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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.296941 (68 seq.)
>W1711178678
LWGY01000003
Bacillota
Christensenella minuta [LWGY]
73053
73128
+
Ala
TGC
[ENA]
¡û
>C005896
CP000141
Bacillota
Carboxydothermus hydrogenoformans Z-2901 [CP000141]
2112028
2111953
-
Ala
TGC
[Ensembl]
¡û
>WENV180295589
OBIZ01167315
[OBIZ] soil metagenome; soil
75
1
-
Ala
TGC
[ENA]
¢þ
>WENV180297682
OBJA01061895
[OBJA] soil metagenome; sediment, water from around vicinity
258
183
-
Ala
TGC
[ENA]
¢þ
>WENV180653275
OCVV010174312
[OCVV] gut metagenome; gut
7
82
+
Ala
TGC
[ENA]
¢þ
>WENV180653277
OCVV010174312
[OCVV] gut metagenome; gut
7
82
+
Ala
TGC
[ENA]
¢þ
>WENV180829226
ODKA01086629
[ODKA] human metagenome; G_DNA_Stool
120
195
+
Ala
TGC
[ENA]
¢þ
>WENV180970185
ODUU01001758
[ODUU] human metagenome; G_DNA_Stool
9080
9155
+
Ala
TGC
[ENA]
¢þ
>WENV181100235
OECI01156370
[OECI] human metagenome; G_DNA_Stool
155
80
-
Ala
TGC
[ENA]
¢þ
>WENV181134285
OEGF01053479
[OEGF] human metagenome; G_DNA_Stool
292
217
-
Ala
TGC
[ENA]
¢þ
>WENV181196468
OEQY01000012
[OEQY] metagenome; Caecal content
135118
135193
+
Ala
TGC
[ENA]
¢þ
>WENV181244287
OFFH01047369
[OFFH] mouse gut metagenome; faeces
152
227
+
Ala
TGC
[ENA]
¢þ
>WENV181271554
OFGF01060605
[OFGF] mouse gut metagenome; faeces
638
563
-
Ala
TGC
[ENA]
¢þ
>WENV181631484
OGMR01041492
[OGMR] metagenome; Human gut stool
69
144
+
Ala
TGC
[ENA]
¢þ
>WENV181662131
OGOG01017243
[OGOG] human gut metagenome; faeces
2240
2165
-
Ala
TGC
[ENA]
¢þ
>WENV181691061
OGOZ01001896
[OGOZ] human gut metagenome; faeces
1432
1357
-
Ala
TGC
[ENA]
¢þ
>WENV181967857
OGZV01034452
[OGZV] human gut metagenome; faeces
191
266
+
Ala
TGC
[ENA]
¢þ
>WENV182240529
OHSE01016516
[OHSE] human gut metagenome; feces
1145
1070
-
Ala
TGC
[ENA]
¢þ
>WENV182327380
OHYW01008631
[OHYW] human gut metagenome; feces
164
239
+
Ala
TGC
[ENA]
¢þ
>WENV182341252
OIAF01015579
[OIAF] human gut metagenome; feces
825
750
-
Ala
TGC
[ENA]
¢þ
>WENV182341284
OIAF01021539
[OIAF] human gut metagenome; feces
660
585
-
Ala
TGC
[ENA]
¢þ
>WENV182345505
OIAN01019944
[OIAN] human gut metagenome; feces
229
304
+
Ala
TGC
[ENA]
¢þ
>WENV182392604
OIEG01060194
[OIEG] human gut metagenome; human gut
456
381
-
Ala
TGC
[ENA]
¢þ
>WENV182538404
OIXH01100007
[OIXH] human gut metagenome; faeces
62
137
+
Ala
TGC
[ENA]
¢þ
>WENV182606532
OJJT01020962
[OJJT] metagenome; faeces
527
452
-
Ala
TGC
[ENA]
¢þ
>WENV182663527
OJMO01015612
[OJMO] human gut metagenome; feces
1859
1784
-
Ala
TGC
[ENA]
¢þ
>WENV182712874
OJPF01009087
[OJPF] human gut metagenome; stool sample
2007
1932
-
Ala
TGC
[ENA]
¢þ
>WENV182751504
OJRA01005247
[OJRA] human gut metagenome; stool sample
49
124
+
Ala
TGC
[ENA]
¢þ
>WENV182900312
OKST01028350
[OKST] human gut metagenome; feces
170
95
-
Ala
TGC
[ENA]
¢þ
>WENV182999961
OLCB01016486
[OLCB] human gut metagenome; human gut
42
117
+
Ala
TGC
[ENA]
¢þ
>WENV183232511
OLQU01018263
[OLQU] human gut metagenome; faeces
173
248
+
Ala
TGC
[ENA]
¢þ
>WENV183286626
OLSE01026961
[OLSE] human gut metagenome; faeces
182
257
+
Ala
TGC
[ENA]
¢þ
>WENV183296287
OLSL01026592
[OLSL] human gut metagenome; faeces
177
252
+
Ala
TGC
[ENA]
¢þ
>WENV183333058
OLWD01037120
[OLWD] human gut metagenome; feces
450
375
-
Ala
TGC
[ENA]
¢þ
>WENV183354387
OLXC01000130
[OLXC] human gut metagenome; feces
8021
7946
-
Ala
TGC
[ENA]
¢þ
>WENV183357715
OLXG01000441
[OLXG] human gut metagenome; feces
8654
8729
+
Ala
TGC
[ENA]
¢þ
>WENV183507379
OMGY01018246
[OMGY] human gut metagenome; human gut
261
336
+
Ala
TGC
[ENA]
¢þ
>WENV183518144
OMNQ01000104
[OMNQ] human gut metagenome; feces
8096
8021
-
Ala
TGC
[ENA]
¢þ
>WENV170003419
AGTN01329456
[AGTN] bioreactor metagenome; poplar biomass
649
724
+
Ala
TGC
[ENA]
¢þ
>WENV170004069
AGTN01550881
[AGTN] bioreactor metagenome; poplar biomass
170
95
-
Ala
TGC
[ENA]
¢þ
>WENV170006057
AMQJ01019457
[AMQJ] sediment metagenome; subsurface aquifer sediment
2279
2204
-
Ala
TGC
[ENA]
¢þ
>WENV170017341
BART01017667
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
684
759
+
Ala
TGC
[ENA]
¢þ
>WENV170017417
BART01027079
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
654
579
-
Ala
TGC
[ENA]
¢þ
>WENV170017514
BART01035065
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
135
210
+
Ala
TGC
[ENA]
¢þ
>WENV170021899
BBPG01004264
[BBPG] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
202
127
-
Ala
TGC
[ENA]
¢þ
>WENV170562166
CZCB01001230
[CZCB] anaerobic digester metagenome; anaerobic digester
2909
2834
-
Ala
TGC
[ENA]
¢þ
>WENV170562879
CZCB01006578
[CZCB] anaerobic digester metagenome; anaerobic digester
559
634
+
Ala
TGC
[ENA]
¢þ
>WENV170613366
FUWD012800104
[FUWD] metagenome; unknown
282
357
+
Ala
TGC
[ENA]
¢þ
>WENV170637918
JFBN01373681
[JFBN] chicken gut metagenome; ceca of Broiler chicken
86
161
+
Ala
TGC
[ENA]
¢þ
>WENV170684608
LFRM01048744
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3641
3566
-
Ala
TGC
[ENA]
¢þ
>WENV170688584
LFRM01251423
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2691
2616
-
Ala
TGC
[ENA]
¢þ
>WENV170784420
MCHG01005473
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
649
574
-
Ala
TGC
[ENA]
¢þ
>C181058745
CP022121
Bacillota
Dehalobacterium formicoaceticum DMC [CP022121]
1121724
1121799
+
Ala
TGC
-
¡û
>C181058768
CP022121
Bacillota
Dehalobacterium formicoaceticum DMC [CP022121]
3505445
3505370
-
Ala
TGC
-
¡û
>C191063472
CP029256
Bacillota
Christensenella minuta DSM 22607 [CP029256]
468243
468318
+
Ala
TGC
-
¡û
>C191063500
CP029256
Bacillota
Christensenella minuta DSM 22607 [CP029256]
1735431
1735356
-
Ala
TGC
-
¡û
>W09108841
ABTQ01000018
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
60876
60801
-
Ala
TGC
[ENA]
¡û
>W09108887
ABTQ01000155
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
2185
2260
+
Ala
TGC
[ENA]
¡û
>W1911661992
QFFZ01000174
Bacillota
Pelotomaculum propionicicum MGP [QFFZ]
315
390
+
Ala
TGC
[ENA]
¡û
>W1911662093
QFGB01000166
Bacillota
Pelotomaculum sp. FP [QFGB]
366
441
+
Ala
TGC
[ENA]
¡û
>SRA1032658
SRR035088.74255
454 Sequencing (SRP001809)
260
185
-
Ala
TGC
[SRA]
>C10104790
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
273242
273317
+
Ala
TGC
[Ensembl]
¡û
>C10104838
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
3754348
3754273
-
Ala
TGC
[Ensembl]
¡û
>W1610605767
LFSG01000036
Bacillota
Clostridiales bacterium DTU072 [LFSG]
2691
2616
-
Ala
TGC
[ENA]
¡û
>W1610986725
LWGY01000003
Bacillota
Christensenella minuta [LWGY]
73053
73128
+
Ala
TGC
[ENA]
¡û
>W1710083612
BDJL01000063
Bacillota
Carboxydothermus islandicus [BDJL]
204
129
-
Ala
TGC
[ENA]
¡û
>W1710605876
FWXI01000065
Bacillota
Sporomusa malonica [FWXI]
498
573
+
Ala
TGC
[ENA]
¡û
>W1710727054
LFSG01000036
Bacillota
Clostridiales bacterium DTU072 [LFSG]
2691
2616
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK