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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307335 (44 seq.)
>W1711128957
LUTR01000002
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
234463
234388
-
Thr
TGT
[ENA]
¡û
>W1711128981
LUTR01000012
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
79998
79923
-
Thr
TGT
[ENA]
¡û
>W1711129033
LUTS01000003
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
111833
111908
+
Thr
TGT
[ENA]
¡û
>W1711129045
LUTS01000005
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
202160
202235
+
Thr
TGT
[ENA]
¡û
>W1711509640
MKZT01000008
Gammaproteobacteria
Kushneria phosphatilytica YCWA18 [MKZT]
19442
19517
+
Thr
TGT
[ENA]
¡û
>W131175726
ARJM01000047
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
136750
136825
+
Thr
TGT
[ENA]
¡û
>W131222107
AUAZ01000056
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
1198
1123
-
Thr
TGT
[ENA]
¡û
>WENV180042591
LQAF01010102
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
314
389
+
Thr
TGT
[ENA]
¡û
>WENV182541147
OJAS01000062
[OJAS] seawater metagenome; Sea water
5865
5940
+
Thr
TGT
[ENA]
¡û
>W141279767
JAGO01000004
Gammaproteobacteria
Carnimonas nigrificans ATCC BAA-78 [JAGO]
26888
26813
-
Thr
TGT
[ENA]
¡û
>WENV183057565
OLHL01010287
[OLHL] seawater metagenome; Sea water
672
747
+
Thr
TGT
[ENA]
¡û
>WENV170015859
AZIJ01001928
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
493
418
-
Thr
TGT
[ENA]
¡û
>WENV170016395
AZIK01002829
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
794
869
+
Thr
TGT
[ENA]
¡û
>WENV170112003
CEGC01000729
[CEGC] microbial mat metagenome; grass silage
1463
1388
-
Thr
TGT
[ENA]
¡û
>WENV170112327
CEGE01001775
[CEGE] microbial mat metagenome; grass silage
470
395
-
Thr
TGT
[ENA]
¡û
>WENV170112624
CEGF01007486
[CEGF] microbial mat metagenome; grass silage
348
273
-
Thr
TGT
[ENA]
¡û
>WENV170263210
CERC01026653
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5675
5750
+
Thr
TGT
[ENA]
¡û
>WENV170264975
CERD01094021
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
214
289
+
Thr
TGT
[ENA]
¡û
>WENV170655536
JTFN01042465
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
36
111
+
Thr
TGT
[ENA]
¡û
>WENV170657292
JTFO01119480
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
15
90
+
Thr
TGT
[ENA]
¡û
>WENV170657514
JTFO01175916
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
185
110
-
Thr
TGT
[ENA]
¡û
>WENV170657526
JTFO01179465
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
191
116
-
Thr
TGT
[ENA]
¡û
>WENV170658284
JTFP01080934
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1524
1599
+
Thr
TGT
[ENA]
¡û
>WENV170948603
MEHZ011236526
[MEHZ] marine metagenome; marine surface water
76
1
-
Thr
TGT
[ENA]
¡û
>WENV170958129
MKWU01000544
[MKWU] sponge metagenome;
57625
57700
+
Thr
TGT
[ENA]
¡û
>W2010683104
JACEMT010000038
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
1626
1551
-
Thr
TGT
[ENA]
¡û
>W2011373818
RBIN01000011
Gammaproteobacteria
Kushneria sinocarnis DSM 23229 [RBIN]
19814
19889
+
Thr
TGT
[ENA]
¡û
>W2011633662
SMFU01000009
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
463302
463227
-
Thr
TGT
[ENA]
¡û
>W2110639297
JAHQZT010000014
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
75581
75656
+
Thr
TGT
[ENA]
¡û
>W2110640676
JAHREP010000007
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
189333
189408
+
Thr
TGT
[ENA]
¡û
>C211032068
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
242490
242565
+
Thr
TGT
-
¡û
>C231019816
AP025763
Gammaproteobacteria
Neptuniibacter sp. PT1 [AP025763]
228228
228303
+
Thr
TGT
-
¡û
>C231019860
AP025763
Gammaproteobacteria
Neptuniibacter sp. PT1 [AP025763]
3663139
3663064
-
Thr
TGT
-
¡û
>C231313099
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
3353132
3353057
-
Thr
TGT
-
¡û
>C241087463
CP044222
Gammaproteobacteria
Nitrincola iocasae KXZD1103 [CP044222]
232377
232452
+
Thr
TGT
-
¡û
>W1511349198
JRLB01000110
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
17126
17051
-
Thr
TGT
[ENA]
¡û
>W11170382
AFPL01000004
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
86544
86619
+
Thr
TGT
[ENA]
¡û
>W1610940030
LUTR01000002
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
234463
234388
-
Thr
TGT
[ENA]
¡û
>W1610940054
LUTR01000012
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
79998
79923
-
Thr
TGT
[ENA]
¡û
>W1610940106
LUTS01000003
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
111833
111908
+
Thr
TGT
[ENA]
¡û
>W1610940118
LUTS01000005
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
202160
202235
+
Thr
TGT
[ENA]
¡û
>W1710533758
FNRJ01000007
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
93312
93387
+
Thr
TGT
[ENA]
¡û
>W1710539748
FNVQ01000004
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
304196
304121
-
Thr
TGT
[ENA]
¡û
>W1710596403
FTMN01000009
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
132055
131980
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK