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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308813 (54 seq.)
>W1710821623
LKTU01000015
Betaproteobacteria
Variovorax paradoxus [LKTU]
74436
74511
+
Val
TAC
[ENA]
¡û
>W1710821685
LKTV01000032
Betaproteobacteria
Variovorax paradoxus [LKTV]
7391
7466
+
Val
TAC
[ENA]
¡û
>W1710821782
LKTX01000018
Betaproteobacteria
Variovorax paradoxus [LKTX]
7370
7445
+
Val
TAC
[ENA]
¡û
>W1710821826
LKTY01000008
Betaproteobacteria
Variovorax paradoxus [LKTY]
41881
41956
+
Val
TAC
[ENA]
¡û
>W1710954145
LOWY01000016
Betaproteobacteria
Burkholderia sp. FL-7-2-10-S1-D7 [LOWY]
94772
94847
+
Val
TAC
[ENA]
¡û
>C171067041
CP017751
Betaproteobacteria
Cupriavidus sp. USMAHM13 [CP017751, CP017752]
2606085
2606010
-
Val
TAC
-
¡û
>C171067120
CP017754
Betaproteobacteria
Cupriavidus malaysiensis USMAA1020 [CP017754, CP017755]
2655408
2655333
-
Val
TAC
-
¡û
>WENV180019606
FTCD01000598
[FTCD] metagenome; soil
2213
2138
-
Val
TAC
[ENA]
¢þ
>WENV181307953
OFIS01000058
[OFIS] sludge metagenome; sludge
31741
31816
+
Val
TAC
[ENA]
¢þ
>WENV181364819
OFPD01003835
[OFPD] sediment metagenome; Lake sediment
582
507
-
Val
TAC
[ENA]
¢þ
>WENV183744443
PJUK01029656
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
52
127
+
Val
TAC
[ENA]
¢þ
>WENV170559668
CXWL01136024
[CXWL] groundwater metagenome; biofilm material
913
838
-
Val
TAC
[ENA]
¢þ
>WENV171003791
NNBV01000827
[NNBV] plant metagenome; symbiotic tissue sample KVS11
14890
14815
-
Val
TAC
[ENA]
¢þ
>C181103515
CP024645
Betaproteobacteria
Piscinibacter gummiphilus NBRC 109400 [CP024645]
3687854
3687779
-
Val
TAC
-
¡û
>C181159364
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
78613
78688
+
Val
TAC
-
¡û
>C191164557
CP039287
Betaproteobacteria
Cupriavidus necator H16 [CP039287, CP039288]
1612803
1612878
+
Val
TAC
-
¡û
>W141818189
JQLI01000008
Betaproteobacteria
Cupriavidus necator A5-1 [JQLI]
1905738
1905813
+
Val
TAC
[ENA]
¡û
>W1910856344
NBTA01000023
Betaproteobacteria
Pandoraea apista Pa16226 [NBTA]
409408
409333
-
Val
TAC
[ENA]
¡û
>W1911518876
OFTC01000002
Betaproteobacteria
Cupriavidus neocaledonicus taiwanensis [OFTC]
61431
61506
+
Val
TAC
[ENA]
¡û
>W1911519162
OFTH01000008
Betaproteobacteria
Cupriavidus taiwanensis [OFTH]
30952
31027
+
Val
TAC
[ENA]
¡û
>W1911519210
OFTI01000006
Betaproteobacteria
Cupriavidus taiwanensis [OFTI]
60660
60735
+
Val
TAC
[ENA]
¡û
>W1911519434
OFTM01000004
Betaproteobacteria
Cupriavidus taiwanensis [OFTM]
30951
31026
+
Val
TAC
[ENA]
¡û
>W1810046165
NNBQ01000002
Betaproteobacteria
Variovorax sp. B4 [NNBQ]
523755
523830
+
Val
TAC
[ENA]
¡û
>W1810046262
NNBR01000002
Betaproteobacteria
Variovorax sp. B2 [NNBR]
523767
523842
+
Val
TAC
[ENA]
¡û
>W1810089038
PGEK01000023
Betaproteobacteria
Castellaniella caeni CD04 [PGEK]
680
605
-
Val
TAC
[ENA]
¡û
>W1810392067
PXZZ01000065
Betaproteobacteria
Variovorax sp. WS11 [PXZZ]
11259
11184
-
Val
TAC
[ENA]
¡û
>W1810577511
QEOH01000002
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
57567
57492
-
Val
TAC
[ENA]
¡û
>W1810580243
QETA01000001
Betaproteobacteria
Corticimicrobacter populi 3d-2-2 [QETA]
255126
255201
+
Val
TAC
[ENA]
¡û
>W1810672025
QJTC01000010
Betaproteobacteria
Xylophilus ampelinus CECT 7646 [QJTC]
87142
87067
-
Val
TAC
[ENA]
¡û
>W1810672526
QJTM01000003
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
267524
267599
+
Val
TAC
[ENA]
¡û
>W1810682472
QKUE01000004
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
267524
267599
+
Val
TAC
[ENA]
¡û
>SRA1015559
SRR023846.111361
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
174
99
-
Val
TAC
[SRA]
>C151101361
HG916765
Betaproteobacteria
Castellaniella defragrans 65Phen [HG916765]
1609058
1608983
-
Val
TAC
[Ensembl]
¡û
>C11123576
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
2164694
2164769
+
Val
TAC
[Ensembl]
¡û
>W1511554993
JZWI01000012
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
88755
88830
+
Val
TAC
[ENA]
¡û
>C161073168
CP014517
Betaproteobacteria
Variovorax sp. PAMC 28711 [CP014517]
3488397
3488472
+
Val
TAC
[Ensembl]
¡û
>W1610047757
BBDP01000548
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
580
655
+
Val
TAC
[ENA]
¡û
>W1610072194
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
818093
818018
-
Val
TAC
[ENA]
¡û
>W1610074249
BCWN01000003
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
57606
57681
+
Val
TAC
[ENA]
¡û
>W1610685585
LKTU01000015
Betaproteobacteria
Variovorax paradoxus [LKTU]
74436
74511
+
Val
TAC
[ENA]
¡û
>W1610685647
LKTV01000032
Betaproteobacteria
Variovorax paradoxus [LKTV]
7391
7466
+
Val
TAC
[ENA]
¡û
>W1610685744
LKTX01000018
Betaproteobacteria
Variovorax paradoxus [LKTX]
7370
7445
+
Val
TAC
[ENA]
¡û
>W1610685788
LKTY01000008
Betaproteobacteria
Variovorax paradoxus [LKTY]
41881
41956
+
Val
TAC
[ENA]
¡û
>W1610810255
LOWY01000016
Betaproteobacteria
Burkholderia sp. FL-7-2-10-S1-D7 [LOWY]
94772
94847
+
Val
TAC
[ENA]
¡û
>W1710044267
BBDP01000548
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
580
655
+
Val
TAC
[ENA]
¡û
>W1710069396
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
818093
818018
-
Val
TAC
[ENA]
¡û
>W1710071367
BCWN01000003
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
57606
57681
+
Val
TAC
[ENA]
¡û
>W1710506171
FMUJ01000001
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
530313
530388
+
Val
TAC
[ENA]
¡û
>W1710531375
FNPM01000007
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
252252
252327
+
Val
TAC
[ENA]
¡û
>W1710542690
FNZJ01000001
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
1367006
1367081
+
Val
TAC
[ENA]
¡û
>W1710545311
FOBJ01000010
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
209098
209023
-
Val
TAC
[ENA]
¡û
>W1710558129
FOLP01000001
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
1367006
1367081
+
Val
TAC
[ENA]
¡û
>W1710571864
FOWG01000003
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
444059
443984
-
Val
TAC
[ENA]
¡û
>W1710572114
FOWL01000002
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
748693
748768
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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