This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37543 (28 seq.)
>A171000879
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
461701
461613
-
Ser
GGA
-
¡û
>A171001022
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1639662
1639577
-
Ser
GGA
-
¡û
>A171001283
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
74576
74488
-
Ser
GGA
-
¡û
>A171001502
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
631282
631194
-
Ser
GGA
-
¡û
>A171004482
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1575098
1575010
-
Ser
GGA
-
¡û
>WENV180275371
OBHT01016060
[OBHT] metagenome; hydrothermal vent
86
174
+
Ser
GGA
[ENA]
¢þ
>WENV180287907
OBIL01012527
[OBIL] metagenome; hydrothermal vent
439
351
-
Ser
GGA
[ENA]
¢þ
>WENV180332460
OBLD01012645
[OBLD] metagenome; water
453
365
-
Ser
GGA
[ENA]
¢þ
>WENV181207157
OFAY01002161
[OFAY] metagenome; hydrothermal vent
179
267
+
Ser
GGA
[ENA]
¢þ
>WENV181208460
OFBB01013901
[OFBB] metagenome; hydrothermal vent
350
438
+
Ser
GGA
[ENA]
¢þ
>WENV181208752
OFBC01003858
[OFBC] metagenome; hydrothermal vent
942
854
-
Ser
GGA
[ENA]
¢þ
>WENV181212884
OFBU01000750
[OFBU] metagenome; hydrothermal vent
2560
2472
-
Ser
GGA
[ENA]
¢þ
>WENV181213355
OFBV01000752
[OFBV] metagenome; hydrothermal vent
417
505
+
Ser
GGA
[ENA]
¢þ
>WENV181213919
OFBW01002412
[OFBW] metagenome; hydrothermal vent
85
173
+
Ser
GGA
[ENA]
¢þ
>WENV181214454
OFBY01000301
[OFBY] metagenome; hydrothermal vent
1706
1794
+
Ser
GGA
[ENA]
¢þ
>WENV181214966
OFBZ01000323
[OFBZ] metagenome; hydrothermal vent
1902
1814
-
Ser
GGA
[ENA]
¢þ
>WENV181215472
OFCA01000609
[OFCA] metagenome; hydrothermal vent
3196
3108
-
Ser
GGA
[ENA]
¢þ
>WENV181215595
OFCA01004123
[OFCA] metagenome; hydrothermal vent
1521
1433
-
Ser
GGA
[ENA]
¢þ
>WENV181215947
OFCB01000291
[OFCB] metagenome; hydrothermal vent
1214
1126
-
Ser
GGA
[ENA]
¢þ
>WENV181216533
OFCC01002233
[OFCC] metagenome; hydrothermal vent
99
187
+
Ser
GGA
[ENA]
¢þ
>WENV181223853
OFDD01001310
[OFDD] metagenome; hydrothermal vent
2395
2307
-
Ser
GGA
[ENA]
¢þ
>WENV181225448
OFDI01001819
[OFDI] metagenome; hydrothermal vent
338
426
+
Ser
GGA
[ENA]
¢þ
>At0922
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
186978
187066
+
Ser
GGA
[Ensembl]
¡û
>W1610001114
ACQW01000004
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
64517
64429
-
Ser
GGA
[ENA]
¡û
>W1610001139
ACQY01000004
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
25666
25578
-
Ser
GGA
[ENA]
¡û
>W1610001541
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
579834
579922
+
Ser
GGA
[ENA]
¡û
>W1610001622
ADCA01000001
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
25103
25191
+
Ser
GGA
[ENA]
¡û
>W1610018656
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
431617
431529
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK