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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290337 (23 seq.)
>WENV180995030
ODVR01000314
[ODVR] human metagenome; G_DNA_Stool
37954
37880
-
Gln
TTG
[ENA]
¡û
>WENV181420396
OGCN01002304
[OGCN] human gut metagenome; human gut
12247
12173
-
Gln
TTG
[ENA]
¡û
>WENV181434304
OGDF01000560
[OGDF] human gut metagenome; human gut
24584
24510
-
Gln
TTG
[ENA]
¡û
>WENV181467805
OGER01056877
[OGER] metagenome; Human gut stool
135
209
+
Gln
TTG
[ENA]
¡û
>WENV182022997
OHCE01000036
[OHCE] human gut metagenome; feces
90893
90819
-
Gln
TTG
[ENA]
¡û
>WENV182118326
OHJG01000167
[OHJG] human gut metagenome; feces
35192
35118
-
Gln
TTG
[ENA]
¡û
>WENV182119831
OHJJ01000029
[OHJJ] human gut metagenome; feces
34029
34103
+
Gln
TTG
[ENA]
¡û
>WENV182225189
OHRD01000112
[OHRD] human gut metagenome; feces
35192
35118
-
Gln
TTG
[ENA]
¡û
>WENV182289423
OHVW01000056
[OHVW] human gut metagenome; feces
11101
11027
-
Gln
TTG
[ENA]
¡û
>WENV182293170
OHWC01000076
[OHWC] human gut metagenome; feces
46596
46522
-
Gln
TTG
[ENA]
¡û
>WENV182294642
OHWE01000098
[OHWE] human gut metagenome; feces
40187
40113
-
Gln
TTG
[ENA]
¡û
>WENV182303331
OHWU01014565
[OHWU] human gut metagenome; feces
253
327
+
Gln
TTG
[ENA]
¡û
>WENV182309230
OHXK01000055
[OHXK] human gut metagenome; feces
46596
46522
-
Gln
TTG
[ENA]
¡û
>WENV182321195
OHYL01001422
[OHYL] human gut metagenome; feces
5210
5136
-
Gln
TTG
[ENA]
¡û
>WENV182341413
OIAG01000027
[OIAG] human gut metagenome; feces
46604
46530
-
Gln
TTG
[ENA]
¡û
>WENV182349098
OIBA01007045
[OIBA] human gut metagenome; feces
564
490
-
Gln
TTG
[ENA]
¡û
>WENV182357361
OIBT01000039
[OIBT] human gut metagenome; feces
58219
58145
-
Gln
TTG
[ENA]
¡û
>WENV182371720
OICV01000016
[OICV] human gut metagenome; feces
31272
31198
-
Gln
TTG
[ENA]
¡û
>WENV182373648
OICZ01015289
[OICZ] human gut metagenome; feces
242
168
-
Gln
TTG
[ENA]
¡û
>WENV182373893
OIDA01000321
[OIDA] human gut metagenome; feces
1854
1780
-
Gln
TTG
[ENA]
¡û
>WENV182379465
OIDM01000257
[OIDM] human gut metagenome; feces
13523
13449
-
Gln
TTG
[ENA]
¡û
>WENV182380393
OIDP01000095
[OIDP] human gut metagenome; feces
14712
14786
+
Gln
TTG
[ENA]
¡û
>WENV182387883
OIEB01000061
[OIEB] human gut metagenome; feces
46510
46436
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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