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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380730 (72 seq.)
>W1711069859
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
87254
87328
+
Glu
TTC
[ENA]
¡û
>W1711069883
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
94217
94291
+
Glu
TTC
[ENA]
¡û
>W1711069900
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1843398
1843472
+
Glu
TTC
[ENA]
¡û
>W1711069921
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1845236
1845310
+
Glu
TTC
[ENA]
¡û
>W1711069941
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1775666
1775592
-
Glu
TTC
[ENA]
¡û
>W1711409501
MGOT01000189
Bacillota
Clostridiales bacterium GWC2_40_7 [MGOT]
8920
8846
-
Glu
CTC
[ENA]
¡û
>WENV180098071
MTBK01226010
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
366
440
+
Glu
TTC
[ENA]
¡û
>WENV180098223
MTBK01234339
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
608
682
+
Glu
TTC
[ENA]
¡û
>WENV180098682
MTBK01261133
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
940
866
-
Glu
TTC
[ENA]
¡û
>WENV180926639
ODTL01016562
[ODTL] human metagenome; G_DNA_Stool
220
146
-
Glu
TTC
[ENA]
¡û
>WENV181230684
OFEK01002333
[OFEK] activated sludge metagenome; Anaerobic digester
459
385
-
Glu
TTC
[ENA]
¡û
>WENV181230760
OFEK01003094
[OFEK] activated sludge metagenome; Anaerobic digester
449
523
+
Glu
CTC
[ENA]
¡û
>WENV181231898
OFEK01083995
[OFEK] activated sludge metagenome; Anaerobic digester
343
417
+
Glu
TTC
[ENA]
¡û
>WENV182313458
OHXY01013231
[OHXY] human gut metagenome; feces
934
860
-
Glu
TTC
[ENA]
¡û
>WENV170561718
CZCA01022935
[CZCA] anaerobic digester metagenome; anaerobic digester
252
326
+
Glu
CTC
[ENA]
¡û
>WENV170562304
CZCB01002031
[CZCB] anaerobic digester metagenome; anaerobic digester
2102
2176
+
Glu
CTC
[ENA]
¡û
>WENV170562655
CZCB01004237
[CZCB] anaerobic digester metagenome; anaerobic digester
501
427
-
Glu
CTC
[ENA]
¡û
>WENV170674803
LCWY01004903
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
949
875
-
Glu
TTC
[ENA]
¡û
>WENV170686234
LFRM01133544
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
13612
13686
+
Glu
TTC
[ENA]
¡û
>WENV170690778
LFRM01360680
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
341
267
-
Glu
CTC
[ENA]
¡û
>WENV170690866
LFRM01366871
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
33227
33153
-
Glu
CTC
[ENA]
¡û
>WENV170717061
LSQX01023053
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
280
206
-
Glu
CTC
[ENA]
¡û
>WENV170719823
LSQX01130182
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
10656
10730
+
Glu
CTC
[ENA]
¡û
>WENV170720865
LSQX01169373
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1437
1511
+
Glu
TTC
[ENA]
¡û
>WENV170724890
LSQX01322119
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
330
256
-
Glu
TTC
[ENA]
¡û
>WENV170969428
MTKW01028545
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7184
7258
+
Glu
CTC
[ENA]
¡û
>WENV170970160
MTKW01055482
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1081
1007
-
Glu
CTC
[ENA]
¡û
>WENV170978134
MTKZ01041459
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
731
657
-
Glu
CTC
[ENA]
¡û
>WENV170979128
MTKZ01077184
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
816
742
-
Glu
CTC
[ENA]
¡û
>W1910884597
NEMB01000003
Bacillota
Hungateiclostridium saccincola A7 [NEMB]
3625299
3625225
-
Glu
TTC
[ENA]
¡û
>W1910884623
NEMB01000003
Bacillota
Hungateiclostridium saccincola A7 [NEMB]
496350
496276
-
Glu
TTC
[ENA]
¡û
>W2011182728
PDBW01000001
Bacillota
Ruminiclostridium thermocellum AD2 [PDBW]
294126
294200
+
Glu
TTC
[ENA]
¡û
>W2011182733
PDBW01000001
Bacillota
Ruminiclostridium thermocellum AD2 [PDBW]
732263
732337
+
Glu
TTC
[ENA]
¡û
>W2011455249
RLII01000006
Bacillota
Hungateiclostridium sp. N2K1 [RLII]
104630
104704
+
Glu
TTC
[ENA]
¡û
>W2011455276
RLII01000043
Bacillota
Hungateiclostridium sp. N2K1 [RLII]
156
230
+
Glu
TTC
[ENA]
¡û
>W2011627455
SMAL01000009
Bacillota
Natranaerovirga pectinivora DSM 24629 [SMAL]
113737
113666
-
Glu
TTC
[ENA]
¡û
>W2011627482
SMAL01000029
Bacillota
Natranaerovirga pectinivora DSM 24629 [SMAL]
24
96
+
Glu
TTC
[ENA]
¡û
>W2011634763
SMGQ01000002
Bacillota
Natranaerovirga hydrolytica DSM 24176 [SMGQ]
27977
27906
-
Glu
TTC
[ENA]
¡û
>W2011634778
SMGQ01000015
Bacillota
Natranaerovirga hydrolytica DSM 24176 [SMGQ]
183
254
+
Glu
TTC
[ENA]
¡û
>W2012086234
VLTH01000002
Bacillota
Hungateiclostridium alkalicellulosi DSM 17461 [VLTH]
2063127
2063053
-
Glu
TTC
[ENA]
¡û
>W2012086247
VLTH01000002
Bacillota
Hungateiclostridium alkalicellulosi DSM 17461 [VLTH]
70787
70713
-
Glu
TTC
[ENA]
¡û
>W2110358907
JADNRK010000011
Bacillota
Alkalibacter sp. M17 DMB [JADNRK]
9836
9762
-
Glu
TTC
[ENA]
¡û
>W2110358938
JADNRK010000055
Bacillota
Alkalibacter sp. M17 DMB [JADNRK]
2549
2475
-
Glu
TTC
[ENA]
¡û
>C211290920
CP071444
Bacillota
Alkalibacter sp. ES005 [CP071444]
1233251
1233177
-
Glu
TTC
-
¡û
>C211290929
CP071444
Bacillota
Alkalibacter sp. ES005 [CP071444]
494145
494071
-
Glu
TTC
-
¡û
>C231394991
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
525414
525488
+
Glu
TTC
-
¡û
>C241255792
CP124862
Bacillota
Petroclostridium sp. X23 [CP124862]
3745366
3745440
+
Glu
TTC
-
¡û
>C241255820
CP124862
Bacillota
Petroclostridium sp. X23 [CP124862]
1449273
1449199
-
Glu
TTC
-
¡û
>C241255838
CP124862
Bacillota
Petroclostridium sp. X23 [CP124862]
1327545
1327471
-
Glu
TTC
-
¡û
>C11106459
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
294031
294105
+
Glu
TTC
[Ensembl]
¡û
>C11106464
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
729838
729912
+
Glu
TTC
[Ensembl]
¡û
>C161060768
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
294126
294200
+
Glu
TTC
-
¡û
>C161060773
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
732263
732337
+
Glu
TTC
-
¡û
>W121084440
AKIF01000294
Bacillota
Alkalibacillus haloalkaliphilus C5 [AKIF]
266
195
-
Glu
TTC
[ENA]
¡û
>W121061316
AJGS01000065
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
142172
142098
-
Glu
TTC
[ENA]
¡û
>W121061325
AJGS01000075
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
17154
17228
+
Glu
TTC
[ENA]
¡û
>W1610046202
BBCE01000001
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
10381
10307
-
Glu
TTC
[ENA]
¡û
>W1610605166
LFRR01000031
Bacillota
Clostridiaceae bacterium DTU054 [LFRR]
3825
3899
+
Glu
TTC
[ENA]
¡û
>W1610605186
LFRR01000094
Bacillota
Clostridiaceae bacterium DTU054 [LFRR]
33227
33153
-
Glu
CTC
[ENA]
¡û
>W1610605328
LFRV01000050
Bacillota
Clostridiales bacterium DTU069 [LFRV]
127
201
+
Glu
TTC
[ENA]
¡û
>W1610605594
LFSC01000029
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
13612
13686
+
Glu
TTC
[ENA]
¡û
>W1610605994
LFSL01000154
Bacillota
Clostridiales bacterium DTU058 [LFSL]
60689
60763
+
Glu
TTC
[ENA]
¡û
>W1610606002
LFSL01000168
Bacillota
Clostridiales bacterium DTU058 [LFSL]
91969
92043
+
Glu
TTC
[ENA]
¡û
>W1610606399
LFSV01000175
Bacillota
Clostridiales bacterium DTU013 [LFSV]
341
267
-
Glu
CTC
[ENA]
¡û
>W1710042998
BBCE01000001
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
10381
10307
-
Glu
TTC
[ENA]
¡û
>W1710590735
FRBG01000011
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [FRBG]
36007
36081
+
Glu
TTC
[ENA]
¡û
>W1710726506
LFRR01000094
Bacillota
Clostridiaceae bacterium DTU054 [LFRR]
33227
33153
-
Glu
CTC
[ENA]
¡û
>W1710726648
LFRV01000050
Bacillota
Clostridiales bacterium DTU069 [LFRV]
127
201
+
Glu
TTC
[ENA]
¡û
>W1710726881
LFSC01000029
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
13612
13686
+
Glu
TTC
[ENA]
¡û
>W1710727281
LFSL01000154
Bacillota
Clostridiales bacterium DTU058 [LFSL]
60689
60763
+
Glu
TTC
[ENA]
¡û
>W1710727289
LFSL01000168
Bacillota
Clostridiales bacterium DTU058 [LFSL]
91969
92043
+
Glu
TTC
[ENA]
¡û
>W1710727686
LFSV01000175
Bacillota
Clostridiales bacterium DTU013 [LFSV]
341
267
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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