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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.378976 (39 seq.)
>W1711405557
MGBT01000118
Unclassified
Candidatus Rokubacteria bacterium GWA2_70_23 [MGBT]
2870
2944
+
Asn
GTT
[ENA]
¡û
>W1711405634
MGBV01000219
Unclassified
Candidatus Rokubacteria bacterium GWC2_70_16 [MGBV]
3373
3447
+
Asn
GTT
[ENA]
¡û
>W1711405651
MGBW01000050
Unclassified
Candidatus Rokubacteria bacterium GWC2_70_24 [MGBW]
13641
13567
-
Asn
GTT
[ENA]
¡û
>C025022
CP000448
Bacillota
Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 [CP000448]
1725340
1725266
-
Asn
GTT
[Ensembl]
¡û
>WENV180101415
OAOU01058849
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
177
105
-
Asn
GTT
[ENA]
¡û
>WENV181676129
OGOP01035883
[OGOP] human gut metagenome; faeces
457
531
+
Asn
GTT
[ENA]
¡û
>WENV170561091
CZCA01002803
[CZCA] anaerobic digester metagenome; anaerobic digester
1702
1776
+
Asn
GTT
[ENA]
¡û
>WENV170562984
CZCB01008330
[CZCB] anaerobic digester metagenome; anaerobic digester
6625
6551
-
Asn
GTT
[ENA]
¡û
>WENV170684373
LFRM01035135
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
111664
111738
+
Asn
GTT
[ENA]
¡û
>WENV170684389
LFRM01035478
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
26469
26543
+
Asn
GTT
[ENA]
¡û
>WENV170689815
LFRM01312966
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1567
1493
-
Asn
GTT
[ENA]
¡û
>WENV170690096
LFRM01325596
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
842
916
+
Asn
GTT
[ENA]
¡û
>WENV170715377
LNQE01001844
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
12370
12444
+
Asn
GTT
[ENA]
¡û
>WENV170717973
LSQX01056147
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1995
2069
+
Asn
GTT
[ENA]
¡û
>WENV170720863
LSQX01169373
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1145
1219
+
Asn
GTT
[ENA]
¡û
>WENV170722203
LSQX01221141
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
10158
10232
+
Asn
GTT
[ENA]
¡û
>WENV170724888
LSQX01322119
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
623
549
-
Asn
GTT
[ENA]
¡û
>WENV170725058
LSQX01329159
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
14789
14863
+
Asn
GTT
[ENA]
¡û
>WENV170726974
LSQX01400405
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1145
1219
+
Asn
GTT
[ENA]
¡û
>WENV170967246
MTKW01000574
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
32868
32942
+
Asn
GTT
[ENA]
¡û
>WENV170969209
MTKW01022619
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2306
2380
+
Asn
GTT
[ENA]
¡û
>W141702113
JMLG01000013
Bacillota
Desulfofundulus thermocisternus DSM 10259 [JMLG]
49284
49210
-
Asn
GTT
[ENA]
¡û
>W09103494
AAJG01000046
Bacillota
Syntrophomonas wolfei subsp. wolfei str. Goettingen [AAJG]
12991
12917
-
Asn
GTT
[ENA]
¡û
>W1910719785
MGCH01000119
Unclassified
Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_71_19 [MGCH]
7040
6966
-
Asn
GTT
[ENA]
¡û
>W2010528795
JAAOEF010000004
Bacillota
Desulfofundulus sp. TPOSR [JAAOEF]
320432
320358
-
Asn
GTT
[ENA]
¡û
>W2010853211
MGCH01000119
Unclassified
Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_71_19 [MGCH]
7040
6966
-
Asn
GTT
[ENA]
¡û
>W2011387302
RBWE01000001
Bacillota
Desulfofundulus sp. 435 [RBWE]
367923
367997
+
Asn
GTT
[ENA]
¡û
>W1510148674
CGIH01000044
Bacillota
Syntrophomonas zehnderi OL-4 [CGIH]
2345
2271
-
Asn
GTT
[ENA]
¡û
>C11107099
CP002770
Bacillota
Desulfofundulus kuznetsovii DSM 6115 [CP002770]
3198251
3198177
-
Asn
GTT
[Ensembl]
¡û
>W1610046200
BBCE01000001
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
10726
10652
-
Asn
GTT
[ENA]
¡û
>W1610053830
BBQT01000015
Bacillota
Syntrophomonas wolfei subsp. methylbutyratica [BBQT]
68519
68593
+
Asn
GTT
[ENA]
¡û
>W1610606171
LFSQ01000012
Bacillota
Syntrophomonas sp. DTU019 [LFSQ]
26469
26543
+
Asn
GTT
[ENA]
¡û
>W1610606200
LFSR01000004
Bacillota
Syntrophomonas sp. DTU018 [LFSR]
111664
111738
+
Asn
GTT
[ENA]
¡û
>W1710042996
BBCE01000001
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
10726
10652
-
Asn
GTT
[ENA]
¡û
>W1710050208
BBQT01000015
Bacillota
Syntrophomonas wolfei subsp. methylbutyratica [BBQT]
68519
68593
+
Asn
GTT
[ENA]
¡û
>W1710583535
FQUW01000018
Bacillota
Desulfofundulus australicus DSM 11792 [FQUW]
46688
46614
-
Asn
GTT
[ENA]
¡û
>W1710588585
FQZM01000038
Bacillota
Desulfofundulus thermosubterraneus DSM 16057 [FQZM]
32349
32423
+
Asn
GTT
[ENA]
¡û
>W1710727458
LFSQ01000012
Bacillota
Syntrophomonas sp. DTU019 [LFSQ]
26469
26543
+
Asn
GTT
[ENA]
¡û
>W1710727487
LFSR01000004
Bacillota
Syntrophomonas sp. DTU018 [LFSR]
111664
111738
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK