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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31286 (79 seq.)
>W1710797162
LJSU01000024
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
519
430
-
Ser
GGA
[ENA]
¡û
>W1710806537
LKBA01000019
Alphaproteobacteria
Aliiroseovarius crassostreae [LKBA]
225322
225411
+
Ser
GGA
[ENA]
¡û
>W1711385819
MEES01000002
Alphaproteobacteria
Paracoccus sp. SCN 68-21 [MEES]
708
619
-
Ser
GGA
[ENA]
¡û
>W1711642856
MPZQ01000014
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
14798
14887
+
Ser
GGA
[ENA]
¡û
>W1711642899
MPZR01000011
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
14796
14885
+
Ser
GGA
[ENA]
¡û
>W1711642973
MPZT01000003
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
634727
634638
-
Ser
GGA
[ENA]
¡û
>W1711643015
MPZU01000002
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
682813
682724
-
Ser
GGA
[ENA]
¡û
>W1711643069
MPZV01000003
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
14798
14887
+
Ser
GGA
[ENA]
¡û
>W1711643165
MPZX01000003
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
604516
604427
-
Ser
GGA
[ENA]
¡û
>W1711695329
MSIT01000011
Alphaproteobacteria
Salibaculum halophilum WDS1C4 [MSIT]
28356
28445
+
Ser
GGA
[ENA]
¡û
>W1711947191
NBNX01000001
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
738098
738009
-
Ser
GGA
[ENA]
¡û
>W1711947242
NBNY01000001
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
738873
738784
-
Ser
GGA
[ENA]
¡û
>W1711947296
NBNZ01000003
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
55854
55943
+
Ser
GGA
[ENA]
¡û
>W1711959000
NBXF01000006
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
110486
110575
+
Ser
GGA
[ENA]
¡û
>W131058661
ANFS01000044
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
88210
88121
-
Ser
GGA
[ENA]
¡û
>W131216070
ATVN01000009
Alphaproteobacteria
Pseudorhodobacter ferrugineus DSM 5888 [ATVN]
149301
149390
+
Ser
GGA
[ENA]
¡û
>C171037005
CP015210
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
1942458
1942369
-
Ser
GGA
-
¡û
>C171094346
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
2031574
2031663
+
Ser
GGA
-
¡û
>C171108651
CP020474
Alphaproteobacteria
Roseovarius mucosus SMR3 [CP020474]
88469
88558
+
Ser
GGA
-
¡û
>C019277
CP000661
Alphaproteobacteria
Cereibacter sphaeroides [CP000661]
1850753
1850842
+
Ser
GGA
[Ensembl]
¡û
>WENV180232712
OBCP01000001
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
505711
505622
-
Ser
GGA
[ENA]
¢þ
>WENV180569513
OCLR01000122
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
98341
98252
-
Ser
GGA
[ENA]
¢þ
>WENV180571095
OCLT01000002
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
263484
263395
-
Ser
GGA
[ENA]
¢þ
>WENV180585667
OCOL01056698
[OCOL] marine metagenome; ENVO:00002010
105
16
-
Ser
GGA
[ENA]
¢þ
>WENV180589565
OCOS01000237
[OCOS] marine metagenome; Sterile flask
39
128
+
Ser
GGA
[ENA]
¢þ
>WENV180639421
OCRL01000002
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
263484
263395
-
Ser
GGA
[ENA]
¢þ
>WENV180640324
OCRM01000001
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
505711
505622
-
Ser
GGA
[ENA]
¢þ
>W141063313
APGJ01000004
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [APGJ]
365031
365120
+
Ser
GGA
[ENA]
¡û
>W141230432
BATB01000015
Alphaproteobacteria
Limimaricola cinnabarinus LL-001 [BATB]
18255
18344
+
Ser
GGA
[ENA]
¡û
>W141278716
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
3028905
3028994
+
Ser
GGA
[ENA]
¡û
>WENV183726985
PJTO01001273
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
3401
3490
+
Ser
GGA
[ENA]
¢þ
>WENV183728301
PJTQ01000011
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
4005
3916
-
Ser
GGA
[ENA]
¢þ
>WENV183729864
PJTR01000138
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
48743
48832
+
Ser
GGA
[ENA]
¢þ
>WENV183733992
PJTZ01000014
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
307983
307894
-
Ser
GGA
[ENA]
¢þ
>WENV183736891
PJUD01000084
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
3776
3865
+
Ser
GGA
[ENA]
¢þ
>WENV183739721
PJUF01000002
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
321522
321433
-
Ser
GGA
[ENA]
¢þ
>WENV183743639
PJUJ01013165
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
186
275
+
Ser
GGA
[ENA]
¢þ
>WENV170485456
CEVN01107228
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
993
1082
+
Ser
GGA
[ENA]
¢þ
>WENV170704947
LLEO01000013
[LLEO] bioreactor metagenome; day35 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
23915
23826
-
Ser
GGA
[ENA]
¢þ
>WENV170813530
MDSW01201538
[MDSW] marine metagenome; seawater
2692
2603
-
Ser
GGA
[ENA]
¢þ
>PL191001397
CP039965
Alphaproteobacteria
Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965)
1249356
1249445
+
Ser
GGA
[ENA]
¡û
>C181017236
CP015287
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
1942445
1942356
-
Ser
GGA
-
¡û
>C181191121
CP030271
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
1942465
1942376
-
Ser
GGA
-
¡û
>C181194171
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
2281676
2281765
+
Ser
GGA
-
¡û
>W09104750
AAME01000075
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
1407
1318
-
Ser
GGA
[ENA]
¡û
>W09104770
AAMF01000002
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
706961
707050
+
Ser
GGA
[ENA]
¡û
>W1910443290
FWFY01000003
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
395336
395425
+
Ser
GGA
[ENA]
¡û
>W1911189707
NQWH01000010
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
122832
122743
-
Ser
GGA
[ENA]
¡û
>W1911491944
OAOQ01000026
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
731
820
+
Ser
GGA
[ENA]
¡û
>W1911538395
OMOI01000001
Alphaproteobacteria
Aliiroseovarius pelagivivens CECT 8811 [OMOI]
1077924
1078013
+
Ser
GGA
[ENA]
¡û
>W1911705518
QOKZ01000005
Alphaproteobacteria
Paracoccus alkanivorans 4·î2Æü [QOKZ]
312886
312797
-
Ser
GGA
[ENA]
¡û
>W1911749446
QWGP01000007
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
2570
2481
-
Ser
GGA
[ENA]
¡û
>W1911813198
QZEV01000039
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
13365
13454
+
Ser
GGA
[ENA]
¡û
>W1810119966
PHSI01000099
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
1581
1492
-
Ser
GGA
[ENA]
¡û
>W1810385269
PXNQ01000008
Alphaproteobacteria
Paracoccus methylarcula VKM B-2159 [PXNQ]
141210
141299
+
Ser
GGA
[ENA]
¡û
>W1810426035
PYVW01000004
Alphaproteobacteria
Devosia naphthalenivorans CM5-1 [PYVW]
153574
153485
-
Ser
GGA
[ENA]
¡û
>W1810445048
PZKG01000115
Alphaproteobacteria
Cereibacter changlensis JA139 [PZKG]
7874
7963
+
Ser
GGA
[ENA]
¡û
>W1810463821
PZZW01000002
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
584274
584185
-
Ser
GGA
[ENA]
¡û
>W1810543605
QDKM01000007
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
3401
3312
-
Ser
GGA
[ENA]
¡û
>W1810583969
QEYD01000002
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
11258
11169
-
Ser
GGA
[ENA]
¡û
>W1810684480
QKYL01000045
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
46002
46091
+
Ser
GGA
[ENA]
¡û
>W1810686012
QKZS01000019
Alphaproteobacteria
Cereibacter changlensis DSM 18774 [QKZS]
5424
5335
-
Ser
GGA
[ENA]
¡û
>W1810692294
QLIW01000005
Alphaproteobacteria
Rhodobacteraceae bacterium AsT-22 [QLIW]
1331
1242
-
Ser
GGA
[ENA]
¡û
>W1810694733
QLMG01000013
Alphaproteobacteria
Salipiger aestuarii DSM 22011 [QLMG]
1144
1055
-
Ser
GGA
[ENA]
¡û
>W1810699115
QMCC01000008
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
677278
677189
-
Ser
GGA
[ENA]
¡û
>W1810913136
QVMW01000013
Alphaproteobacteria
Rhodobacteraceae bacterium 63075 [QVMW]
2801
2712
-
Ser
GGA
[ENA]
¡û
>W1511698358
LGHS01000020
Alphaproteobacteria
Pseudorhodobacter aquimaris KCTC 23043 [LGHS]
58947
59036
+
Ser
GGA
[ENA]
¡û
>W11160188
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
1347068
1346979
-
Ser
GGA
[ENA]
¡û
>W121076789
AKBU01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
2964397
2964308
-
Ser
GGA
[ENA]
¡û
>W1610014802
AONH01000018
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
86471
86560
+
Ser
GGA
[ENA]
¡û
>W1610661119
LJSU01000024
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
519
430
-
Ser
GGA
[ENA]
¡û
>W1610670311
LKBA01000019
Alphaproteobacteria
Aliiroseovarius crassostreae [LKBA]
225322
225411
+
Ser
GGA
[ENA]
¡û
>W1710011693
AONH01000018
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
86471
86560
+
Ser
GGA
[ENA]
¡û
>W1710514210
FNAT01000005
Alphaproteobacteria
Limimaricola pyoseonensis [FNAT]
49438
49349
-
Ser
GGA
[ENA]
¡û
>W1710540935
FNXG01000001
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
131688
131599
-
Ser
GGA
[ENA]
¡û
>W1710547694
FODE01000020
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
58437
58526
+
Ser
GGA
[ENA]
¡û
>W1710553406
FOHO01000007
Alphaproteobacteria
Paracoccus homiensis [FOHO]
98700
98789
+
Ser
GGA
[ENA]
¡û
>W1710592381
FRCK01000005
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
97199
97288
+
Ser
GGA
[ENA]
¡û
>W1710599541
FTOU01000008
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
102032
101943
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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