
87207
-
Ile2
CAT
[ENA]
¡û
>C231412943
CP099471
Alphaproteobacteria
Roseomonas mucosa TT14 [CP099471]
886573
886501
-
Ile2
CAT
-
¡û
>C241006657
AP022673
Alphaproteobacteria
Sphingomonas sp. HMP9 [AP022673]
308616
308541
-
Ile2
CAT
-
¡û
>C241086918
CP044117
Alphaproteobacteria
Roseomonas mucosa FDAARGOS_658 [CP044114, CP044115, CP044116, CP044117]
2564054
2563982
-
Ile2
CAT
-
¡û
>W2310021839
BSEF01000005
Alphaproteobacteria
Sphingobium sp. BS19 [BSEF]
91351
91276
-
Ile2
CAT
[ENA]
¡û
>W1511357067
JRVI01000111
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
10653
10728
+
Met
CAT
[ENA]
¡û
>C11124209
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
214079
214154
+
Met
CAT
[Ensembl]
¡û
>W121113820
ALOX01000004
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
162305
162233
-
Met
CAT
[ENA]
¡û
>W1610716136
LLWF01000116
Alphaproteobacteria
Roseomonas mucosa [LLWF]
10858
10930
+
Met
CAT
[ENA]
¡û
>W1610732534
LMKH01000037
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
145093
145168
+
Met
CAT
[ENA]
¡û
>W1610732829
LMKN01000009
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
490638
490713
+
Met
CAT
[ENA]
¡û
>W1610733102
LMKT01000024
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
606922
606997
+
Met
CAT
[ENA]
¡û
>W1610733236
LMKW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
445070
444995
-
Met
CAT
[ENA]
¡û
>W1610733259
LMKX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
88321
88396
+
Met
CAT
[ENA]
¡û
>W1610733390
LMKZ01000005
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
86733
86808
+
Met
CAT
[ENA]
¡û
>W1610733539
LMLC01000004
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
520713
520638
-
Met
CAT
[ENA]
¡û
>W1610733554
LMLD01000008
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
131019
131094
+
Met
CAT
[ENA]
¡û
>W1610734662
LMLW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
222821
222746
-
Met
CAT
[ENA]
¡û
>W1610739559
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
158254
158329
+
Met
CAT
[ENA]
¡û
>W1610741832
LMRS01000012
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
34387
34312
-
Met
CAT
[ENA]
¡û
>W1710084255
BDLP01000009
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
21277
21349
+
Met
CAT
[ENA]
¡û
>W1710571525
FOVZ01000003
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
148126
148201
+
Met
CAT
[ENA]
¡û
>W1710588271
FQZF01000002
Alphaproteobacteria
Roseomonas rosea [FQZF]
447074
447150
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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