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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3346 (15 seq.)
>W1711335845
MBRE01000051
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
71507
71602
+
Ser
GCT
[ENA]
¡û
>C025511
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
643469
643560
+
Ser
GCT
[Ensembl]
¡û
>WENV180012896
FMSI01028462
[FMSI] soil metagenome; Soil
16306
16397
+
Ser
GCT
[ENA]
¢þ
>W141038164
ALVI01000050
Cyanobacteriota
Kamptonema formosum PCC 6407 [ALVI]
225570
225479
-
Ser
GCT
[ENA]
¡û
>WENV181412263
OGCI01109611
[OGCI] hot springs metagenome; Hot spring water
484
393
-
Ser
GCT
[ENA]
¢þ
>WENV181415074
OGCL01003610
[OGCL] hot springs metagenome; Hot spring water
6630
6539
-
Ser
GCT
[ENA]
¢þ
>WENV170000798
AFSR01005034
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
657
748
+
Ser
GCT
[ENA]
¢þ
>C181030475
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
2234101
2234192
+
Ser
GCT
-
¡û
>C191001227
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
619977
619886
-
Ser
GCT
-
¡û
>C191085239
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
412324
412233
-
Ser
GCT
-
¡û
>C141007956
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
318568
318477
-
Ser
GCT
-
¡û
>W10128298
CACA01000333
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
3141
3232
+
Ser
GCT
[ENA]
¡û
>WENV11101141
AFSR01005034
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
657
748
+
Ser
GCT
[ENA]
¡û
>W11185268
CACA01000333
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
3141
3232
+
Ser
GCT
[ENA]
¡û
>W1611066552
MBRE01000051
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
71507
71602
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK