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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298641 (109 seq.)
>W1710889381
LNAM01000210
Bacillota
Acetivibrio ethanolgignens [LNAM]
219
293
+
Val
TAC
[ENA]
¡û
>W1710926323
LOEE01000041
Bacillota
Thermotalea metallivorans [LOEE]
58512
58437
-
Val
TAC
[ENA]
¡û
>W1710926330
LOEE01000049
Bacillota
Thermotalea metallivorans [LOEE]
13140
13065
-
Val
TAC
[ENA]
¡û
>W1710926356
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
666
741
+
Val
TAC
[ENA]
¡û
>W131231029
AUID01000001
Bacillota
Proteocatella sphenisci DSM 23131 [AUID]
168023
167948
-
Val
TAC
[ENA]
¡û
>WENV180297475
OBJA01034467
[OBJA] soil metagenome; sediment, water from around vicinity
779
854
+
Val
TAC
[ENA]
¡û
>WENV180541398
OCHR01124091
[OCHR] human gut metagenome; human gut
129
204
+
Val
TAC
[ENA]
¡û
>WENV180951755
ODUH01051107
[ODUH] human metagenome; G_DNA_Subgingival plaque
233
158
-
Val
TAC
[ENA]
¡û
>WENV181235754
OFEY01002541
[OFEY] mouse gut metagenome; faeces
9519
9593
+
Val
TAC
[ENA]
¡û
>WENV181236528
OFEZ01001800
[OFEZ] mouse gut metagenome; faeces
9418
9492
+
Val
TAC
[ENA]
¡û
>WENV181248439
OFFL01004066
[OFFL] mouse gut metagenome; faeces
4326
4400
+
Val
TAC
[ENA]
¡û
>WENV181257551
OFFU01001421
[OFFU] mouse gut metagenome; faeces
7554
7480
-
Val
TAC
[ENA]
¡û
>WENV181261929
OFFY01000688
[OFFY] mouse gut metagenome; faeces
32811
32885
+
Val
TAC
[ENA]
¡û
>WENV181268088
OFGD01000548
[OFGD] mouse gut metagenome; faeces
22438
22512
+
Val
TAC
[ENA]
¡û
>WENV181270660
OFGF01000518
[OFGF] mouse gut metagenome; faeces
32829
32903
+
Val
TAC
[ENA]
¡û
>WENV181273165
OFGH01000504
[OFGH] mouse gut metagenome; faeces
147
73
-
Val
TAC
[ENA]
¡û
>WENV181276205
OFGK01001002
[OFGK] mouse gut metagenome; faeces
17308
17382
+
Val
TAC
[ENA]
¡û
>WENV181278261
OFGM01000505
[OFGM] mouse gut metagenome; faeces
625
551
-
Val
TAC
[ENA]
¡û
>WENV181279149
OFGN01000112
[OFGN] mouse gut metagenome; faeces
13469
13395
-
Val
TAC
[ENA]
¡û
>WENV181283871
OFGQ01036579
[OFGQ] mouse gut metagenome; faeces
1064
1138
+
Val
TAC
[ENA]
¡û
>WENV181284508
OFGR01001699
[OFGR] mouse gut metagenome; faeces
1361
1435
+
Val
TAC
[ENA]
¡û
>WENV181289331
OFGZ01054386
[OFGZ] mouse gut metagenome; faeces
430
504
+
Val
TAC
[ENA]
¡û
>WENV182117684
OHJE01023930
[OHJE] human gut metagenome; feces
546
621
+
Val
TAC
[ENA]
¡û
>WENV182626405
OJKP01009236
[OJKP] metagenome; faeces
339
264
-
Val
TAC
[ENA]
¡û
>WENV183600890
OODJ01000041
[OODJ] human gut metagenome; human gut
73517
73592
+
Val
TAC
[ENA]
¡û
>WENV183648835
OQVS01044875
[OQVS] human gut metagenome; human gut
143
68
-
Val
TAC
[ENA]
¡û
>WENV183705980
PDWI01002811
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
25341
25266
-
Val
TAC
[ENA]
¡û
>WENV183708688
PDWI01018821
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6682
6607
-
Val
TAC
[ENA]
¡û
>WENV183712530
PDWI01103447
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1900
1975
+
Val
TAC
[ENA]
¡û
>WENV183719218
PDWJ01010849
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6040
5965
-
Val
TAC
[ENA]
¡û
>WENV183746759
PPCM01000005
[PPCM] marine sediment metagenome; marine sediment
332002
331927
-
Val
TAC
[ENA]
¡û
>WENV170019365
BBPD01009241
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1716
1641
-
Val
TAC
[ENA]
¡û
>WENV170019841
BBPE01000969
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
407
332
-
Val
TAC
[ENA]
¡û
>WENV170022038
BBPG01010659
[BBPG] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3239
3314
+
Val
TAC
[ENA]
¡û
>WENV170562181
CZCB01001319
[CZCB] anaerobic digester metagenome; anaerobic digester
105892
105817
-
Val
TAC
[ENA]
¡û
>WENV170562285
CZCB01001879
[CZCB] anaerobic digester metagenome; anaerobic digester
13835
13910
+
Val
TAC
[ENA]
¡û
>WENV170609571
FUWD011435739
[FUWD] metagenome; unknown
76
1
-
Val
TAC
[ENA]
¡û
>WENV170658810
JUEG02000672
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
24752
24827
+
Val
TAC
[ENA]
¡û
>WENV170675070
LCWZ01003411
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
1580
1505
-
Val
TAC
[ENA]
¡û
>WENV170675119
LCWZ01007443
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
12
87
+
Val
TAC
[ENA]
¡û
>WENV170675172
LCWZ01011728
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
583
508
-
Val
TAC
[ENA]
¡û
>WENV170675207
LCWZ01015868
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
529
604
+
Val
TAC
[ENA]
¡û
>WENV170675229
LCWZ01018657
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
479
554
+
Val
TAC
[ENA]
¡û
>WENV170675339
LCWZ01042818
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
266
191
-
Val
TAC
[ENA]
¡û
>WENV170691102
LFRM01380412
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
105910
105835
-
Val
TAC
[ENA]
¡û
>WENV170691626
LFRM01407034
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
22582
22657
+
Val
TAC
[ENA]
¡û
>WENV170717022
LSQX01020667
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2155
2080
-
Val
TAC
[ENA]
¡û
>W1910548221
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
186567
186492
-
Val
TAC
[ENA]
¡û
>W1910548258
FZOJ01000036
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
180
255
+
Val
TAC
[ENA]
¡û
>W1910548269
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
267
342
+
Val
TAC
[ENA]
¡û
>W2010335649
CACYPX010000175
Bacillota
Ruminococcaceae bacterium [CACYPX]
3791
3716
-
Val
TAC
[ENA]
¡û
>W2010338170
CACZOB010000138
Bacillota
Ruminococcaceae bacterium [CACZOB]
164
89
-
Val
TAC
[ENA]
¡û
>W2010342335
CADAVA010000076
Bacillota
Ruminococcaceae bacterium [CADAVA]
453
378
-
Val
TAC
[ENA]
¡û
>W2010344000
CADBJA010000019
Bacillota
Ruminococcaceae bacterium [CADBJA]
18806
18731
-
Val
TAC
[ENA]
¡û
>W2010347435
CADCRR010000002
Bacillota
Ruminococcaceae bacterium [CADCRR]
21901
21826
-
Val
TAC
[ENA]
¡û
>W2010429982
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
186567
186492
-
Val
TAC
[ENA]
¡û
>W2010430019
FZOJ01000036
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
180
255
+
Val
TAC
[ENA]
¡û
>W2010430030
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
267
342
+
Val
TAC
[ENA]
¡û
>W2010596101
JABEYB010000004
Bacillota
Clostridium estertheticum CEST001 [JABEYB]
244737
244812
+
Val
TAC
[ENA]
¡û
>W2010698743
JACHEN010000020
Bacillota
Anaerosolibacter carboniphilus DSM 103526 [JACHEN]
88046
87971
-
Val
TAC
[ENA]
¡û
>W2010698759
JACHEN010000028
Bacillota
Anaerosolibacter carboniphilus DSM 103526 [JACHEN]
1167
1092
-
Val
TAC
[ENA]
¡û
>W2010698772
JACHEN010000034
Bacillota
Anaerosolibacter carboniphilus DSM 103526 [JACHEN]
58382
58307
-
Val
TAC
[ENA]
¡û
>W2010698783
JACHEN010000035
Bacillota
Anaerosolibacter carboniphilus DSM 103526 [JACHEN]
45709
45634
-
Val
TAC
[ENA]
¡û
>W2010698792
JACHEN010000040
Bacillota
Anaerosolibacter carboniphilus DSM 103526 [JACHEN]
349
424
+
Val
TAC
[ENA]
¡û
>W2011674605
SPSE01000042
Bacillota
Clostridium estertheticum MA41 [SPSE]
106381
106306
-
Val
TAC
[ENA]
¡û
>W2011674662
SPSF01000041
Bacillota
Clostridium estertheticum MA19 [SPSF]
106381
106306
-
Val
TAC
[ENA]
¡û
>W2011697032
SUMG01000030
Bacillota
Isachenkonia alkalipeptolytica Z-1701 [SUMG]
17437
17362
-
Val
TAC
[ENA]
¡û
>W2011697038
SUMG01000047
Bacillota
Isachenkonia alkalipeptolytica Z-1701 [SUMG]
3271
3196
-
Val
TAC
[ENA]
¡û
>W2011697053
SUMG01000047
Bacillota
Isachenkonia alkalipeptolytica Z-1701 [SUMG]
1637
1562
-
Val
TAC
[ENA]
¡û
>W2110247828
JACRSS010000004
Bacillota
Christensenellaceae bacterium NSJ-63 [JACRSS]
11694
11769
+
Val
TAC
[ENA]
¡û
>W2110615422
JAHLDM010000011
Bacillota
Clostridium estertheticum CF002 [JAHLDM]
66756
66681
-
Val
TAC
[ENA]
¡û
>W2110615645
JAHLDP010000015
Bacillota
Clostridium estertheticum CF009 [JAHLDP]
84400
84325
-
Val
TAC
[ENA]
¡û
>W2110615711
JAHLDQ010000007
Bacillota
Clostridium estertheticum CF010 [JAHLDQ]
110336
110411
+
Val
TAC
[ENA]
¡û
>W2110615933
JAHLDT010000004
Bacillota
Clostridium estertheticum CM020 [JAHLDT]
332659
332734
+
Val
TAC
[ENA]
¡û
>W2110616036
JAHLDU010000009
Bacillota
Clostridium sp. DSM 17811 [JAHLDU]
45494
45419
-
Val
TAC
[ENA]
¡û
>W2110616093
JAHLDV010000001
Bacillota
Clostridium frigoris DSM 14204 [JAHLDV]
2353
2278
-
Val
TAC
[ENA]
¡û
>W2110622280
JAHLQC010000002
Bacillota
Falcatimonas sp. MSJ-15 [JAHLQC]
96795
96721
-
Val
TAC
[ENA]
¡û
>W2110622300
JAHLQC010000010
Bacillota
Falcatimonas sp. MSJ-15 [JAHLQC]
147962
147888
-
Val
TAC
[ENA]
¡û
>W2110622334
JAHLQC010000057
Bacillota
Falcatimonas sp. MSJ-15 [JAHLQC]
722
796
+
Val
TAC
[ENA]
¡û
>W2110668933
JAICDZ010000003
Bacillota
Clostridium estertheticum CF001 [JAICDZ]
231103
231178
+
Val
TAC
[ENA]
¡û
>W2110672365
JAIFTF010000005
Bacillota
Clostridium estertheticum CF005 [JAIFTF]
91651
91726
+
Val
TAC
[ENA]
¡û
>W2110715315
JAIZZW010000015
Bacillota
Clostridium estertheticum CM033 [JAIZZW]
102089
102014
-
Val
TAC
[ENA]
¡û
>W2110715395
JAIZZX010000012
Bacillota
Clostridium estertheticum CM032 [JAIZZX]
102089
102014
-
Val
TAC
[ENA]
¡û
>W2110715540
JAIZZZ010000017
Bacillota
Clostridium estertheticum CF015 [JAIZZZ]
27298
27373
+
Val
TAC
[ENA]
¡û
>C211363071
CP078093
Bacillota
Crassaminicella sp. 143-21 [CP078093]
1223560
1223635
+
Val
TAC
-
¡û
>C211363089
CP078093
Bacillota
Crassaminicella sp. 143-21 [CP078093]
550904
550829
-
Val
TAC
-
¡û
>C211363102
CP078093
Bacillota
Crassaminicella sp. 143-21 [CP078093]
545002
544927
-
Val
TAC
-
¡û
>C211363116
CP078093
Bacillota
Crassaminicella sp. 143-21 [CP078093]
320904
320829
-
Val
TAC
-
¡û
>C211363137
CP078093
Bacillota
Crassaminicella sp. 143-21 [CP078093]
79273
79198
-
Val
TAC
-
¡û
>C211363153
CP078093
Bacillota
Crassaminicella sp. 143-21 [CP078093]
77850
77775
-
Val
TAC
-
¡û
>C211363169
CP078093
Bacillota
Crassaminicella sp. 143-21 [CP078093]
69732
69657
-
Val
TAC
-
¡û
>C211395082
CP082326
Bacillota
Crassaminicella profunda Ra1766H [CP082326]
1098655
1098730
+
Val
TAC
-
¡û
>C231234496
CP087098
Bacillota
Clostridium estertheticum CEST001 [CP087098]
4148406
4148331
-
Val
TAC
-
¡û
>C241181600
CP077610
Bacillota
Clostridium estertheticum CF005 [CP077610]
3419518
3419443
-
Val
TAC
-
¡û
>C241181660
CP077615
Bacillota
Clostridium estertheticum CF001 [CP077615]
4266674
4266599
-
Val
TAC
-
¡û
>C241181774
CP077618
Bacillota
Clostridium estertheticum CF007 [CP077618]
105777
105702
-
Val
TAC
-
¡û
>C241181943
CP077628
Bacillota
Clostridium estertheticum CF004 [CP077628]
2744254
2744179
-
Val
TAC
-
¡û
>W1510725340
CXYX01000012
Bacillota
Inediibacterium massiliense mt12 [CXYX]
2460
2535
+
Val
TAC
[ENA]
¡û
>W1510725381
CXYX01000015
Bacillota
Inediibacterium massiliense mt12 [CXYX]
1637795
1637720
-
Val
TAC
[ENA]
¡û
>W1610606669
LFTC01000079
Bacillota
Clostridiales bacterium DTU083 [LFTC]
105910
105835
-
Val
TAC
[ENA]
¡û
>W1610606677
LFTC01000083
Bacillota
Clostridiales bacterium DTU083 [LFTC]
22582
22657
+
Val
TAC
[ENA]
¡û
>W1610749759
LNAM01000210
Bacillota
Acetivibrio ethanolgignens [LNAM]
219
293
+
Val
TAC
[ENA]
¡û
>W1610783816
LOEE01000041
Bacillota
Thermotalea metallivorans [LOEE]
58512
58437
-
Val
TAC
[ENA]
¡û
>W1610783823
LOEE01000049
Bacillota
Thermotalea metallivorans [LOEE]
13140
13065
-
Val
TAC
[ENA]
¡û
>W1610783849
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
666
741
+
Val
TAC
[ENA]
¡û
>W1710586846
FQXM01000046
Bacillota
Clostridium grantii DSM 8605 [FQXM]
11209
11284
+
Val
TAC
[ENA]
¡û
>W1710594525
FSRH01000013
Bacillota
Peptoclostridium litorale DSM 5388 [FSRH]
61065
60990
-
Val
TAC
[ENA]
¡û
>W1710727956
LFTC01000079
Bacillota
Clostridiales bacterium DTU083 [LFTC]
105910
105835
-
Val
TAC
[ENA]
¡û
>W1710727964
LFTC01000083
Bacillota
Clostridiales bacterium DTU083 [LFTC]
22582
22657
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK