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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338762 (78 seq.)
>W1710861311
LMDN01000001
Actinomycetota
Leifsonia sp. Root4 [LMDN]
109963
109891
-
Gln
CTG
[ENA]
¡û
>W1710865166
LMGL01000002
Actinomycetota
Microbacterium sp. Root166 [LMGL]
679278
679204
-
Gln
CTG
[ENA]
¡û
>W1710865602
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
770037
769963
-
Gln
CTG
[ENA]
¡û
>W131191142
ASHR01000014
Actinomycetota
Agrococcus pavilionensis RW1 [ASHR]
299680
299752
+
Gln
CTG
[ENA]
¡û
>W131234889
AULD01000006
Actinomycetota
Agrococcus lahaulensis DSM 17612 [AULD]
450856
450784
-
Gln
CTG
[ENA]
¡û
>W1711385605
MEEJ01000011
Actinomycetota
Microbacterium sp. SCN 70-200 [MEEJ]
149003
149077
+
Gln
CTG
[ENA]
¡û
>W1711503462
MKTQ01000014
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
149230
149304
+
Gln
CTG
[ENA]
¡û
>WENV180103032
OAPA01000249
[OAPA] marine metagenome; ENVO:00002010
4494
4566
+
Gln
CTG
[ENA]
¢þ
>WENV180209007
OBAK01004121
[OBAK] marine metagenome; ENVO.00002150
501
573
+
Gln
CTG
[ENA]
¢þ
>WENV180209590
OBAL01005836
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1134
1206
+
Gln
CTG
[ENA]
¢þ
>WENV180360659
OBNU01008085
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
284
212
-
Gln
CTG
[ENA]
¢þ
>WENV180361692
OBNW01000030
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
7243
7315
+
Gln
CTG
[ENA]
¢þ
>WENV180364947
OBOB01000232
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
319
391
+
Gln
CTG
[ENA]
¢þ
>WENV180366155
OBOC01160154
[OBOC] marine metagenome; ocean water
125
53
-
Gln
CTG
[ENA]
¢þ
>WENV180367937
OBOF01011423
[OBOF] marine metagenome; ENVO:00002010
298
370
+
Gln
CTG
[ENA]
¢þ
>WENV180372911
OBOI01153674
[OBOI] sediment metagenome; sediment
148
76
-
Gln
CTG
[ENA]
¢þ
>WENV180376345
OBOM01002338
[OBOM] marine metagenome; Seawater
216
144
-
Gln
CTG
[ENA]
¢þ
>WENV180381704
OBOS01011021
[OBOS] marine metagenome; ENVO 00002150
223
295
+
Gln
CTG
[ENA]
¢þ
>WENV180391691
OBPN01021803
[OBPN] marine metagenome; seawater
243
171
-
Gln
CTG
[ENA]
¢þ
>WENV180393742
OBPR01004941
[OBPR] marine metagenome; ENVO:00002042
407
335
-
Gln
CTG
[ENA]
¢þ
>WENV180591623
OCOV01060955
[OCOV] marine metagenome; ENVO:01000301
435
363
-
Gln
CTG
[ENA]
¢þ
>WENV180694041
OCZS011883130
[OCZS] soil metagenome; soil
157
85
-
Gln
CTG
[ENA]
¢þ
>WENV181120646
OEFK01023296
[OEFK] marine metagenome; ENVO:00002010 seawater
351
423
+
Gln
CTG
[ENA]
¢þ
>WENV181385533
OFRI01113462
[OFRI] wastewater metagenome; Exp Tend VB 90WW
357
429
+
Gln
CTG
[ENA]
¢þ
>ENV08000703
ABMI01005788
saltern metagenome; microbial fraction from low salinity saltern in San Diego, CA
42
116
+
Gln
CTG
[ENA]
¡û
>WENV170552130
CXWJ01040966
[CXWJ] wastewater metagenome; activated sludge
526
452
-
Gln
CTG
[ENA]
¢þ
>WENV170595860
FUFK012003730
[FUFK] metagenome; unknown
163
91
-
Gln
CTG
[ENA]
¢þ
>WENV170606180
FUWD010628787
[FUWD] metagenome; unknown
276
348
+
Gln
CTG
[ENA]
¢þ
>WENV170622397
FUWD013101480
[FUWD] metagenome; unknown
412
484
+
Gln
CTG
[ENA]
¢þ
>WENV170630621
FUWD013315897
[FUWD] metagenome; unknown
412
484
+
Gln
CTG
[ENA]
¢þ
>C181002031
AP017457
Actinomycetota
Aurantimicrobium minutum KNC [AP017457]
327347
327419
+
Gln
CTG
-
¡û
>C181092802
CP023994
Actinomycetota
Aurantimicrobium photophilum MWH-Mo1 [CP023994]
555580
555652
+
Gln
CTG
-
¡û
>C181194473
CP030929
Actinomycetota
Aurantimicrobium sp. MWH-Uga1 [CP030929]
1074326
1074254
-
Gln
CTG
-
¡û
>C191074903
CP031423
Actinomycetota
Microbacterium lemovicicum Viu22 [CP031423]
1812059
1811985
-
Gln
CTG
-
¡û
>C191178321
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
348393
348465
+
Gln
CTG
-
¡û
>C191178360
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
330945
331017
+
Gln
CTG
-
¡û
>C191178399
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
314724
314796
+
Gln
CTG
-
¡û
>W141565020
JIBF01000009
Actinomycetota
Microbacterium sp. UNC423CL45Tsu [JIBF]
656745
656819
+
Gln
CTG
[ENA]
¡û
>WENV002345
AACY020065637
Marine microbial communities from Global Ocean Sampling (GOS)
1288
1212
-
Gln
CTG
[ENA]
>W141817483
JQKT01000007
Actinomycetota
Microbacterium sp. UNCCL10 [JQKT]
807711
807785
+
Gln
CTG
[ENA]
¡û
>W1910231936
FPEG01000003
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
123201
123129
-
Gln
CTG
[ENA]
¡û
>W1910784602
MPZN01000021
Actinomycetota
Microterricola pindariensis PON 10 [MPZN]
37675
37603
-
Gln
CTG
[ENA]
¡û
>SRA1000748
SRR001046.252590
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
42
116
+
Gln
CTG
[SRA]
>W1810277192
PSTQ01000002
Actinomycetota
Pseudoclavibacter sp. AY1F1 [PSTQ]
89382
89454
+
Gln
CTG
[ENA]
¡û
>W1810277354
PSTU01000008
Actinomycetota
Pseudoclavibacter sp. Z016 [PSTU]
20936
21008
+
Gln
CTG
[ENA]
¡û
>W1810277532
PSTX01000020
Actinomycetota
Pseudoclavibacter sp. RFBJ5 [PSTX]
103995
104067
+
Gln
CTG
[ENA]
¡û
>W1810277542
PSTY01000012
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
103995
104067
+
Gln
CTG
[ENA]
¡û
>W1810277596
PSTZ01000005
Actinomycetota
Pseudoclavibacter sp. RFBB5 [PSTZ]
86478
86552
+
Gln
CTG
[ENA]
¡û
>W1810277642
PSUA01000007
Actinomycetota
Pseudoclavibacter sp. RFBA6 [PSUA]
43122
43196
+
Gln
CTG
[ENA]
¡û
>W1810282053
PSXX01000015
Actinomycetota
Pseudoclavibacter sp. AY1H1 [PSXX]
74245
74173
-
Gln
CTG
[ENA]
¡û
>W1810282104
PSXZ01000003
Actinomycetota
Pseudoclavibacter sp. RFBJ3 [PSXZ]
104217
104289
+
Gln
CTG
[ENA]
¡û
>W1810282163
PSYA01000005
Actinomycetota
Pseudoclavibacter sp. RFBI5 [PSYA]
98031
98103
+
Gln
CTG
[ENA]
¡û
>W1810282211
PSYB01000006
Actinomycetota
Pseudoclavibacter sp. RFBI4 [PSYB]
103995
104067
+
Gln
CTG
[ENA]
¡û
>W1810282287
PSYC01000037
Actinomycetota
Pseudoclavibacter sp. RFBG4 [PSYC]
42851
42923
+
Gln
CTG
[ENA]
¡û
>W1810503478
QBKD01000001
Actinomycetota
Microbacteriaceae bacterium MWH-Ta3 [QBKD]
268484
268412
-
Gln
CTG
[ENA]
¡û
>C151025288
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
1079107
1079035
-
Gln
CTG
[Ensembl]
¡û
>WENV042908
AACY022274587
Marine microbial communities from Global Ocean Sampling (GOS)
429
353
-
Gln
CTG
[ENA]
>W1511432349
JUGL01000012
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
284257
284331
+
Gln
CTG
[ENA]
¡û
>W1511432634
JUGQ01000003
Actinomycetota
Microbacterium sp. CF335 [JUGQ]
359043
359115
+
Gln
CTG
[ENA]
¡û
>WENV047331
AACY022658693
Marine microbial communities from Global Ocean Sampling (GOS)
517
593
+
Gln
CTG
[ENA]
>WENV055993
AACY023245845
Marine microbial communities from Global Ocean Sampling (GOS)
754
678
-
Gln
CTG
[ENA]
>C161063196
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
1881399
1881471
+
Gln
CTG
[Ensembl]
¡û
>C161067220
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
876017
876089
+
Gln
CTG
[Ensembl]
¡û
>WENV059036
AACY023351842
Marine microbial communities from Global Ocean Sampling (GOS)
1163
1239
+
Gln
CTG
[ENA]
>W1610112242
CZJS01000106
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
68693
68619
-
Gln
CTG
[ENA]
¡û
>W1610112545
CZJY01000064
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
94629
94703
+
Gln
CTG
[ENA]
¡û
>WENV070216
AACY023801663
Marine microbial communities from Global Ocean Sampling (GOS)
1232
1156
-
Gln
CTG
[ENA]
>W1610723657
LMDN01000001
Actinomycetota
Leifsonia sp. Root4 [LMDN]
109963
109891
-
Gln
CTG
[ENA]
¡û
>W1610727512
LMGL01000002
Actinomycetota
Microbacterium sp. Root166 [LMGL]
679278
679204
-
Gln
CTG
[ENA]
¡û
>W1610727948
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
770037
769963
-
Gln
CTG
[ENA]
¡û
>WENV076789
AACY024109588
Marine microbial communities from Global Ocean Sampling (GOS)
472
396
-
Gln
CTG
[ENA]
>W1710114946
CZJS01000106
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
68693
68619
-
Gln
CTG
[ENA]
¡û
>W1710115249
CZJY01000064
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
94629
94703
+
Gln
CTG
[ENA]
¡û
>W1710565098
FOQZ01000001
Actinomycetota
Microbacterium saccharophilum unc380mfsha3.1 [FOQZ]
807728
807802
+
Gln
CTG
[ENA]
¡û
>W1710575388
FOZD01000001
Actinomycetota
Agromyces sp. CF514 [FOZD]
2089920
2089992
+
Gln
CTG
[ENA]
¡û
>W1710575708
FOZJ01000002
Actinomycetota
Microbacterium sp. cf046 [FOZJ]
964612
964538
-
Gln
CTG
[ENA]
¡û
>W1710575844
FOZN01000003
Actinomycetota
Agrococcus baldri [FOZN]
218400
218474
+
Gln
CTG
[ENA]
¡û
>W1710599966
FTPO01000001
Actinomycetota
Microbacterium sp. RU33B [FTPO]
1127919
1127991
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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