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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338647 (47 seq.)
>W1710875552
LMOM01000012
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
88338
88412
+
Val
CAC
[ENA]
¡û
>W131104575
APCS01000047
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
21181
21255
+
Val
CAC
[ENA]
¡û
>W131213917
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
107749
107675
-
Val
CAC
[ENA]
¡û
>W131237129
AUMV01000028
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
11778
11704
-
Val
CAC
[ENA]
¡û
>W131176786
ARKH01000109
Deinococcota
Deinococcus aquatilis DSM 23025 [ARKH]
35211
35285
+
Val
CAC
[ENA]
¡û
>W1711708246
MSTI01000066
Deinococcota
Deinococcus marmoris [MSTI]
49453
49379
-
Val
CAC
[ENA]
¡û
>W1711743918
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
2345090
2345164
+
Val
CAC
[ENA]
¡û
>W1712080681
NHMK01000030
Deinococcota
Deinococcus indicus [NHMK]
139890
139816
-
Val
CAC
[ENA]
¡û
>C007971
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
498414
498340
-
Val
CAC
[Ensembl]
¡û
>WENV180231908
OBCO01000030
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
197586
197660
+
Val
CAC
[ENA]
¢þ
>WENV180232917
OBCP01000031
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
197586
197660
+
Val
CAC
[ENA]
¢þ
>WENV180569682
OCLR01000306
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
36746
36672
-
Val
CAC
[ENA]
¢þ
>WENV180570718
OCLS01000439
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
15090
15016
-
Val
CAC
[ENA]
¢þ
>WENV180571277
OCLT01000033
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
197586
197660
+
Val
CAC
[ENA]
¢þ
>WENV180573516
OCLW01000032
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
197586
197660
+
Val
CAC
[ENA]
¢þ
>WENV180639589
OCRL01000035
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
197586
197660
+
Val
CAC
[ENA]
¢þ
>WENV180640517
OCRM01000033
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
197586
197660
+
Val
CAC
[ENA]
¢þ
>WENV181223696
OFDC01079771
[OFDC] hot springs metagenome; Water
120
46
-
Val
CAC
[ENA]
¢þ
>W141154776
AXLL01000068
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
14072
14146
+
Val
CAC
[ENA]
¡û
>C181179557
CP029494
Deinococcota
Deinococcus irradiatisoli 17bor-2 [CP029494]
2676326
2676400
+
Val
CAC
-
¡û
>C181196492
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
53462
53388
-
Val
CAC
-
¡û
>C191018441
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
1041427
1041501
+
Val
CAC
-
¡û
>W141525666
JHAC01000004
Deinococcota
Deinococcus phoenicis [JHAC]
170419
170493
+
Val
CAC
[ENA]
¡û
>C191121204
CP034183
Deinococcota
Deinococcus psychrotolerans S14-83 [CP034183, CP034184]
1686750
1686824
+
Val
CAC
-
¡û
>W141561444
JHYL01000001
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
197878
197952
+
Val
CAC
[ENA]
¡û
>W141702047
JMLF01000001
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
197763
197837
+
Val
CAC
[ENA]
¡û
>W141731124
JNIV01000026
Deinococcota
Deinococcus marmoris DSM 12784 [JNIV]
1506
1432
-
Val
CAC
[ENA]
¡û
>W141731175
JNIW01000017
Deinococcota
Deinococcus frigens DSM 12807 [JNIW]
5813
5739
-
Val
CAC
[ENA]
¡û
>C09103908
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
2108516
2108442
-
Val
CAC
[Ensembl]
¡û
>W1911597462
PNOR01000004
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
44426
44500
+
Val
CAC
[ENA]
¡û
>W1911802506
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
3008101
3008027
-
Val
CAC
[ENA]
¡û
>W1810003535
BFAG01000005
Deinococcota
Deinococcus aerius TR0125 [BFAG]
84999
85073
+
Val
CAC
[ENA]
¡û
>W1810238308
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
593399
593473
+
Val
CAC
[ENA]
¡û
>W1810671629
QJSX01000021
Deinococcota
Deinococcus yavapaiensis KR-236 DSM 18048 [QJSX]
25264
25338
+
Val
CAC
[ENA]
¡û
>C151063632
CP010028
Deinococcota
Deinococcus radiopugnans DY59 [CP010028]
964161
964235
+
Val
CAC
[Ensembl]
¡û
>C151081920
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
882505
882431
-
Val
CAC
[Ensembl]
¡û
>C10105373
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
498414
498340
-
Val
CAC
[Ensembl]
¡û
>C11107300
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
498414
498340
-
Val
CAC
[Ensembl]
¡û
>C121002083
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
2581020
2580946
-
Val
CAC
[Ensembl]
¡û
>C161034753
CP011387
Deinococcota
Deinococcus puniceus DY1 [CP011387]
2768980
2768906
-
Val
CAC
[Ensembl]
¡û
>C161061614
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
2237755
2237681
-
Val
CAC
[Ensembl]
¡û
>C161082975
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
2227167
2227241
+
Val
CAC
-
¡û
>W1610638988
LIYN01000224
Deinococcota
Deinococcus sp. UR1 [LIYN]
11681
11755
+
Val
CAC
[ENA]
¡û
>W1610737898
LMOM01000012
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
88338
88412
+
Val
CAC
[ENA]
¡û
>W1710542280
FNZA01000016
Deinococcota
Deinococcus reticulitermitis [FNZA]
9856
9782
-
Val
CAC
[ENA]
¡û
>W1710605340
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
377178
377104
-
Val
CAC
[ENA]
¡û
>W1710774882
LIYN01000224
Deinococcota
Deinococcus sp. UR1 [LIYN]
11681
11755
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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