This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340832 (61 seq.)
>W1711137684
LVBT01000182
Thermotogota
Thermotogales bacterium Thermo_01 [LVBT]
1260
1334
+
Val
GAC
[ENA]
¡û
>W1711629391
MPOW01000268
Thermotogota
Thermotogales bacterium EBM-19 [MPOW]
6119
6045
-
Val
GAC
[ENA]
¡û
>W1711629580
MPPD01000051
Thermotogota
Thermotogales bacterium EBM-48 [MPPD]
10505
10431
-
Val
GAC
[ENA]
¡û
>W131245586
CARH01000077
Thermotogota
Mesotoga infera PhosAc3 [CARH]
13693
13619
-
Val
GAC
[ENA]
¡û
>WENV180098794
MTBK01267284
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
842
768
-
Val
GAC
[ENA]
¢þ
>WENV181230657
OFEK01002155
[OFEK] activated sludge metagenome; Anaerobic digester
9091
9017
-
Val
GAC
[ENA]
¢þ
>C08007585
CP000879
Thermotogota
Petrotoga mobilis SJ95 [CP000879]
1691074
1691003
-
Val
GAC
[Ensembl]
¡û
>WENV183512730
OMKS01001221
[OMKS] sediment metagenome; hot spring sediment
10203
10277
+
Val
GAC
[ENA]
¢þ
>WENV170561986
CZCB01000511
[CZCB] anaerobic digester metagenome; anaerobic digester
3140
3066
-
Val
GAC
[ENA]
¢þ
>WENV170643664
JMBV01000046
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
5581
5655
+
Val
GAC
[ENA]
¢þ
>WENV170644498
JMBW01021223
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
219
293
+
Val
GAC
[ENA]
¢þ
>WENV170645033
JMBX01001516
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
74
1
-
Val
GAC
[ENA]
¢þ
>WENV170671219
LAHU01027009
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
4572
4646
+
Val
GAC
[ENA]
¢þ
>WENV170676095
LDZR01000884
[LDZR] terrestrial metagenome; oil reservoir sample K2
4232
4158
-
Val
GAC
[ENA]
¢þ
>WENV170677252
LDZT01004483
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2383
2309
-
Val
GAC
[ENA]
¢þ
>WENV170683842
LFRM01007734
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
45299
45373
+
Val
GAC
[ENA]
¢þ
>WENV170690295
LFRM01334069
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2807
2881
+
Val
GAC
[ENA]
¢þ
>WENV170725486
LSQX01344249
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2850
2924
+
Val
GAC
[ENA]
¢þ
>WENV170968554
MTKW01011190
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
9459
9533
+
Val
GAC
[ENA]
¢þ
>WENV170976574
MTKZ01009444
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7522
7596
+
Val
GAC
[ENA]
¢þ
>C181217924
LS974202
Thermotogota
Mesotoga infera [LS974202]
1973924
1973998
+
Val
GAC
-
¡û
>W1910002490
ATCT01000010
Thermotogota
Mesotoga sp. Brook.08.YT.4.2.5.4. [ATCT]
13396
13322
-
Val
GAC
[ENA]
¡û
>W1910002810
ATNS01000028
Thermotogota
Petrotoga sp. HWH.PT.55.6.1 [ATNS]
18224
18150
-
Val
GAC
[ENA]
¡û
>W1910002934
AUPM01000051
Thermotogota
Petrotoga sp. 9PW.55.5.1 [AUPM]
20688
20614
-
Val
GAC
[ENA]
¡û
>W1910005695
AYSI01000009
Thermotogota
Mesotoga sp. TolDC [AYSI]
9072
8998
-
Val
GAC
[ENA]
¡û
>W1910005767
AYTV01000003
Thermotogota
Mesotoga sp. H07.pep.5.3 [AYTV]
13159
13085
-
Val
GAC
[ENA]
¡û
>W1910005822
AYTW01000006
Thermotogota
Mesotoga sp. Brook.08.105.5.1 [AYTW]
13250
13176
-
Val
GAC
[ENA]
¡û
>W1910005892
AYTX01000050
Thermotogota
Mesotoga sp. Brook.08.YT.4.2.5.1 [AYTX]
13227
13153
-
Val
GAC
[ENA]
¡û
>W1910006029
AZRI01000017
Thermotogota
Petrotoga sp. 9T1HF07.CasAA.8.2 [AZRI]
10969
10895
-
Val
GAC
[ENA]
¡û
>W1910006098
AZRJ01000039
Thermotogota
Petrotoga sp. HWHPT.55.6.3 [AZRJ]
10701
10627
-
Val
GAC
[ENA]
¡û
>W1910006181
AZRL01000016
Thermotogota
Petrotoga olearia DSM 13574 [AZRL]
118368
118294
-
Val
GAC
[ENA]
¡û
>W1910006194
AZRM01000001
Thermotogota
Petrotoga miotherma DSM 10691 [AZRM]
2314
2240
-
Val
GAC
[ENA]
¡û
>W1910006264
AZRN01000023
Thermotogota
Petrotoga mexicana DSM 14811 [AZRN]
1314
1240
-
Val
GAC
[ENA]
¡û
>W1910563549
JAHC01000030
Thermotogota
Petrotoga sibirica DSM 13575 [JAHC]
20369
20295
-
Val
GAC
[ENA]
¡û
>W1910563590
JAIP01000015
Thermotogota
Petrotoga sp. SL27 [JAIP]
6711
6785
+
Val
GAC
[ENA]
¡û
>W1910563669
JALY01000191
Thermotogota
Petrotoga halophila DSM 16923 [JALY]
4179
4105
-
Val
GAC
[ENA]
¡û
>W1910563670
JALY01000193
Thermotogota
Petrotoga halophila DSM 16923 [JALY]
700
626
-
Val
GAC
[ENA]
¡û
>W1910568634
JFHJ01000188
Thermotogota
Mesotoga sp. HF07.pep.5.2.highcov [JFHJ]
9602
9528
-
Val
GAC
[ENA]
¡û
>W1910568682
JFHL01000002
Thermotogota
Mesotoga sp. BH458_6_3_2_1 [JFHL]
13020
12946
-
Val
GAC
[ENA]
¡û
>W1910568724
JFHM01000004
Thermotogota
Mesotoga sp. H07pep.5.4 [JFHM]
13031
12957
-
Val
GAC
[ENA]
¡û
>W1910568824
JGVM01000036
Thermotogota
Petrotoga sp. HKA.pet.4.5 [JGVM]
35812
35738
-
Val
GAC
[ENA]
¡û
>W1910568835
JGVT01000001
Thermotogota
Petrotoga sp. Shatin.DS.tank11.9.2.9.3 [JGVT]
41198
41124
-
Val
GAC
[ENA]
¡û
>W1910572626
JMQL01000018
Thermotogota
Mesotoga sp. SC_4PWA21 [JMQL]
1002
928
-
Val
GAC
[ENA]
¡û
>W1910572646
JMRM01000036
Thermotogota
Mesotoga sp. SC_3PWM13N19 [JMRM]
3643
3569
-
Val
GAC
[ENA]
¡û
>W1910573501
JPGZ01000005
Thermotogota
Mesotoga sp. Brook.08.YT.4.2.5.2. [JPGZ]
13248
13174
-
Val
GAC
[ENA]
¡û
>W1910578205
JWIM01000003
Thermotogota
Mesotoga sp. B105.6.4 [JWIM]
13058
12984
-
Val
GAC
[ENA]
¡û
>C151001674
AP014510
Thermotogota
Thermotoga profunda AZM34c06 [AP014510]
24529
24603
+
Val
GAC
-
¡û
>C151104210
LN824141
Thermotogota
Defluviitoga tunisiensis [LN824141]
1625989
1626063
+
Val
GAC
[Ensembl]
¡û
>W10126209
AEDC01000001
Thermotogota
Mesotoga prima MesG1.Ag.4.2 [AEDC]
657519
657593
+
Val
GAC
[ENA]
¡û
>C11123152
CP002351
Thermotogota
Pseudothermotoga thermarum DSM 5069 [CP002351]
1880856
1880782
-
Val
GAC
[Ensembl]
¡û
>W11133470
AEDC01000001
Thermotogota
Mesotoga prima MesG1.Ag.4.2 [AEDC]
657519
657593
+
Val
GAC
[ENA]
¡û
>C121014222
CP003532
Thermotogota
Mesotoga prima MesG1.Ag.4.2 [CP003532]
233663
233589
-
Val
GAC
[Ensembl]
¡û
>W1610520898
JFHK01000004
Thermotogota
Kosmotoga arenicorallina S304 [JFHK]
184753
184827
+
Val
GAC
[ENA]
¡û
>W1610606944
LFTL01000002
Thermotogota
Thermotogaceae bacterium DTU111 [LFTL]
45299
45373
+
Val
GAC
[ENA]
¡û
>W1610612763
LGFC01000060
Thermotogota
Petrotoga mobilis [LGFC]
4232
4158
-
Val
GAC
[ENA]
¡û
>W1610614024
LGGP01000356
Thermotogota
Mesotoga prima [LGGP]
2383
2309
-
Val
GAC
[ENA]
¡û
>W1610948804
LVBT01000182
Thermotogota
Thermotogales bacterium Thermo_01 [LVBT]
1260
1334
+
Val
GAC
[ENA]
¡û
>W1710616432
JFHK01000004
Thermotogota
Kosmotoga arenicorallina S304 [JFHK]
184753
184827
+
Val
GAC
[ENA]
¡û
>W1710728231
LFTL01000002
Thermotogota
Thermotogaceae bacterium DTU111 [LFTL]
45299
45373
+
Val
GAC
[ENA]
¡û
>W1710734084
LGFC01000060
Thermotogota
Petrotoga mobilis [LGFC]
4232
4158
-
Val
GAC
[ENA]
¡û
>W1710735107
LGGP01000356
Thermotogota
Mesotoga prima [LGGP]
2383
2309
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK