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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292012 (29 seq.)
>WENV182078456
OHGA01000032
[OHGA] human gut metagenome; feces
411
336
-
fMet
CAT
[ENA]
¡û
>WENV182088238
OHGX01002306
[OHGX] human gut metagenome; feces
4570
4645
+
fMet
CAT
[ENA]
¡û
>WENV182124515
OHJR01000032
[OHJR] human gut metagenome; feces
50051
50126
+
fMet
CAT
[ENA]
¡û
>WENV182176825
OHNJ01000022
[OHNJ] human gut metagenome; feces
50023
50098
+
fMet
CAT
[ENA]
¡û
>WENV182186293
OHOI01010766
[OHOI] human gut metagenome; feces
86
11
-
fMet
CAT
[ENA]
¡û
>WENV182192432
OHOZ01009553
[OHOZ] human gut metagenome; feces
2004
1929
-
fMet
CAT
[ENA]
¡û
>WENV182393176
OIEH01010471
[OIEH] human gut metagenome; human gut
717
642
-
fMet
CAT
[ENA]
¡û
>WENV182513730
OIWM01001332
[OIWM] human gut metagenome; faeces
8154
8229
+
fMet
CAT
[ENA]
¡û
>WENV182607724
OJJU01031194
[OJJU] metagenome; faeces
360
435
+
fMet
CAT
[ENA]
¡û
>WENV182873259
OKRW01000163
[OKRW] human gut metagenome; faeces
7282
7357
+
fMet
CAT
[ENA]
¡û
>WENV182885450
OKSC01007220
[OKSC] human gut metagenome; faeces
3231
3306
+
fMet
CAT
[ENA]
¡û
>WENV183036083
OLGA01000125
[OLGA] human gut metagenome; faeces
62496
62421
-
fMet
CAT
[ENA]
¡û
>WENV183042985
OLGD01014553
[OLGD] human gut metagenome; faeces
2058
2133
+
fMet
CAT
[ENA]
¡û
>WENV183156937
OLOS01060649
[OLOS] human gut metagenome; faeces
470
545
+
fMet
CAT
[ENA]
¡û
>WENV183165375
OLOX01004695
[OLOX] human gut metagenome; faeces
8961
9036
+
fMet
CAT
[ENA]
¡û
>WENV183213595
OLQD01107608
[OLQD] human gut metagenome; faeces
315
240
-
fMet
CAT
[ENA]
¡û
>WENV183280091
OLSB01002063
[OLSB] human gut metagenome; faeces
9146
9071
-
fMet
CAT
[ENA]
¡û
>WENV183294491
OLSK01023565
[OLSK] human gut metagenome; faeces
83
8
-
fMet
CAT
[ENA]
¡û
>WENV183434329
OMBZ01000415
[OMBZ] human gut metagenome; feces
333
258
-
fMet
CAT
[ENA]
¡û
>WENV183453724
OMDE01001191
[OMDE] human gut metagenome; feces
141
66
-
fMet
CAT
[ENA]
¡û
>WENV183473887
OMET01000097
[OMET] human gut metagenome; feces
312
237
-
fMet
CAT
[ENA]
¡û
>WENV170687042
LFRM01174526
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1741
1666
-
Met
CAT
[ENA]
¡û
>WENV170718358
LSQX01072434
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
203
278
+
Met
CAT
[ENA]
¡û
>WENV170726624
LSQX01387769
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1268
1193
-
Met
CAT
[ENA]
¡û
>WENV170970406
MTKW01067944
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2022
2097
+
Met
CAT
[ENA]
¡û
>WENV170970691
MTKW01084431
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1311
1236
-
Met
CAT
[ENA]
¡û
>WENV170977676
MTKZ01028860
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
556
631
+
Met
CAT
[ENA]
¡û
>W1911662081
QFGB01000058
Bacillota
Pelotomaculum sp. FP [QFGB]
21681
21756
+
Met
CAT
[ENA]
¡û
>W2011241688
QFGB01000058
Bacillota
Pelotomaculum sp. FP [QFGB]
21681
21756
+
fMet
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK