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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339971 (105 seq.)
>A171000408
CP001338
Euryarchaeota
Methanosphaerula palustris E1-9c [CP001338]
1823802
1823729
-
Gly
GCC
-
¡û
>A171002817
CP003117
Euryarchaeota
Methanothrix harundinacea 6Ac [CP003117]
235976
235904
-
Gly
GCC
-
¡û
>A171002833
CP003167
Euryarchaeota
Methanoregula formicica SMSP [CP003167]
1802387
1802460
+
Gly
GCC
-
¡û
>A171007199
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
1967634
1967562
-
Gly
GCC
-
¡û
>A171007555
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
1984072
1983998
-
Gly
GCC
-
¡û
>A171007619
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
1868144
1868218
+
Gly
GCC
-
¡û
>WENV180094345
MTBK01003225
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
420
492
+
Gly
GCC
[ENA]
¢þ
>WENV180094707
MTBK01026349
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
443
371
-
Gly
GCC
[ENA]
¢þ
>WENV180097311
MTBK01180619
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1297
1369
+
Gly
GCC
[ENA]
¢þ
>WENV180098853
MTBK01271182
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
5267
5193
-
Gly
GCC
[ENA]
¢þ
>WENV180318139
OBKL01098939
[OBKL] soil metagenome; Alaskan Permafrost
110
183
+
Gly
GCC
[ENA]
¢þ
>WENV181229755
OFEK01000047
[OFEK] activated sludge metagenome; Anaerobic digester
126266
126194
-
Gly
GCC
[ENA]
¢þ
>WENV181230863
OFEK01004423
[OFEK] activated sludge metagenome; Anaerobic digester
5968
6043
+
Gly
GCC
[ENA]
¢þ
>WENV181230891
OFEK01004835
[OFEK] activated sludge metagenome; Anaerobic digester
660
585
-
Gly
GCC
[ENA]
¢þ
>WENV181230957
OFEK01006033
[OFEK] activated sludge metagenome; Anaerobic digester
4211
4136
-
Gly
GCC
[ENA]
¢þ
>WENV181231121
OFEK01010255
[OFEK] activated sludge metagenome; Anaerobic digester
2825
2898
+
Gly
GCC
[ENA]
¢þ
>WENV181231555
OFEK01037236
[OFEK] activated sludge metagenome; Anaerobic digester
76
1
-
Gly
GCC
[ENA]
¢þ
>WENV181311826
OFJB01014535
[OFJB] sludge metagenome; sludge
1823
1750
-
Gly
GCC
[ENA]
¢þ
>WENV181359215
OFMW01000190
[OFMW] sediment metagenome; Lake sediment
105
33
-
Gly
GCC
[ENA]
¢þ
>WENV181360738
OFMZ01001024
[OFMZ] sediment metagenome; Lake sediment
280
208
-
Gly
GCC
[ENA]
¢þ
>WENV181360797
OFNA01000279
[OFNA] sediment metagenome; Lake sediment
404
476
+
Gly
GCC
[ENA]
¢þ
>WENV181360812
OFNB01000497
[OFNB] sediment metagenome; Lake sediment
630
702
+
Gly
ACC
[ENA]
¢þ
>WENV181361312
OFNN01000096
[OFNN] sediment metagenome; Lake sediment
788
860
+
Gly
GCC
[ENA]
¢þ
>WENV181361444
OFNX01000199
[OFNX] sediment metagenome; Lake sediment
1073
1001
-
Gly
GCC
[ENA]
¢þ
>WENV181361468
OFNY01000232
[OFNY] sediment metagenome; Lake sediment
251
179
-
Gly
GCC
[ENA]
¢þ
>WENV181361495
OFNZ01000583
[OFNZ] sediment metagenome; Lake sediment
106
33
-
Gly
GCC
[ENA]
¢þ
>WENV181361752
OFOH01000969
[OFOH] sediment metagenome; Lake sediment
87
159
+
Gly
GCC
[ENA]
¢þ
>WENV181361765
OFOI01000046
[OFOI] sediment metagenome; Lake sediment
798
870
+
Gly
GCC
[ENA]
¢þ
>WENV181362926
OFOL01000936
[OFOL] sediment metagenome; Lake sediment
235
307
+
Gly
GCC
[ENA]
¢þ
>WENV181363164
OFOT01000509
[OFOT] sediment metagenome; Lake sediment
817
745
-
Gly
GCC
[ENA]
¢þ
>WENV181390774
OFRP01000789
[OFRP] sediment metagenome; Lake sediment
396
324
-
Gly
GCC
[ENA]
¢þ
>WENV181412581
OGCK01002089
[OGCK] hot springs metagenome; hot spring sediment
3700
3773
+
Gly
GCC
[ENA]
¢þ
>WENV183512322
OMKS01000269
[OMKS] sediment metagenome; hot spring sediment
16730
16802
+
Gly
GCC
[ENA]
¢þ
>WENV183513176
OMKS01003111
[OMKS] sediment metagenome; hot spring sediment
8147
8219
+
Gly
GCC
[ENA]
¢þ
>WENV183515051
OMKS01043974
[OMKS] sediment metagenome; hot spring sediment
1730
1658
-
Gly
GCC
[ENA]
¢þ
>WENV183702291
PDVH01036185
[PDVH] alkali sediment metagenome; glacial lake sediment
382
455
+
Gly
GCC
[ENA]
¢þ
>WENV183702339
PDVH01042750
[PDVH] alkali sediment metagenome; glacial lake sediment
284
211
-
Gly
GCC
[ENA]
¢þ
>WENV183702915
PDVJ01000772
[PDVJ] alkali sediment metagenome; glacial lake sediment
1024
952
-
Gly
GCC
[ENA]
¢þ
>WENV183703075
PDVJ01002417
[PDVJ] alkali sediment metagenome; glacial lake sediment
5000
5072
+
Gly
GCC
[ENA]
¢þ
>WENV183703676
PDVJ01034924
[PDVJ] alkali sediment metagenome; glacial lake sediment
583
511
-
Gly
GCC
[ENA]
¢þ
>At1279
CP000562
Euryarchaeota
Methanoculleus marisnigri JR1 [CP000562]
959094
959023
-
Gly
GCC
[Ensembl]
¡û
>WENV170561832
CZCB01000182
[CZCB] anaerobic digester metagenome; anaerobic digester
66561
66633
+
Gly
GCC
[ENA]
¢þ
>WENV170562660
CZCB01004283
[CZCB] anaerobic digester metagenome; anaerobic digester
1284
1359
+
Gly
GCC
[ENA]
¢þ
>WENV170668692
LAHQ01015509
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
3058
2986
-
Gly
GCC
[ENA]
¢þ
>WENV170670349
LAHT01002967
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
9898
9973
+
Gly
GCC
[ENA]
¢þ
>WENV170670484
LAHT01018084
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
1312
1386
+
Gly
GCC
[ENA]
¢þ
>WENV170670774
LAHU01000802
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
10665
10590
-
Gly
GCC
[ENA]
¢þ
>WENV170670778
LAHU01001000
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
3461
3390
-
Gly
GCC
[ENA]
¢þ
>WENV170670967
LAHU01006576
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
1127
1201
+
Gly
GCC
[ENA]
¢þ
>WENV170671815
LAHU01177586
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
1
73
+
Gly
GCC
[ENA]
¢þ
>WENV170674820
LCWY01007234
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
169
240
+
Gly
GCC
[ENA]
¢þ
>WENV170677288
LDZT01004718
[LDZT] terrestrial metagenome; oil reservoir sample SB1
449
522
+
Gly
GCC
[ENA]
¢þ
>WENV170677465
LDZT01005521
[LDZT] terrestrial metagenome; oil reservoir sample SB1
18811
18739
-
Gly
GCC
[ENA]
¢þ
>WENV170677559
LDZT01006967
[LDZT] terrestrial metagenome; oil reservoir sample SB1
35315
35389
+
Gly
GCC
[ENA]
¢þ
>WENV170677663
LDZT01007927
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1643
1570
-
Gly
GCC
[ENA]
¢þ
>WENV170678119
LDZT01011246
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1205
1279
+
Gly
GCC
[ENA]
¢þ
>WENV170678642
LDZU01003528
[LDZU] terrestrial metagenome; oil reservoir sample SB2
72639
72567
-
Gly
GCC
[ENA]
¢þ
>WENV170678682
LDZU01003737
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1909
1983
+
Gly
GCC
[ENA]
¢þ
>WENV170678709
LDZU01003971
[LDZU] terrestrial metagenome; oil reservoir sample SB2
8956
9029
+
Gly
GCC
[ENA]
¢þ
>WENV170678739
LDZU01004206
[LDZU] terrestrial metagenome; oil reservoir sample SB2
174620
174694
+
Gly
GCC
[ENA]
¢þ
>WENV170683870
LFRM01008664
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
23789
23864
+
Gly
GCC
[ENA]
¢þ
>WENV170684473
LFRM01041227
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1156
1231
+
Gly
GCC
[ENA]
¢þ
>WENV170684770
LFRM01057710
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
30929
31001
+
Gly
GCC
[ENA]
¢þ
>WENV170688454
LFRM01246133
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
555
630
+
Gly
GCC
[ENA]
¢þ
>WENV170715271
LNQE01001209
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
15677
15605
-
Gly
GCC
[ENA]
¢þ
>WENV170715979
LQYC01000039
[LQYC] bioreactor metagenome; benzene-degrading methanogenic enrichment culture from a contaminated aquifer at an oil
177869
177796
-
Gly
GCC
[ENA]
¢þ
>WENV170716822
LSQX01012957
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
82
7
-
Gly
GCC
[ENA]
¢þ
>WENV170720375
LSQX01151218
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
324
252
-
Gly
GCC
[ENA]
¢þ
>WENV170722558
LSQX01233714
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1522
1595
+
Gly
GCC
[ENA]
¢þ
>WENV170725054
LSQX01328967
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
23706
23781
+
Gly
GCC
[ENA]
¢þ
>WENV170725069
LSQX01329381
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1124
1197
+
Gly
GCC
[ENA]
¢þ
>WENV170725435
LSQX01342336
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1430
1505
+
Gly
GCC
[ENA]
¢þ
>WENV170726865
LSQX01396524
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6115
6043
-
Gly
GCC
[ENA]
¢þ
>WENV170968992
MTKW01018433
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4455
4381
-
Gly
GCC
[ENA]
¢þ
>WENV170970911
MTKX01000470
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
37310
37384
+
Gly
GCC
[ENA]
¢þ
>WENV170972726
MTKX01045713
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
752
678
-
Gly
GCC
[ENA]
¢þ
>WENV170976056
MTKZ01004137
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
59615
59689
+
Gly
GCC
[ENA]
¢þ
>W1910211673
FMID01000026
Euryarchaeota
Methanoculleus chikugoensis [FMID]
18657
18585
-
Gly
GCC
[ENA]
¡û
>W1910226950
FNFT01000003
Euryarchaeota
Methanoculleus thermophilus DSM 2373 [FNFT]
68807
68879
+
Gly
GCC
[ENA]
¡û
>W1910572519
JMIO01000034
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
4353
4279
-
Gly
GCC
[ENA]
¡û
>W1910583830
JXOJ01000005
Euryarchaeota
Methanoculleus sediminis S3Fa [JXOJ]
14538
14464
-
Gly
GCC
[ENA]
¡û
>W1910617180
LHQS01000003
Euryarchaeota
Methanoculleus taiwanensis CYW4 [LHQS]
337659
337733
+
Gly
GCC
[ENA]
¡û
>W1910783519
MPOY01000085
Euryarchaeota
Methanoculleus sp. EBM-46 [MPOY]
4097
4169
+
Gly
GCC
[ENA]
¡û
>W1911581319
PGCL01000002
Euryarchaeota
Methanofollis fontis FWC-SCC2 [PGCL]
395329
395401
+
Gly
GCC
[ENA]
¡û
>W1610000275
AASI01000015
Euryarchaeota
Methanoculleus marisnigri JR1 [AASI]
26569
26644
+
Gly
GCC
[ENA]
¡û
>W1610001025
ABZB01000005
Euryarchaeota
Methanosphaerula palustris palustris E1-9c [ABZB]
104697
104624
-
Gly
GCC
[ENA]
¡û
>W1610003481
AGCO01000003
Euryarchaeota
Methanofollis liminatans DSM 4140 [AGCO]
101088
101160
+
Gly
GCC
[ENA]
¡û
>W1610004242
AGIY02000001
Euryarchaeota
Methanolinea tarda NOBI-1 [AGIY]
558347
558419
+
Gly
GCC
[ENA]
¡û
>W1610045242
BBBH01000047
Euryarchaeota
Methanoculleus chikugoensis JCM 10825 [BBBH]
7855
7783
-
Gly
GCC
[ENA]
¡û
>W1610062966
BCNW01000001
Euryarchaeota
Methanofollis ethanolicus HASU [BCNW]
1404908
1404980
+
Gly
GCC
[ENA]
¡û
>W1610062968
BCNW01000001
Euryarchaeota
Methanofollis ethanolicus HASU [BCNW]
1607421
1607493
+
Gly
GCC
[ENA]
¡û
>W1610063005
BCNX01000003
Euryarchaeota
Methanoculleus thermophilus CR-1 [BCNX]
202199
202127
-
Gly
GCC
[ENA]
¡û
>W1610063073
BCNY01000014
Euryarchaeota
Methanoculleus horonobensis T10 [BCNY]
409897
409822
-
Gly
GCC
[ENA]
¡û
>W1610605000
LFRN01000004
Euryarchaeota
Candidatus Methanoculleus thermohydrogenotrophicum DTU006 [LFRN]
23789
23864
+
Gly
GCC
[ENA]
¡û
>W1610605047
LFRO01000014
Euryarchaeota
Methanoculleus sp. DTU007 [LFRO]
30929
31001
+
Gly
GCC
[ENA]
¡û
>W1610613369
LGFT01000033
Euryarchaeota
Methanothrix harundinacea [LGFT]
18811
18739
-
Gly
GCC
[ENA]
¡û
>W1610613684
LGGD01000140
Euryarchaeota
Methanoculleus marisnigri [LGGD]
1205
1279
+
Gly
GCC
[ENA]
¡û
>W1610613801
LGGJ01000005
Euryarchaeota
Methanocalculus sp. 52_23 [LGGJ]
35315
35389
+
Gly
GCC
[ENA]
¡û
>W1610614357
LGHB01000003
Euryarchaeota
Methanothrix harundinacea [LGHB]
72639
72567
-
Gly
GCC
[ENA]
¡û
>W1610614419
LGHE01000145
Euryarchaeota
Methanoculleus marisnigri [LGHE]
1909
1983
+
Gly
GCC
[ENA]
¡û
>W1610614445
LGHF01000004
Euryarchaeota
Methanomicrobiales archaeon 53_19 [LGHF]
174620
174694
+
Gly
GCC
[ENA]
¡û
>W1610685968
LKUD01000092
Euryarchaeota
Methanoculleus sp. SDB [LKUD]
20502
20576
+
Gly
GCC
[ENA]
¡û
>W1610945926
LUYE01000027
Euryarchaeota
Methanosarcinales archaeon Methan_01 [LUYE]
10233
10161
-
Gly
GCC
[ENA]
¡û
>W1610945967
LUYF01000232
Euryarchaeota
Methanosarcinales archaeon Methan_02 [LUYF]
4587
4659
+
Gly
GCC
[ENA]
¡û
>W1610946080
LUYK01000177
Euryarchaeota
Methanomicrobiales archaeon Methan_07 [LUYK]
3266
3338
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK