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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3451 (74 seq.)
>W1711513296
MLFP01000010
Gammaproteobacteria
Pantoea rodasii [MLFP]
70701
70795
+
SeC(p)
TCA
[ENA]
¡û
>W1711513376
MLFR01000003
Gammaproteobacteria
Pantoea rwandensis [MLFR]
95544
95450
-
SeC(p)
TCA
[ENA]
¡û
>W1711513432
MLFS01000004
Gammaproteobacteria
Pantoea wallisii [MLFS]
44345
44439
+
SeC(p)
TCA
[ENA]
¡û
>W1711517227
MLJI01000001
Gammaproteobacteria
Pantoea cypripedii [MLJI]
15423
15329
-
SeC(p)
TCA
[ENA]
¡û
>W1712096112
NHZE01000009
Gammaproteobacteria
Pantoea sp. VS1 [NHZE]
95682
95588
-
SeC(p)
TCA
[ENA]
¡û
>WENV180310393
OBJT01000398
[OBJT] soil metagenome; soil
10418
10512
+
SeC
TCA
[ENA]
¢þ
>W141074774
ASZC01000006
Gammaproteobacteria
Pantoea sp. AS-PWVM4 [ASZC]
99529
99435
-
SeC(p)
TCA
[ENA]
¡û
>W141111641
AVSS01000005
Gammaproteobacteria
Pantoea dispersa EGD-AAK13 [AVSS]
64592
64686
+
SeC(p)
TCA
[ENA]
¡û
>WENV182613476
OJKA01000628
[OJKA] metagenome; faeces
590
684
+
SeC
TCA
[ENA]
¢þ
>WENV170000469
AEWW01039273
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
391
485
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170022604
BCQK01025782
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
218
312
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170700160
LIDZ01004299
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
27588
27682
+
SeC(p)
TCA
[ENA]
¢þ
>C191155845
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
1294185
1294091
-
Sec
TCA
-
¡û
>C191175058
CP040095
Gammaproteobacteria
Pantoea sp. SO10 [CP040095]
45111
45017
-
Sec
TCA
-
¡û
>W1910760305
MNCH01000005
Gammaproteobacteria
Erwinia sp. OLSSP12 [MNCH]
7140
7234
+
Sec
TCA
[ENA]
¡û
>W1910760814
MNKW01000018
Gammaproteobacteria
Erwinia sp. OLCASP19 [MNKW]
7079
7173
+
Sec
TCA
[ENA]
¡û
>W1910760887
MNKX01000017
Gammaproteobacteria
Erwinia sp. OLMTSP26 [MNKX]
7079
7173
+
Sec
TCA
[ENA]
¡û
>W1910760952
MNKY01000016
Gammaproteobacteria
Erwinia sp. OLMDSP33 [MNKY]
7079
7173
+
Sec
TCA
[ENA]
¡û
>W1910768748
MOMA01000025
Gammaproteobacteria
Erwinia sp. OLTSP20 [MOMA]
4828
4922
+
Sec
TCA
[ENA]
¡û
>W1910768808
MOMB01000049
Gammaproteobacteria
Erwinia sp. OLFS4 [MOMB]
7140
7234
+
Sec
TCA
[ENA]
¡û
>W1910804005
MTCI01000015
Gammaproteobacteria
Erwinia sp. OAMSP11 [MTCI]
6276
6370
+
Sec
TCA
[ENA]
¡û
>W1911492793
OBEC01000006
Gammaproteobacteria
Pantoea sp. GL120224-02 [OBEC]
90497
90403
-
Sec
TCA
[ENA]
¡û
>W1911496824
OCMY01000001
Gammaproteobacteria
Pantoea floridensis JKS000234 [OCMY]
1799181
1799275
+
Sec
TCA
[ENA]
¡û
>W1911568630
PCQJ01000005
Gammaproteobacteria
Erwinia billingiae MYb121 [PCQJ]
356401
356307
-
Sec
TCA
[ENA]
¡û
>W1810071416
PEES01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000233 [PEES]
3538509
3538603
+
Sec
TCA
[ENA]
¡û
>W1810147236
PIQI01000014
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
186090
186184
+
Sec
TCA
[ENA]
¡û
>W1810177778
PJRT01000031
Gammaproteobacteria
Pantoea endophytica 596 [PJRT]
186370
186464
+
Sec
TCA
[ENA]
¡û
>W1810226517
POWM01000009
Gammaproteobacteria
Pantoea sp. ICBG 985 [POWM]
64698
64792
+
Sec
TCA
[ENA]
¡û
>W1810226588
POWN01000010
Gammaproteobacteria
Pantoea sp. ICBG 828 [POWN]
70627
70533
-
Sec
TCA
[ENA]
¡û
>W1810676976
QKMJ01000009
Gammaproteobacteria
Pantoea sp. AG1095 [QKMJ]
24102
24008
-
Sec
TCA
[ENA]
¡û
>C151051530
CP009454
Gammaproteobacteria
Pantoea rwandensis ND04 [CP009454]
462150
462244
+
SeC
TCA
[Ensembl]
¡û
>W10106242
ACYJ01000014
Gammaproteobacteria
Pantoea sp. At-9b [ACYJ]
98656
98562
-
SeC
TCA
[ENA]
¡û
>W1510092996
CEFO01000004
Gammaproteobacteria
Enterobacter ludwigii EnVs6 [CEFO]
448694
448600
-
SeC
TCA
[ENA]
¡û
>W1510093118
CEFQ01000003
Gammaproteobacteria
Enterobacter ludwigii EnVs2 [CEFQ]
170683
170777
+
SeC
TCA
[ENA]
¡û
>W1510093194
CEFR01000005
Gammaproteobacteria
Enterobacter ludwigii LecVs2 [CEFR]
176647
176741
+
SeC
TCA
[ENA]
¡û
>WENV11100827
AEWW01039273
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
391
485
+
SeC(p)
TCA
[ENA]
¡û
>W11108565
ACYJ01000014
Gammaproteobacteria
Pantoea sp. At-9b [ACYJ]
98656
98562
-
SeC(p)
TCA
[ENA]
¡û
>C11116752
CP002433
Gammaproteobacteria
Pantoea sp. At-9b [CP002433]
50134
50040
-
SeC
TCA
[Ensembl]
¡û
>W1511356745
JRUP01000038
Gammaproteobacteria
Enterobacter cancerogenus M004 [JRUP]
9991
10085
+
SeC
TCA
[ENA]
¡û
>W1511402145
JTJJ01000015
Gammaproteobacteria
Pantoea rodasii ND03 [JTJJ]
6277
6183
-
SeC
TCA
[ENA]
¡û
>W1511547673
JZRD01000016
Gammaproteobacteria
Pantoea sp. SM3 [JZRD]
127923
128017
+
SeC
TCA
[ENA]
¡û
>W1511547937
JZRH01000031
Gammaproteobacteria
Pantoea sp. BL1 [JZRH]
89845
89751
-
SeC
TCA
[ENA]
¡û
>W1511699736
LGIS01000025
Gammaproteobacteria
Pantoea sp. RIT-PI-b [LGIS]
36717
36811
+
SeC
TCA
[ENA]
¡û
>C121016310
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
4946658
4946564
-
SeC
TCA
[Ensembl]
¡û
>C161035372
CP011427
Gammaproteobacteria
Pantoea vagans ND02 [CP011427]
4042418
4042512
+
SeC(p)
TCA
[Ensembl]
¡û
>W1610053116
BBOB01000012
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
24350
24444
+
SeC(p)
TCA
[ENA]
¡û
>W1610053221
BBOC01000062
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
25365
25271
-
SeC(p)
TCA
[ENA]
¡û
>W1610053281
BBOD01000024
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
62854
62948
+
SeC(p)
TCA
[ENA]
¡û
>W121084898
AKIU01000090
Gammaproteobacteria
Pantoea sp. GM01 [AKIU]
44272
44366
+
SeC
TCA
[ENA]
¡û
>W1610591089
LDRY01000009
Gammaproteobacteria
Pantoea dispersa [LDRY]
64646
64740
+
SeC(p)
TCA
[ENA]
¡û
>W1610591160
LDRZ01000008
Gammaproteobacteria
Pantoea dispersa [LDRZ]
64563
64657
+
SeC(p)
TCA
[ENA]
¡û
>W1610591260
LDSA01000031
Gammaproteobacteria
Pantoea dispersa [LDSA]
117863
117769
-
SeC(p)
TCA
[ENA]
¡û
>W1610591314
LDSB01000025
Gammaproteobacteria
Pantoea dispersa [LDSB]
118094
118000
-
SeC(p)
TCA
[ENA]
¡û
>W1610591360
LDSC01000008
Gammaproteobacteria
Pantoea dispersa [LDSC]
106661
106567
-
SeC(p)
TCA
[ENA]
¡û
>W1610591395
LDSD01000002
Gammaproteobacteria
Pantoea dispersa [LDSD]
97261
97167
-
SeC(p)
TCA
[ENA]
¡û
>W1610591481
LDSE01000012
Gammaproteobacteria
Pantoea dispersa [LDSE]
7412
7318
-
SeC(p)
TCA
[ENA]
¡û
>W1610591529
LDSF01000004
Gammaproteobacteria
Pantoea dispersa [LDSF]
97373
97279
-
SeC(p)
TCA
[ENA]
¡û
>W1610591622
LDSG01000010
Gammaproteobacteria
Pantoea dispersa [LDSG]
64575
64669
+
SeC(p)
TCA
[ENA]
¡û
>W1710049494
BBOB01000012
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
24350
24444
+
SeC(p)
TCA
[ENA]
¡û
>W1710049599
BBOC01000062
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
25365
25271
-
SeC(p)
TCA
[ENA]
¡û
>W1710049659
BBOD01000024
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
62854
62948
+
SeC(p)
TCA
[ENA]
¡û
>W1710524412
FNIS01000008
Gammaproteobacteria
Shigella sonnei [FNIS]
167218
167312
+
SeC(p)
TCA
[ENA]
¡û
>W1710566695
FOSD01000009
Gammaproteobacteria
Pantoea symbiotica YR512 [FOSD]
183386
183480
+
SeC(p)
TCA
[ENA]
¡û
>W1710578729
FPBU01000009
Gammaproteobacteria
Pantoea sp. YR525 [FPBU]
183386
183480
+
SeC(p)
TCA
[ENA]
¡û
>W1710710369
LDRY01000009
Gammaproteobacteria
Pantoea dispersa [LDRY]
64646
64740
+
SeC(p)
TCA
[ENA]
¡û
>W1710710440
LDRZ01000008
Gammaproteobacteria
Pantoea dispersa [LDRZ]
64563
64657
+
SeC(p)
TCA
[ENA]
¡û
>W1710710540
LDSA01000031
Gammaproteobacteria
Pantoea dispersa [LDSA]
117863
117769
-
SeC(p)
TCA
[ENA]
¡û
>W1710710594
LDSB01000025
Gammaproteobacteria
Pantoea dispersa [LDSB]
118094
118000
-
SeC(p)
TCA
[ENA]
¡û
>W1710710640
LDSC01000008
Gammaproteobacteria
Pantoea dispersa [LDSC]
106661
106567
-
SeC(p)
TCA
[ENA]
¡û
>W1710710675
LDSD01000002
Gammaproteobacteria
Pantoea dispersa [LDSD]
97261
97167
-
SeC(p)
TCA
[ENA]
¡û
>W1710710761
LDSE01000012
Gammaproteobacteria
Pantoea dispersa [LDSE]
7412
7318
-
SeC(p)
TCA
[ENA]
¡û
>W1710710809
LDSF01000004
Gammaproteobacteria
Pantoea dispersa [LDSF]
97373
97279
-
SeC(p)
TCA
[ENA]
¡û
>W1710710902
LDSG01000010
Gammaproteobacteria
Pantoea dispersa [LDSG]
64575
64669
+
SeC(p)
TCA
[ENA]
¡û
>W1710754822
LHXI01000003
Gammaproteobacteria
Erwinia billingiae [LHXI]
175836
175930
+
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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