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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341939 (42 seq.)
>W1711705120
MSQD01000026
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
12069
11995
-
Gly
CCC
[ENA]
¡û
>W131051996
AMYG01000059
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
13
87
+
Gly
CCC
[ENA]
¡û
>W131167543
ARDJ01000001
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
147892
147966
+
Gly
CCC
[ENA]
¡û
>w018989
AATV01000063
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
8662
8591
-
Gly
CCC
[ENA]
¡û
>w010164
AAKQ01000001
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
220582
220511
-
Gly
CCC
[ENA]
¡û
>WENV180097544
MTBK01195200
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
457
383
-
Gly
CCC
[ENA]
¢þ
>WENV180098485
MTBK01249111
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
466
392
-
Gly
CCC
[ENA]
¢þ
>W141092587
AVAF01000074
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
23490
23416
-
Gly
CCC
[ENA]
¡û
>WENV181226228
OFDK01000268
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
156
230
+
Gly
CCC
[ENA]
¢þ
>W141193997
AYSN01000072
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
104
178
+
Gly
CCC
[ENA]
¡û
>W141238370
BBKT01000054
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
2132
2206
+
Gly
CCC
[ENA]
¡û
>C08010978
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
1816123
1816052
-
Gly
CCC
[Ensembl]
¡û
>C08011062
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
2261698
2261627
-
Gly
CCC
[Ensembl]
¡û
>WENV170560963
CZCA01001533
[CZCA] anaerobic digester metagenome; anaerobic digester
597
523
-
Gly
CCC
[ENA]
¢þ
>WENV170561412
CZCA01008364
[CZCA] anaerobic digester metagenome; anaerobic digester
2494
2420
-
Gly
CCC
[ENA]
¢þ
>WENV170644370
JMBW01008564
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
58
132
+
Gly
CCC
[ENA]
¢þ
>WENV170675671
LDZP01000247
[LDZP] terrestrial metagenome; oil reservoir sample I1
112
186
+
Gly
CCC
[ENA]
¢þ
>WENV170717281
LSQX01030182
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7976
8050
+
Gly
CCC
[ENA]
¢þ
>WENV170719811
LSQX01129714
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1011
937
-
Gly
CCC
[ENA]
¢þ
>WENV170967106
MTKW01000257
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
22569
22643
+
Gly
CCC
[ENA]
¢þ
>WENV170968487
MTKW01010070
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5230
5156
-
Gly
CCC
[ENA]
¢þ
>WENV170969472
MTKW01029648
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1491
1417
-
Gly
CCC
[ENA]
¢þ
>C191108097
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
461472
461546
+
Gly
CCC
-
¡û
>W09100968
AADT03000086
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
218
144
-
Gly
CCC
[ENA]
¡û
>W09133558
ACPF01000109
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
13
87
+
Gly
CCC
[ENA]
¡û
>W09134141
ACQZ01000022
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
808
882
+
Gly
CCC
[ENA]
¡û
>W09135891
ACXP01000059
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
3983
3909
-
Gly
CCC
[ENA]
¡û
>C151045285
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
63078
63152
+
Gly
CCC
[Ensembl]
¡û
>W10105962
ACXY01000036
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
18927
18853
-
Gly
CCC
[ENA]
¡û
>W10120492
ADXD01000032
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
27821
27747
-
Gly
CCC
[ENA]
¡û
>W11108285
ACXY01000036
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
18927
18853
-
Gly
CCC
[ENA]
¡û
>W1511275112
JOOI01000002
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
385370
385296
-
Gly
CCC
[ENA]
¡û
>C11122489
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
2248841
2248767
-
Gly
CCC
[Ensembl]
¡û
>C11122691
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
49117
49191
+
Gly
CCC
[Ensembl]
¡û
>C11123222
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
70835
70909
+
Gly
CCC
[Ensembl]
¡û
>W11127101
ADXD01000032
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
27821
27747
-
Gly
CCC
[ENA]
¡û
>W11152651
AEYS01000010
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
6880
6806
-
Gly
CCC
[ENA]
¡û
>C121007612
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
659996
660070
+
Gly
CCC
[Ensembl]
¡û
>W121068096
AJUD01000008
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
337618
337692
+
Gly
CCC
[ENA]
¡û
>W1610612303
LGEO01000084
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
112
186
+
Gly
CCC
[ENA]
¡û
>W1710583328
FQUR01000029
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
406
480
+
Gly
CCC
[ENA]
¡û
>W1710733809
LGEO01000084
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
112
186
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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