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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281470 (54 seq.)
>W1710875551
LMOM01000012
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
88247
88322
+
Met
CAT
[ENA]
¡û
>W1711743917
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
2345009
2345084
+
Met
CAT
[ENA]
¡û
>W1712080680
NHMK01000030
Deinococcota
Deinococcus indicus [NHMK]
139971
139896
-
Met
CAT
[ENA]
¡û
>W131104574
APCS01000047
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
21089
21164
+
Met
CAT
[ENA]
¡û
>W131176785
ARKH01000109
Deinococcota
Deinococcus aquatilis DSM 23025 [ARKH]
35095
35170
+
Met
CAT
[ENA]
¡û
>W131178654
ARLS01000046
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
89862
89937
+
Met
CAT
[ENA]
¡û
>W131213916
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
107831
107756
-
Met
CAT
[ENA]
¡û
>W131237128
AUMV01000028
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
11860
11785
-
Met
CAT
[ENA]
¡û
>C007741
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
2090573
2090498
-
Met
CAT
[Ensembl]
¡û
>C007970
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
498507
498432
-
Met
CAT
[Ensembl]
¡û
>WENV180231907
OBCO01000030
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
197493
197568
+
Ile2
CAT
[ENA]
¢þ
>WENV180232916
OBCP01000031
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
197493
197568
+
Ile2
CAT
[ENA]
¢þ
>WENV180569681
OCLR01000306
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
36839
36764
-
Ile2
CAT
[ENA]
¢þ
>WENV180570717
OCLS01000439
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
15183
15108
-
Ile2
CAT
[ENA]
¢þ
>WENV180571276
OCLT01000033
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
197493
197568
+
Ile2
CAT
[ENA]
¢þ
>WENV180573515
OCLW01000032
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
197493
197568
+
Ile2
CAT
[ENA]
¢þ
>WENV180639588
OCRL01000035
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
197493
197568
+
Ile2
CAT
[ENA]
¢þ
>WENV180640516
OCRM01000033
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
197493
197568
+
Ile2
CAT
[ENA]
¢þ
>WENV181223695
OFDC01079771
[OFDC] hot springs metagenome; Water
201
126
-
Ile2
CAT
[ENA]
¢þ
>W141154775
AXLL01000068
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
13980
14055
+
Met
CAT
[ENA]
¡û
>W141169926
AXWT01000021
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
15385
15310
-
Met
CAT
[ENA]
¡û
>C181134283
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
456708
456783
+
Met
CAT
-
¡û
>C181179556
CP029494
Deinococcota
Deinococcus irradiatisoli 17bor-2 [CP029494]
2676236
2676311
+
Met
CAT
-
¡û
>C181185108
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
2323499
2323424
-
Met
CAT
-
¡û
>C181196491
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
53545
53470
-
Met
CAT
-
¡û
>C191018440
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
1041345
1041420
+
Met
CAT
-
¡û
>W141525665
JHAC01000004
Deinococcota
Deinococcus phoenicis [JHAC]
170331
170406
+
Met
CAT
[ENA]
¡û
>W141561443
JHYL01000001
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
197785
197860
+
Met
CAT
[ENA]
¡û
>W141702046
JMLF01000001
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
197670
197745
+
Met
CAT
[ENA]
¡û
>W141711968
JMQF01000058
Deinococcota
Deinococcus sp. RL [JMQF]
105531
105606
+
Met
CAT
[ENA]
¡û
>W09101981
AAHE01000001
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
139208
139133
-
Met
CAT
[ENA]
¡û
>W141821116
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
2298110
2298185
+
Met
CAT
[ENA]
¡û
>C09103907
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
2108598
2108523
-
Met
CAT
[Ensembl]
¡û
>W1911597461
PNOR01000004
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
44334
44409
+
Met
CAT
[ENA]
¡û
>W1911788284
QYCQ01000172
Deinococcota
Deinococcus sp. RM [QYCQ]
1796
1871
+
Met
CAT
[ENA]
¡û
>W1810003534
BFAG01000005
Deinococcota
Deinococcus aerius TR0125 [BFAG]
84884
84959
+
Met
CAT
[ENA]
¡û
>W1810238307
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
593305
593380
+
Met
CAT
[ENA]
¡û
>W1810423333
PYSV01000007
Deinococcota
Deinococcus arcticus OD32 [PYSV]
111193
111118
-
Met
CAT
[ENA]
¡û
>W1810671628
QJSX01000021
Deinococcota
Deinococcus yavapaiensis KR-236 DSM 18048 [QJSX]
25168
25243
+
Met
CAT
[ENA]
¡û
>C151081919
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
882588
882513
-
Met
CAT
[Ensembl]
¡û
>C10105372
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
498507
498432
-
Met
CAT
[Ensembl]
¡û
>C11107142
CP002454
Deinococcota
Deinococcus maricopensis DSM 21211 [CP002454]
2753505
2753430
-
Met
CAT
[Ensembl]
¡û
>C11107299
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
498507
498432
-
Met
CAT
[Ensembl]
¡û
>C121002082
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
2581112
2581037
-
Met
CAT
[Ensembl]
¡û
>C161034752
CP011387
Deinococcota
Deinococcus puniceus DY1 [CP011387]
2769085
2769010
-
Met
CAT
[Ensembl]
¡û
>C161061613
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
2237835
2237760
-
Met
CAT
[Ensembl]
¡û
>C161082974
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
2227074
2227149
+
Met
CAT
-
¡û
>W1610061574
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
1037075
1037150
+
Met
CAT
[ENA]
¡û
>W1610638987
LIYN01000224
Deinococcota
Deinococcus sp. UR1 [LIYN]
11600
11675
+
Met
CAT
[ENA]
¡û
>W1610737897
LMOM01000012
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
88247
88322
+
Met
CAT
[ENA]
¡û
>W1710059239
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
1037075
1037150
+
Met
CAT
[ENA]
¡û
>W1710542279
FNZA01000016
Deinococcota
Deinococcus reticulitermitis [FNZA]
9949
9874
-
Met
CAT
[ENA]
¡û
>W1710605339
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
377262
377187
-
Met
CAT
[ENA]
¡û
>W1710774881
LIYN01000224
Deinococcota
Deinococcus sp. UR1 [LIYN]
11600
11675
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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