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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.345176 (95 seq.)
>W131206151
ATFL01000014
Actinomycetota
Propionibacterium sp. oral taxon 192 oral taxon 192 str. F0372 [ATFL]
456409
456335
-
Arg
CCG
[ENA]
¡û
>W131230055
AUHH01000013
Actinomycetota
Granulicoccus phenolivorans DSM 17626 [AUHH]
20446
20372
-
Arg
CCG
[ENA]
¡û
>W1711334201
MBQD01000020
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
147690
147618
-
Arg
CCG
[ENA]
¡û
>W1711717998
MTHC01000001
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
304180
304106
-
Arg
CCG
[ENA]
¡û
>C171091479
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
298061
298133
+
Arg
CCG
-
¡û
>C171096198
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
1462518
1462592
+
Arg
CCG
-
¡û
>C171096243
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
1411151
1411225
+
Arg
CCG
-
¡û
>C171096303
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
3230602
3230528
-
Arg
CCG
-
¡û
>C171130967
LT706985
Actinomycetota
Vaginimicrobium propionicum Marseille-P3275 [LT706985]
338457
338385
-
Arg
CCG
-
¡û
>WENV180094612
MTBK01017897
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1110
1184
+
Arg
CCG
[ENA]
¢þ
>WENV180697985
ODDE01017163
[ODDE] human metagenome; G_DNA_Supragingival plaque
631
703
+
Arg
CCG
[ENA]
¢þ
>WENV180727630
ODGU01008699
[ODGU] human metagenome; G_DNA_Supragingival plaque
619
691
+
Arg
CCG
[ENA]
¢þ
>WENV180733850
ODGZ01001031
[ODGZ] human metagenome; G_DNA_Supragingival plaque
10240
10168
-
Arg
CCG
[ENA]
¢þ
>WENV180733981
ODGZ01001752
[ODGZ] human metagenome; G_DNA_Supragingival plaque
4918
4846
-
Arg
CCG
[ENA]
¢þ
>WENV180735610
ODHB01000114
[ODHB] human metagenome; G_DNA_Supragingival plaque
23296
23368
+
Arg
CCG
[ENA]
¢þ
>WENV180749815
ODHS01000034
[ODHS] human metagenome; G_DNA_Supragingival plaque
67806
67734
-
Arg
CCG
[ENA]
¢þ
>WENV180777181
ODIL01000277
[ODIL] human metagenome; G_DNA_Supragingival plaque
12169
12097
-
Arg
CCG
[ENA]
¢þ
>WENV180781663
ODIP01001696
[ODIP] human metagenome; G_DNA_Supragingival plaque
2130
2202
+
Arg
CCG
[ENA]
¢þ
>WENV180787982
ODIS01024262
[ODIS] human metagenome; G_DNA_Supragingival plaque
189
261
+
Arg
CCG
[ENA]
¢þ
>WENV180801250
ODJD01016287
[ODJD] human metagenome; G_DNA_Supragingival plaque
760
832
+
Arg
CCG
[ENA]
¢þ
>WENV180804356
ODJG01001950
[ODJG] human metagenome; G_DNA_Supragingival plaque
1004
1076
+
Arg
CCG
[ENA]
¢þ
>WENV180804418
ODJG01002627
[ODJG] human metagenome; G_DNA_Supragingival plaque
3971
3899
-
Arg
CCG
[ENA]
¢þ
>WENV180813637
ODJO01001524
[ODJO] human metagenome; G_DNA_Supragingival plaque
10721
10649
-
Arg
CCG
[ENA]
¢þ
>WENV180823257
ODJW01012531
[ODJW] human metagenome; G_DNA_Supragingival plaque
1428
1500
+
Arg
CCG
[ENA]
¢þ
>WENV180824429
ODJX01006623
[ODJX] human metagenome; G_DNA_Supragingival plaque
1494
1566
+
Arg
CCG
[ENA]
¢þ
>WENV180832835
ODKC01005383
[ODKC] human metagenome; G_DNA_Supragingival plaque
3887
3815
-
Arg
CCG
[ENA]
¢þ
>WENV180834039
ODKD01002148
[ODKD] human metagenome; G_DNA_Supragingival plaque
4842
4770
-
Arg
CCG
[ENA]
¢þ
>WENV180836131
ODKE01046633
[ODKE] human metagenome; G_DNA_Supragingival plaque
256
328
+
Arg
CCG
[ENA]
¢þ
>WENV180844186
ODKN01045980
[ODKN] human metagenome; G_DNA_Supragingival plaque
318
390
+
Arg
CCG
[ENA]
¢þ
>WENV180847410
ODKT01078924
[ODKT] human metagenome; G_DNA_Supragingival plaque
386
314
-
Arg
CCG
[ENA]
¢þ
>WENV180859715
ODLD01002916
[ODLD] human metagenome; G_DNA_Supragingival plaque
1556
1484
-
Arg
CCG
[ENA]
¢þ
>WENV180888928
ODMN01006479
[ODMN] human metagenome; G_DNA_Supragingival plaque
1317
1245
-
Arg
CCG
[ENA]
¢þ
>WENV180922974
ODTJ01024941
[ODTJ] human metagenome; G_DNA_Supragingival plaque
338
266
-
Arg
CCG
[ENA]
¢þ
>WENV180924288
ODTK01002634
[ODTK] human metagenome; G_DNA_Supragingival plaque
1553
1481
-
Arg
CCG
[ENA]
¢þ
>WENV180927465
ODTM01000704
[ODTM] human metagenome; G_DNA_Supragingival plaque
4481
4553
+
Arg
CCG
[ENA]
¢þ
>WENV180927522
ODTM01000997
[ODTM] human metagenome; G_DNA_Supragingival plaque
3288
3360
+
Arg
CCG
[ENA]
¢þ
>WENV180927992
ODTM01009227
[ODTM] human metagenome; G_DNA_Supragingival plaque
890
962
+
Arg
CCG
[ENA]
¢þ
>WENV180933279
ODTR01000008
[ODTR] human metagenome; G_DNA_Supragingival plaque
128079
128007
-
Arg
CCG
[ENA]
¢þ
>WENV180934414
ODTS01000028
[ODTS] human metagenome; G_DNA_Subgingival plaque
33581
33509
-
Arg
CCG
[ENA]
¢þ
>WENV180938362
ODTX01001601
[ODTX] human metagenome; G_DNA_Supragingival plaque
1570
1498
-
Arg
CCG
[ENA]
¢þ
>WENV180938527
ODTX01002696
[ODTX] human metagenome; G_DNA_Supragingival plaque
3167
3239
+
Arg
CCG
[ENA]
¢þ
>WENV180944155
ODUC01009229
[ODUC] human metagenome; G_DNA_Supragingival plaque
4171
4099
-
Arg
CCG
[ENA]
¢þ
>WENV180958137
ODUL01000587
[ODUL] human metagenome; G_DNA_Supragingival plaque
2597
2669
+
Arg
CCG
[ENA]
¢þ
>WENV180963892
ODUO01000019
[ODUO] human metagenome; G_DNA_Supragingival plaque
41914
41842
-
Arg
CCG
[ENA]
¢þ
>WENV180972957
ODUW01000596
[ODUW] human metagenome; G_DNA_Supragingival plaque
3772
3700
-
Arg
CCG
[ENA]
¢þ
>WENV180973315
ODUW01003290
[ODUW] human metagenome; G_DNA_Supragingival plaque
3769
3697
-
Arg
CCG
[ENA]
¢þ
>WENV180973383
ODUW01004519
[ODUW] human metagenome; G_DNA_Supragingival plaque
5575
5647
+
Arg
CCG
[ENA]
¢þ
>WENV180980426
ODVE01000149
[ODVE] human metagenome; G_DNA_Supragingival plaque
13780
13708
-
Arg
CCG
[ENA]
¢þ
>WENV180982559
ODVF01000098
[ODVF] human metagenome; G_DNA_Supragingival plaque
9060
9132
+
Arg
CCG
[ENA]
¢þ
>WENV180987410
ODVK01021711
[ODVK] human metagenome; G_DNA_Supragingival plaque
96
24
-
Arg
CCG
[ENA]
¢þ
>WENV181002270
ODVX01000155
[ODVX] human metagenome; G_DNA_Supragingival plaque
14136
14208
+
Arg
CCG
[ENA]
¢þ
>WENV181007737
ODWE01000558
[ODWE] human metagenome; G_DNA_Supragingival plaque
9221
9293
+
Arg
CCG
[ENA]
¢þ
>WENV181008018
ODWE01001515
[ODWE] human metagenome; G_DNA_Supragingival plaque
4825
4753
-
Arg
CCG
[ENA]
¢þ
>WENV181008657
ODWE01010151
[ODWE] human metagenome; G_DNA_Supragingival plaque
1913
1985
+
Arg
CCG
[ENA]
¢þ
>WENV181020285
ODWU01101159
[ODWU] human metagenome; G_DNA_Supragingival plaque
250
322
+
Arg
CCG
[ENA]
¢þ
>WENV181030057
ODXF01023956
[ODXF] human metagenome; G_DNA_Supragingival plaque
52
124
+
Arg
CCG
[ENA]
¢þ
>WENV181049551
ODYD01000575
[ODYD] human metagenome; G_DNA_Supragingival plaque
5803
5875
+
Arg
CCG
[ENA]
¢þ
>WENV181050978
ODYD01121444
[ODYD] human metagenome; G_DNA_Supragingival plaque
75
3
-
Arg
CCG
[ENA]
¢þ
>WENV181063159
ODYP01000146
[ODYP] human metagenome; G_DNA_Supragingival plaque
7129
7201
+
Arg
CCG
[ENA]
¢þ
>WENV181067763
ODZI01050644
[ODZI] human metagenome; G_DNA_Supragingival plaque
154
226
+
Arg
CCG
[ENA]
¢þ
>WENV181070616
OEAE01004236
[OEAE] human metagenome; G_DNA_Supragingival plaque
9
81
+
Arg
CCG
[ENA]
¢þ
>WENV181075733
OEAP01000221
[OEAP] human metagenome; G_DNA_Supragingival plaque
11975
11903
-
Arg
CCG
[ENA]
¢þ
>WENV181078445
OEAS01000070
[OEAS] human metagenome; G_DNA_Supragingival plaque
36165
36093
-
Arg
CCG
[ENA]
¢þ
>WENV181082496
OEAV01000016
[OEAV] human metagenome; G_DNA_Supragingival plaque
105031
104959
-
Arg
CCG
[ENA]
¢þ
>WENV181090920
OEBC01006392
[OEBC] human metagenome; G_DNA_Supragingival plaque
4013
4085
+
Arg
CCG
[ENA]
¢þ
>WENV181122176
OEFL01115182
[OEFL] human metagenome; G_DNA_Supragingival plaque
152
224
+
Arg
CCG
[ENA]
¢þ
>WENV181146359
OEHQ01003746
[OEHQ] human metagenome; G_DNA_Supragingival plaque
4519
4591
+
Arg
CCG
[ENA]
¢þ
>WENV181152604
OEIA01003060
[OEIA] human metagenome; G_DNA_Supragingival plaque
5540
5612
+
Arg
CCG
[ENA]
¢þ
>WENV181155964
OEIE01001125
[OEIE] human metagenome; G_DNA_Supragingival plaque
4090
4018
-
Arg
CCG
[ENA]
¢þ
>WENV181161168
OEIK01194138
[OEIK] human metagenome; G_DNA_Supragingival plaque
163
235
+
Arg
CCG
[ENA]
¢þ
>WENV181177277
OEJS01000369
[OEJS] human metagenome; G_DNA_Supragingival plaque
11976
11904
-
Arg
CCG
[ENA]
¢þ
>WENV181179302
OEJT01003026
[OEJT] human metagenome; G_DNA_Supragingival plaque
1565
1493
-
Arg
CCG
[ENA]
¢þ
>WENV181181639
OEJV01000032
[OEJV] human metagenome; G_DNA_Supragingival plaque
65208
65136
-
Arg
CCG
[ENA]
¢þ
>WENV183706822
PDWI01005618
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16070
15996
-
Arg
CCG
[ENA]
¢þ
>WENV183709157
PDWI01024691
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5610
5684
+
Arg
CCG
[ENA]
¢þ
>WENV183717175
PDWJ01000539
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
73481
73555
+
Arg
CCG
[ENA]
¢þ
>WENV170691607
LFRM01405535
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2858
2784
-
Arg
CCG
[ENA]
¢þ
>C181232176
LT996886
Actinomycetota
Tessaracoccus timonensis Marseille-P59951 [LT996886]
2318581
2318507
-
Arg
CCG
-
¡û
>C191173856
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
1517977
1517905
-
Arg
CCG
-
¡û
>C191210871
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
1512925
1512853
-
Arg
CCG
-
¡û
>C191214586
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
1505818
1505746
-
Arg
CCG
-
¡û
>W141557450
JHVD01000020
Actinomycetota
Propionibacteriaceae bacterium P6A17 [JHVD]
36475
36549
+
Arg
CCG
[ENA]
¡û
>W1911076236
NMVI01000018
Actinomycetota
Parenemella sanctibonifatiensis NML 160184 [NMVI]
339681
339753
+
Arg
CCG
[ENA]
¡û
>W1911076282
NMVJ01000006
Actinomycetota
Parenemella sanctibonifatiensis NML 150081 [NMVJ]
204385
204313
-
Arg
CCG
[ENA]
¡û
>W1911575861
PDJP01000001
Actinomycetota
Propionibacteriaceae bacterium ES.041 [PDJP]
2544077
2544151
+
Arg
CCG
[ENA]
¡û
>W1510061416
CCYJ01000020
Actinomycetota
Tessaracoccus massiliensis SIT6 [CCYJ]
578589
578663
+
Arg
CCG
[ENA]
¡û
>C121002963
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
1530316
1530244
-
Arg
CCG
[Ensembl]
¡û
>W1610068015
BCQZ01000011
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
20354
20280
-
Arg
CCG
[ENA]
¡û
>W1610074469
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
680089
680161
+
Arg
CCG
[ENA]
¡û
>W1611066168
MBQD01000020
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
147690
147618
-
Arg
CCG
[ENA]
¡û
>W1710065388
BCQZ01000011
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
20354
20280
-
Arg
CCG
[ENA]
¡û
>W1710071587
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
680089
680161
+
Arg
CCG
[ENA]
¡û
>W1710521722
FNGP01000004
Actinomycetota
Tessaracoccus oleiagri [FNGP]
297920
297848
-
Arg
CCG
[ENA]
¡û
>W1710531795
FNPU01000010
Actinomycetota
Tessaracoccus flavus [FNPU]
102240
102166
-
Arg
CCG
[ENA]
¡û
>W1710588329
FQZG01000026
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
28012
27938
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK