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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294221 (99 seq.)
>W1710797267
LJSX01000008
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
88594
88519
-
Phe
GAA
[ENA]
¡û
>W1710815814
LKKO01000047
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
8341
8266
-
Phe
GAA
[ENA]
¡û
>W1710863930
LMFM01000014
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
225898
225973
+
Phe
GAA
[ENA]
¡û
>W1710864251
LMFS01000003
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
795669
795744
+
Phe
GAA
[ENA]
¡û
>W1710867300
LMID01000014
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
199241
199316
+
Phe
GAA
[ENA]
¡û
>W1710870542
LMKP01000011
Alphaproteobacteria
Sphingomonas sp. Leaf22 [LMKP]
12019
12094
+
Phe
GAA
[ENA]
¡û
>W1710871845
LMLN01000013
Alphaproteobacteria
Sphingomonas sp. Leaf62 [LMLN]
199970
200045
+
Phe
GAA
[ENA]
¡û
>W1710872978
LMMK01000044
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
14357
14432
+
Phe
GAA
[ENA]
¡û
>W1710873440
LMMU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
1610442
1610517
+
Phe
GAA
[ENA]
¡û
>W1710873712
LMMZ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
187790
187715
-
Phe
GAA
[ENA]
¡û
>W1710873949
LMNE01000073
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
136894
136969
+
Phe
GAA
[ENA]
¡û
>W1710874145
LMNJ01000005
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
89431
89356
-
Phe
GAA
[ENA]
¡û
>W1710874266
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
259456
259381
-
Phe
GAA
[ENA]
¡û
>W1710874357
LMNN01000022
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
521360
521285
-
Phe
GAA
[ENA]
¡û
>W1710874445
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
299397
299472
+
Phe
GAA
[ENA]
¡û
>W1710874495
LMNQ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
22533
22458
-
Phe
GAA
[ENA]
¡û
>W1710874672
LMNU01000039
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
995
920
-
Phe
GAA
[ENA]
¡û
>W1710892412
LNDS01000027
Alphaproteobacteria
Rhizobiales bacterium Ga0077525 [LNDS]
106824
106899
+
Phe
GAA
[ENA]
¡û
>W1711072768
LSHX01000025
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
729
804
+
Phe
GAA
[ENA]
¡û
>W1711073999
LSJC01000214
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
5650
5725
+
Phe
GAA
[ENA]
¡û
>W1711074000
LSJC01000214
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
4341
4266
-
Phe
GAA
[ENA]
¡û
>W1711075125
LSKD01000034
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
4341
4266
-
Phe
GAA
[ENA]
¡û
>W1711075293
LSKH01000073
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
7876
7801
-
Phe
GAA
[ENA]
¡û
>W1711075362
LSKI01000158
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
3952
3877
-
Phe
GAA
[ENA]
¡û
>W1711075599
LSKO01001061
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
3961
3886
-
Phe
GAA
[ENA]
¡û
>W1711075672
LSKP01000094
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
735
810
+
Phe
GAA
[ENA]
¡û
>W1711386370
MEFG01000020
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
63623
63698
+
Phe
GAA
[ENA]
¡û
>W1711502549
MKSU01000017
Alphaproteobacteria
Sphingomonas sp. 67-36 [MKSU]
84022
84097
+
Phe
GAA
[ENA]
¡û
>C171092150
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
4330223
4330298
+
Phe
GAA
-
¡û
>C171115203
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
4470423
4470348
-
Phe
GAA
-
¡û
>C171117080
CP021181
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [CP021181]
746365
746290
-
Phe
GAA
-
¡û
>W131196579
ASTM01000012
Alphaproteobacteria
Sphingomonas sp. YL-JM2C [ASTM]
284
359
+
Phe
GAA
[ENA]
¡û
>WENV180020547
FTCZ01005934
[FTCZ] metagenome; soil
5648
5573
-
Phe
GAA
[ENA]
¢þ
>WENV181226876
OFDN01000253
[OFDN] hot springs metagenome; Water
11554
11629
+
Phe
GAA
[ENA]
¢þ
>WENV181234009
OFET01000756
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
77
2
-
Phe
GAA
[ENA]
¢þ
>WENV181307928
OFIS01000041
[OFIS] sludge metagenome; sludge
7111
7186
+
Phe
GAA
[ENA]
¢þ
>WENV181311916
OFJB01022343
[OFJB] sludge metagenome; sludge
329
404
+
Phe
GAA
[ENA]
¢þ
>C08006511
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
2942638
2942566
-
Phe
GAA
[Ensembl]
¡û
>WENV183528747
ONZX01005230
[ONZX] human gut metagenome; human gut
3814
3739
-
Phe
GAA
[ENA]
¢þ
>WENV183636354
OOKD01000072
[OOKD] human gut metagenome; Skin biopsy
45757
45682
-
Phe
GAA
[ENA]
¢þ
>WENV170004190
AGTN01595332
[AGTN] bioreactor metagenome; poplar biomass
59
134
+
Phe
GAA
[ENA]
¢þ
>WENV170018568
BBPD01000013
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
82299
82374
+
Phe
GAA
[ENA]
¢þ
>WENV170019681
BBPE01000046
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
488
413
-
Phe
GAA
[ENA]
¢þ
>WENV170675529
LCWZ01111899
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
124
49
-
Phe
GAA
[ENA]
¢þ
>WENV170682381
LFIK01000040
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
27242
27317
+
Phe
GAA
[ENA]
¢þ
>WENV170682784
LFIK01001263
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
15472
15547
+
Phe
GAA
[ENA]
¢þ
>W141452337
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
601831
601756
-
Phe
GAA
[ENA]
¡û
>WENV170994301
MWWD01065331
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
169
94
-
Phe
GAA
[ENA]
¢þ
>C181081596
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
1406768
1406843
+
Phe
GAA
-
¡û
>C181227837
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
2947999
2948074
+
Phe
GAA
-
¡û
>W09106846
ABEC01000002
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
15642
15567
-
Phe
GAA
[ENA]
¡û
>C09107440
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
3002460
3002385
-
Phe
GAA
[Ensembl]
¡û
>C09107527
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
3293567
3293492
-
Phe
GAA
[Ensembl]
¡û
>C09107628
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
2938592
2938517
-
Phe
GAA
[Ensembl]
¡û
>W1911411144
NWUF01000007
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
137453
137378
-
Phe
GAA
[ENA]
¡û
>W1911708550
QOWC01000024
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
53085
53010
-
Phe
GAA
[ENA]
¡û
>W1911719025
QQWV01000018
Alphaproteobacteria
Sphingomonas sp. ABOLH ABOLH S-NIH.Pt17_1112 [QQWV]
2156
2231
+
Phe
GAA
[ENA]
¡û
>W1911719075
QQWW01000006
Alphaproteobacteria
Sphingomonas sp. ABOLG ABOLG S-NIH.Pt13_0512 [QQWW]
28632
28707
+
Phe
GAA
[ENA]
¡û
>W1911752762
QWLV01000002
Alphaproteobacteria
Sphingomonas gilva ZDH117 [QWLV]
732347
732422
+
Phe
GAA
[ENA]
¡û
>W1911765805
QXDC01000005
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
276508
276583
+
Phe
GAA
[ENA]
¡û
>W1911783357
QXTF01000001
Alphaproteobacteria
Sphingomonas edaphi DAC4 [QXTF]
1025512
1025587
+
Phe
GAA
[ENA]
¡û
>W1810057225
PDHT01000070
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
8228
8303
+
Phe
GAA
[ENA]
¡û
>W1810487209
QAYK01000004
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
243107
243032
-
Phe
GAA
[ENA]
¡û
>W1810725217
QOCK01000001
Alphaproteobacteria
'Sphingomonas ginsengisoli' Hoang et al. 2012 KCTC 12630 [QOCK]
1147539
1147614
+
Phe
GAA
[ENA]
¡û
>W1810789363
QRGO01000001
Alphaproteobacteria
Undibacter mobilis GY_H [QRGO]
596127
596052
-
Phe
GAA
[ENA]
¡û
>W1810917821
QWDF01000001
Alphaproteobacteria
Sphingomonas mesophila SYSUP0001 [QWDF]
1795055
1795130
+
Phe
GAA
[ENA]
¡û
>SRA1015632
SRR023846.138596
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
167
92
-
Phe
GAA
[SRA]
>SRA1015807
SRR023846.207793
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
167
92
-
Phe
GAA
[SRA]
>SRA1016419
SRR023846.488727
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
167
92
-
Phe
GAA
[SRA]
>W1511587087
LAZX01000092
Alphaproteobacteria
Sphingomonas sp. Ag1 [LAZX]
127883
127808
-
Phe
GAA
[ENA]
¡û
>W121034431
AHKO01000338
Alphaproteobacteria
Rhizorhabdus wittichii DP58 [AHKO]
256
331
+
Phe
GAA
[ENA]
¡û
>W1610516205
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1765226
1765301
+
Phe
GAA
[ENA]
¡û
>W1610661224
LJSX01000008
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
88594
88519
-
Phe
GAA
[ENA]
¡û
>W1610679911
LKKO01000047
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
8341
8266
-
Phe
GAA
[ENA]
¡û
>W1610726276
LMFM01000014
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
225898
225973
+
Phe
GAA
[ENA]
¡û
>W1610726597
LMFS01000003
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
795669
795744
+
Phe
GAA
[ENA]
¡û
>W1610729646
LMID01000014
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
199241
199316
+
Phe
GAA
[ENA]
¡û
>W1610732888
LMKP01000011
Alphaproteobacteria
Sphingomonas sp. Leaf22 [LMKP]
12019
12094
+
Phe
GAA
[ENA]
¡û
>W1610734191
LMLN01000013
Alphaproteobacteria
Sphingomonas sp. Leaf62 [LMLN]
199970
200045
+
Phe
GAA
[ENA]
¡û
>W1610735324
LMMK01000044
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
14357
14432
+
Phe
GAA
[ENA]
¡û
>W1610735786
LMMU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
1610442
1610517
+
Phe
GAA
[ENA]
¡û
>W1610736058
LMMZ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
187790
187715
-
Phe
GAA
[ENA]
¡û
>W1610736295
LMNE01000073
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
136894
136969
+
Phe
GAA
[ENA]
¡û
>W1610736491
LMNJ01000005
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
89431
89356
-
Phe
GAA
[ENA]
¡û
>W1610736612
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
259456
259381
-
Phe
GAA
[ENA]
¡û
>W1610736703
LMNN01000022
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
521360
521285
-
Phe
GAA
[ENA]
¡û
>W1610736791
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
299397
299472
+
Phe
GAA
[ENA]
¡û
>W1610736841
LMNQ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
22533
22458
-
Phe
GAA
[ENA]
¡û
>W1610737018
LMNU01000039
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
995
920
-
Phe
GAA
[ENA]
¡û
>W1610752678
LNDS01000027
Alphaproteobacteria
Rhizobiales bacterium Ga0077525 [LNDS]
106824
106899
+
Phe
GAA
[ENA]
¡û
>W1610912028
LSHX01000025
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
729
804
+
Phe
GAA
[ENA]
¡û
>W1610913304
LSJC01000214
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
5650
5725
+
Phe
GAA
[ENA]
¡û
>W1610913305
LSJC01000214
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
4341
4266
-
Phe
GAA
[ENA]
¡û
>W1610914430
LSKD01000034
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
4341
4266
-
Phe
GAA
[ENA]
¡û
>W1610914598
LSKH01000073
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
7876
7801
-
Phe
GAA
[ENA]
¡û
>W1610914667
LSKI01000158
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
3952
3877
-
Phe
GAA
[ENA]
¡û
>W1610914904
LSKO01001061
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
3961
3886
-
Phe
GAA
[ENA]
¡û
>W1610914977
LSKP01000094
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
735
810
+
Phe
GAA
[ENA]
¡û
>W1710501496
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1765226
1765301
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK