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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290444 (134 seq.)
>W1710792862
LJOS01000006
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
88656
88729
+
His
GTG
[ENA]
¡û
>W1710792994
LJOW01000010
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
42761
42834
+
His
GTG
[ENA]
¡û
>W1710793097
LJOY01000005
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
83750
83823
+
His
GTG
[ENA]
¡û
>W1711460766
MJGC01000023
Cyanobacteriota
Desertifilum tharense IPPAS B-1220 [MJGC]
381
308
-
His
GTG
[ENA]
¡û
>W1711711341
MTAV01000146
Cyanobacteriota
Nostoc sp. T09 [MTAV]
39199
39126
-
His
GTG
[ENA]
¡û
>W131110083
APIY01000037
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
4459
4532
+
His
GTG
[ENA]
¡û
>W131110147
APIZ01000230
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
5271
5198
-
His
GTG
[ENA]
¡û
>WENV180013105
FMSI01045693
[FMSI] soil metagenome; Soil
6522
6449
-
His
GTG
[ENA]
¡û
>W141091964
AUZM01000074
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
9136
9209
+
His
GTG
[ENA]
¡û
>W08011525
ABVJ01000003
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
38406
38479
+
His
GTG
[ENA]
¡û
>WENV181841043
OGVQ01000003
[OGVQ] freshwater metagenome; freshwater
79987
79914
-
His
GTG
[ENA]
¡û
>C181004889
AP018254
Cyanobacteriota
Calothrix sp. NIES-3974 [AP018254]
3634812
3634885
+
His
GTG
-
¡û
>C191085210
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
277854
277927
+
His
GTG
-
¡û
>W09125746
ACIR01000012
Cyanobacteriota
Trichormus azollae 708 [ACIR]
7103
7030
-
His
GTG
[ENA]
¡û
>W1910175556
BJCF01000029
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
5532
5459
-
His
GTG
[ENA]
¡û
>C141007954
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
573613
573540
-
His
GTG
-
¡û
>C09103566
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
31582
31655
+
His
GTG
[Ensembl]
¡û
>W1910596169
LAGX01000001
Cyanobacteriota
Nostoc linckia z1 [LAGX]
246376
246449
+
His
GTG
[ENA]
¡û
>W1910596254
LAGY01000001
Cyanobacteriota
Nostoc linckia z2 [LAGY]
246147
246220
+
His
GTG
[ENA]
¡û
>W1910596336
LAGZ01000002
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
246305
246378
+
His
GTG
[ENA]
¡û
>W1910596456
LAHA01000025
Cyanobacteriota
Nostoc linckia z4 [LAHA]
18843
18916
+
His
GTG
[ENA]
¡û
>W1910596498
LAHB01000002
Cyanobacteriota
Nostoc linckia z6 [LAHB]
240118
240191
+
His
GTG
[ENA]
¡û
>W1910596578
LAHC01000001
Cyanobacteriota
Nostoc linckia z7 [LAHC]
246560
246633
+
His
GTG
[ENA]
¡û
>W1910596732
LAHD01000127
Cyanobacteriota
Nostoc linckia z8 [LAHD]
6078
6005
-
His
GTG
[ENA]
¡û
>W1910596817
LAHE01000121
Cyanobacteriota
Nostoc linckia z9 [LAHE]
6073
6000
-
His
GTG
[ENA]
¡û
>W1910596865
LAHF01000044
Cyanobacteriota
Nostoc linckia z13 [LAHF]
23030
22957
-
His
GTG
[ENA]
¡û
>W1910596990
LAHG01000128
Cyanobacteriota
Nostoc linckia z14 [LAHG]
6058
5985
-
His
GTG
[ENA]
¡û
>W1910597020
LAHH01000020
Cyanobacteriota
Nostoc linckia z15 [LAHH]
72462
72535
+
His
GTG
[ENA]
¡û
>W1910597149
LAHI01000075
Cyanobacteriota
Nostoc linckia z16 [LAHI]
18876
18949
+
His
GTG
[ENA]
¡û
>W1910597248
LAHJ01000116
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
6241
6168
-
His
GTG
[ENA]
¡û
>W1910613528
LGSU01001111
Cyanobacteriota
Hydrocoleum sp. CS-953 [LGSU]
4998
4925
-
His
GTG
[ENA]
¡û
>W1910792682
MRBZ01000052
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
25921
25848
-
His
GTG
[ENA]
¡û
>SRA1016627
SRR027368.36912
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016630
SRR027369.32567
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016631
SRR027369.35373
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016633
SRR027369.38993
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016636
SRR027369.42522
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016639
SRR027369.45957
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016640
SRR027369.45981
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016641
SRR027369.46848
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
158
233
+
His
GTG
[SRA]
>SRA1016642
SRR027369.47403
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016643
SRR027369.47919
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016645
SRR027369.48472
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016647
SRR027369.49042
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016648
SRR027369.49731
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016649
SRR027369.50277
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016650
SRR027369.50391
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016651
SRR027369.51187
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016652
SRR027369.51195
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016653
SRR027369.51200
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016654
SRR027369.51745
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
153
228
+
His
GTG
[SRA]
>SRA1016655
SRR027369.51809
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016656
SRR027369.51946
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016659
SRR027369.54109
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
160
235
+
His
GTG
[SRA]
>SRA1016660
SRR027369.54189
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>SRA1016661
SRR027369.54491
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
159
234
+
His
GTG
[SRA]
>W2010088780
BJCF01000029
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
5532
5459
-
His
GTG
[ENA]
¡û
>W2010145665
BLZO01000042
Cyanobacteriota
Okeania sp. KiyG1 [BLZO]
61362
61289
-
His
GTG
[ENA]
¡û
>W2010469033
JAAGOG010000091
Cyanobacteriota
Nostoc sp. UIC 10630 [JAAGOG]
697
624
-
His
GTG
[ENA]
¡û
>W2010766512
LAGX01000001
Cyanobacteriota
Nostoc linckia z1 [LAGX]
246376
246449
+
His
GTG
[ENA]
¡û
>W2010766597
LAGY01000001
Cyanobacteriota
Nostoc linckia z2 [LAGY]
246147
246220
+
His
GTG
[ENA]
¡û
>W2010766679
LAGZ01000002
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
246305
246378
+
His
GTG
[ENA]
¡û
>W2010766799
LAHA01000025
Cyanobacteriota
Nostoc linckia z4 [LAHA]
18843
18916
+
His
GTG
[ENA]
¡û
>W2010766841
LAHB01000002
Cyanobacteriota
Nostoc linckia z6 [LAHB]
240118
240191
+
His
GTG
[ENA]
¡û
>W2010766921
LAHC01000001
Cyanobacteriota
Nostoc linckia z7 [LAHC]
246560
246633
+
His
GTG
[ENA]
¡û
>W2010767075
LAHD01000127
Cyanobacteriota
Nostoc linckia z8 [LAHD]
6078
6005
-
His
GTG
[ENA]
¡û
>W2010767160
LAHE01000121
Cyanobacteriota
Nostoc linckia z9 [LAHE]
6073
6000
-
His
GTG
[ENA]
¡û
>W2010767333
LAHG01000128
Cyanobacteriota
Nostoc linckia z14 [LAHG]
6058
5985
-
His
GTG
[ENA]
¡û
>W2010767363
LAHH01000020
Cyanobacteriota
Nostoc linckia z15 [LAHH]
72462
72535
+
His
GTG
[ENA]
¡û
>W2010767492
LAHI01000075
Cyanobacteriota
Nostoc linckia z16 [LAHI]
18876
18949
+
His
GTG
[ENA]
¡û
>W2010767591
LAHJ01000116
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
6241
6168
-
His
GTG
[ENA]
¡û
>W2010773130
LGSU01001111
Cyanobacteriota
Hydrocoleum sp. CS-953 [LGSU]
4998
4925
-
His
GTG
[ENA]
¡û
>W2010901144
MRBZ01000052
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
25921
25848
-
His
GTG
[ENA]
¡û
>W2011391921
RCBY01000131
Cyanobacteriota
Okeania hirsuta PAB10Feb10-1 [RCBY]
12106
12179
+
His
GTG
[ENA]
¡û
>W2011391958
RCBZ01000311
Cyanobacteriota
Okeania hirsuta PAP21Jun06-1 [RCBZ]
11896
11969
+
His
GTG
[ENA]
¡û
>W2011750649
SZNH01000006
Cyanobacteriota
Nostoc sp. PA-18-2419 JC1668 [SZNH]
143113
143186
+
His
GTG
[ENA]
¡û
>W2012039673
VILE01000010
Cyanobacteriota
Dolichospermum planctonicum UHCC 0167 [VILE]
36093
36166
+
His
GTG
[ENA]
¡û
>W2012378533
WMIA01000005
Cyanobacteriota
Cyanobacterium aponinum 0216 [WMIA]
110296
110369
+
His
GTG
[ENA]
¡û
>W2012458180
WVID01000007
Cyanobacteriota
Nostoc sp. B(2019) [WVID]
21983
21910
-
His
GTG
[ENA]
¡û
>W2110203481
JACERF010000011
Cyanobacteriota
Desmonostoc muscorum CCALA 125 [JACERF]
65874
65947
+
His
GTG
[ENA]
¡û
>W2110229075
JACJPX010000130
Cyanobacteriota
Calothrix membranacea FACHB-236 [JACJPX]
10288
10361
+
His
GTG
[ENA]
¡û
>W2110229132
JACJPZ010000018
Cyanobacteriota
Anabaena sp. FACHB-1250 [JACJPZ]
33930
34003
+
His
GTG
[ENA]
¡û
>W2110229376
JACJQF010000018
Cyanobacteriota
Calothrix sp. FACHB-168 [JACJQF]
154827
154900
+
His
GTG
[ENA]
¡û
>W2110229431
JACJQG010000018
Cyanobacteriota
Calothrix anomala FACHB-343 [JACJQG]
51300
51373
+
His
GTG
[ENA]
¡û
>W2110229494
JACJQH010000021
Cyanobacteriota
Calothrix parietina FACHB-288 [JACJQH]
51294
51367
+
His
GTG
[ENA]
¡û
>W2110229655
JACJQJ010000121
Cyanobacteriota
Nostoc linckia FACHB-104 [JACJQJ]
12600
12527
-
His
GTG
[ENA]
¡û
>W2110230414
JACJQZ010000013
Cyanobacteriota
Desertifilum sp. FACHB-1129 [JACJQZ]
370
297
-
His
GTG
[ENA]
¡û
>W2110230486
JACJRA010000034
Cyanobacteriota
Desertifilum sp. FACHB-866 [JACJRA]
31939
31866
-
His
GTG
[ENA]
¡û
>W2110230538
JACJRB010000035
Cyanobacteriota
Desertifilum sp. FACHB-868 [JACJRB]
10497
10570
+
His
GTG
[ENA]
¡û
>W2110230613
JACJRD010000005
Cyanobacteriota
Calothrix sp. FACHB-156 [JACJRD]
69654
69581
-
His
GTG
[ENA]
¡û
>W2110230682
JACJRE010000026
Cyanobacteriota
Tolypothrix sp. FACHB-123 [JACJRE]
87527
87600
+
His
GTG
[ENA]
¡û
>W2110231217
JACJRO010000019
Cyanobacteriota
Aphanizomenon flos-aquae FACHB-1171 [JACJRO]
59850
59777
-
His
GTG
[ENA]
¡û
>W2110231365
JACJRR010000005
Cyanobacteriota
Cyanobacterium aponinum FACHB-4101 [JACJRR]
139322
139249
-
His
GTG
[ENA]
¡û
>W2110231844
JACJSB010000018
Cyanobacteriota
Dolichospermum sp. FACHB-1091 [JACJSB]
25247
25320
+
His
GTG
[ENA]
¡û
>W2110232192
JACJSJ010000017
Cyanobacteriota
Nostoc sp. FACHB-973 [JACJSJ]
44687
44614
-
His
GTG
[ENA]
¡û
>W2110232546
JACJSQ010000018
Cyanobacteriota
Aphanizomenon sp. FACHB-1399 [JACJSQ]
59870
59797
-
His
GTG
[ENA]
¡û
>W2110232571
JACJSR010000012
Cyanobacteriota
Aphanizomenon flos-aquae FACHB-1290 [JACJSR]
59740
59667
-
His
GTG
[ENA]
¡û
>W2110233006
JACJTC010000005
Cyanobacteriota
Nostoc punctiforme FACHB-252 [JACJTC]
295359
295432
+
His
GTG
[ENA]
¡û
>W2110233503
JACJTM010000020
Cyanobacteriota
Aphanizomenon flos-aquae FACHB-1249 [JACJTM]
59870
59797
-
His
GTG
[ENA]
¡û
>W2110233573
JACJTO010000017
Cyanobacteriota
Aphanizomenon flos-aquae FACHB-1287 [JACJTO]
19007
19080
+
His
GTG
[ENA]
¡û
>W2110233599
JACJTP010000008
Cyanobacteriota
Aphanizomenon flos-aquae FACHB-1416 [JACJTP]
59850
59777
-
His
GTG
[ENA]
¡û
>W2110233713
JACJTR010000064
Cyanobacteriota
Nostoc sp. FACHB-892 [JACJTR]
16084
16157
+
His
GTG
[ENA]
¡û
>W2110285202
JACXXN010000007
Cyanobacteriota
Nostoc sp. MG11 [JACXXN]
41999
41926
-
His
GTG
[ENA]
¡û
>W2110310945
JADEWD010000082
Cyanobacteriota
Cuspidothrix issatschenkoi LEGE 03284 [JADEWD]
6701
6627
-
His
GTG
[ENA]
¡û
>W2110312835
JADEXS010000042
Cyanobacteriota
Desmonostoc muscorum LEGE 12446 [JADEXS]
16994
17067
+
His
GTG
[ENA]
¡û
>C201088950
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
2192336
2192263
-
His
GTG
-
¡û
>C211280897
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
796944
797017
+
His
GTG
-
¡û
>C231396186
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
371352
371279
-
His
GTG
-
¡û
>W2110773451
VJXY01000054
Cyanobacteriota
Komarekiella sp. 'clone 1' [VJXY]
15812
15885
+
His
GTG
[ENA]
¡û
>C241145268
CP050440
Cyanobacteriota
Tolypothrix sp. PCC 7910 [CP050440]
7931265
7931192
-
His
GTG
-
¡û
>C241188890
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
2219446
2219373
-
His
GTG
-
¡û
>C241190868
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
2195474
2195401
-
His
GTG
-
¡û
>C241192284
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
2197453
2197380
-
His
GTG
-
¡û
>C241253185
CP124543
Cyanobacteriota
Halotia branconii CENA392 [CP124543]
5052746
5052673
-
His
GTG
-
¡û
>C241293705
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
2221656
2221583
-
His
GTG
-
¡û
>C241293732
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
2482558
2482485
-
His
GTG
-
¡û
>C241316034
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
793520
793593
+
His
GTG
-
¡û
>C241316490
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
802167
802240
+
His
GTG
-
¡û
>C241316576
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
2482489
2482416
-
His
GTG
-
¡û
>C241316663
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
2221656
2221583
-
His
GTG
-
¡û
>C241316701
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
2221501
2221428
-
His
GTG
-
¡û
>C241316803
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
2203319
2203246
-
His
GTG
-
¡û
>C11115542
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
3566705
3566778
+
His
GTG
[Ensembl]
¡û
>W1511582911
LATL02000228
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
3474
3547
+
His
GTG
[ENA]
¡û
>W1610084867
CDHJ01000123
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
14849
14776
-
His
GTG
[ENA]
¡û
>C131010503
CP003947
Cyanobacteriota
Cyanobacterium aponinum PCC 10605 [CP003947]
1677665
1677592
-
His
GTG
[Ensembl]
¡û
>C131004873
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
2767872
2767945
+
His
GTG
[Ensembl]
¡û
>W1610656826
LJOS01000006
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
88656
88729
+
His
GTG
[ENA]
¡û
>W1610656897
LJOT01000329
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
2497
2424
-
His
GTG
[ENA]
¡û
>W1610656998
LJOW01000010
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
42761
42834
+
His
GTG
[ENA]
¡û
>W1610657061
LJOX01000013
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
60243
60316
+
His
GTG
[ENA]
¡û
>W1610657101
LJOY01000005
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
83750
83823
+
His
GTG
[ENA]
¡û
>W1610926461
LTEC01000001
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
12230
12303
+
His
GTG
[ENA]
¡û
>W1710089729
CDHJ01000123
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
14849
14776
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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