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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343150 (29 seq.)
>C171046493
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
5852748
5852820
+
Glu
CTC
-
¡û
>WENV180019788
FTCO01000484
[FTCO] metagenome; soil
3372
3445
+
Glu
CTC
[ENA]
¢þ
>WENV180028016
FTIZ01497300
[FTIZ] metagenome; soil
680
607
-
Glu
CTC
[ENA]
¢þ
>C08008954
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
3792296
3792225
-
Glu
CTC
[Ensembl]
¡û
>WENV183705361
PDWI01001434
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
20296
20222
-
Glu
CTC
[ENA]
¢þ
>WENV170654263
JRYK01050055
[JRYK] activated sludge metagenome; activated biomass of a wastewaster treatment plant treating hydrocarbon contaminated
156
82
-
Glu
CTC
[ENA]
¢þ
>C181012522
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
4258585
4258511
-
Glu
CTC
-
¡û
>C191010044
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
3216947
3216873
-
Glu
CTC
-
¡û
>C191010045
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
3216665
3216591
-
Glu
CTC
-
¡û
>C191010103
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
4835204
4835130
-
Glu
CTC
-
¡û
>W1610048982
BBEO01003361
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
304
230
-
Glu
CTC
[ENA]
¡û
>C131010790
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
4822917
4822843
-
Glu
CTC
[Ensembl]
¡û
>W1610520382
JELX01001633
Myxococcota
Sorangium cellulosum [JELX]
2742
2816
+
Glu
CTC
[ENA]
¡û
>W1610520425
JELY01001013
Myxococcota
Sorangium cellulosum [JELY]
945
871
-
Glu
CTC
[ENA]
¡û
>W1610520510
JELZ01002746
Myxococcota
Sorangium cellulosum [JELZ]
4899
4825
-
Glu
CTC
[ENA]
¡û
>W1610520522
JEMA01000363
Myxococcota
Sorangium cellulosum [JEMA]
4236
4162
-
Glu
CTC
[ENA]
¡û
>W1610520605
JEMB01003266
Myxococcota
Sorangium cellulosum [JEMB]
5132
5206
+
Glu
CTC
[ENA]
¡û
>W1610520632
JEMC01001973
Myxococcota
Sorangium cellulosum [JEMC]
1190
1116
-
Glu
CTC
[ENA]
¡û
>W1610520707
JEMD01002461
Myxococcota
Sorangium cellulosum [JEMD]
5874
5800
-
Glu
CTC
[ENA]
¡û
>W1610520744
JEME01002071
Myxococcota
Sorangium cellulosum [JEME]
4900
4826
-
Glu
CTC
[ENA]
¡û
>W1710045454
BBEO01003361
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
304
230
-
Glu
CTC
[ENA]
¡û
>W1710615860
JELX01001633
Myxococcota
Sorangium cellulosum [JELX]
2742
2816
+
Glu
CTC
[ENA]
¡û
>W1710615903
JELY01001013
Myxococcota
Sorangium cellulosum [JELY]
945
871
-
Glu
CTC
[ENA]
¡û
>W1710615988
JELZ01002746
Myxococcota
Sorangium cellulosum [JELZ]
4899
4825
-
Glu
CTC
[ENA]
¡û
>W1710616000
JEMA01000363
Myxococcota
Sorangium cellulosum [JEMA]
4236
4162
-
Glu
CTC
[ENA]
¡û
>W1710616083
JEMB01003266
Myxococcota
Sorangium cellulosum [JEMB]
5132
5206
+
Glu
CTC
[ENA]
¡û
>W1710616110
JEMC01001973
Myxococcota
Sorangium cellulosum [JEMC]
1190
1116
-
Glu
CTC
[ENA]
¡û
>W1710616185
JEMD01002461
Myxococcota
Sorangium cellulosum [JEMD]
5874
5800
-
Glu
CTC
[ENA]
¡û
>W1710616222
JEME01002071
Myxococcota
Sorangium cellulosum [JEME]
4900
4826
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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