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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.383002 (64 seq.)
>C171000440
CP007121
Thermotogota
Thermosipho sp. 1070 [CP007121]
1095493
1095419
-
Glu
CTC
-
¡û
>C171001376
CP007389
Thermotogota
Thermosipho melanesiensis 431 [CP007389]
961124
961198
+
Glu
CTC
-
¡û
>C171002430
CP009471
Thermotogota
Marinitoga sp. 1137 [CP009471]
385222
385148
-
Glu
CTC
-
¡û
>C025691
CP000716
Thermotogota
Thermosipho melanesiensis BI429 [CP000716]
961018
961092
+
Glu
CTC
[Ensembl]
¡û
>w019759
AAUK01000035
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
13601
13525
-
Glu
CTC
[ENA]
¡û
>WENV180014055
FPIC01038718
[FPIC] soil metagenome; Soil
22234
22308
+
Glu
CTC
[ENA]
¡û
>WENV180014387
FQKF010002080
[FQKF] soil metagenome; Soil
28207
28281
+
Glu
CTC
[ENA]
¡û
>WENV180095106
MTBK01049193
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
756
830
+
Glu
CTC
[ENA]
¡û
>W141020299
AJIP01000019
Thermotogota
Thermosipho africanus H17ap60334 [AJIP]
26458
26384
-
Glu
CTC
[ENA]
¡û
>WENV181226205
OFDK01000204
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
15668
15594
-
Glu
CTC
[ENA]
¡û
>WENV181285334
OFGS01000004
[OFGS] hot springs metagenome; Water and soil
32198
32272
+
Glu
CTC
[ENA]
¡û
>WENV181409073
OGCH01045002
[OGCH] hot springs metagenome; hot springs
139
213
+
Glu
CTC
[ENA]
¡û
>C08004972
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
723775
723849
+
Glu
CTC
[Ensembl]
¡û
>WENV170668844
LAHQ01065077
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
531
457
-
Glu
CTC
[ENA]
¡û
>WENV170675725
LDZQ01000381
[LDZQ] terrestrial metagenome; oil reservoir sample I2
43727
43653
-
Glu
CTC
[ENA]
¡û
>WENV170676445
LDZR01002686
[LDZR] terrestrial metagenome; oil reservoir sample K2
43727
43653
-
Glu
CTC
[ENA]
¡û
>WENV170676949
LDZS01003355
[LDZS] terrestrial metagenome; oil reservoir sample K3
1711
1785
+
Glu
CTC
[ENA]
¡û
>WENV170779383
LZQN01004270
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
88
162
+
Glu
CTC
[ENA]
¡û
>W09113923
ABZD01000005
Thermotogota
Kosmotoga olearia TBF 19.5.1 [ABZD]
105096
105170
+
Glu
CTC
[ENA]
¡û
>W141778845
JONI01000004
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
126265
126191
-
Glu
CTC
[ENA]
¡û
>W1910128992
BHXD01000002
Thermotogota
Thermosipho globiformans JCM 15059 [BHXD]
40332
40258
-
Glu
CTC
[ENA]
¡û
>C141000387
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
2023819
2023893
+
Glu
CTC
-
¡û
>C09106804
CP001634
Thermotogota
Kosmotoga olearia TBF 19.5.1 [CP001634]
2229717
2229643
-
Glu
CTC
[Ensembl]
¡û
>C09110474
CP001185
Thermotogota
Thermosipho africanus TCF52B [CP001185]
1225968
1225894
-
Glu
CTC
[Ensembl]
¡û
>W1910990281
NKRG01000004
Thermotogota
Thermosipho africanus Ob7 [NKRG]
96957
96883
-
Glu
CTC
[ENA]
¡û
>W1810596002
QGGI01000003
Thermotogota
Oceanotoga teriensis DSM 24906 [QGGI]
148486
148412
-
Glu
CTC
[ENA]
¡û
>C151001637
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
1078168
1078242
+
Glu
CTC
-
¡û
>C151078454
CP011232
Thermotogota
Kosmotoga pacifica SLHLJ1 [CP011232]
112443
112517
+
Glu
CTC
[Ensembl]
¡û
>W2010081732
BHXD01000002
Thermotogota
Thermosipho globiformans JCM 15059 [BHXD]
40332
40258
-
Glu
CTC
[ENA]
¡û
>W2010699297
JACHEX010000001
Thermotogota
Thermosipho japonicus DSM 13481 [JACHEX]
632007
632081
+
Glu
CTC
[ENA]
¡û
>W2010769547
LBEZ01000003
Thermotogota
Marinitoga sp. 1135 [LBEZ]
82215
82141
-
Glu
CTC
[ENA]
¡û
>W2010769589
LBFA01000006
Thermotogota
Marinitoga sp. 1138 [LBFA]
13192
13118
-
Glu
CTC
[ENA]
¡û
>W2010769633
LBFB01000005
Thermotogota
Marinitoga sp. 1154 [LBFB]
62307
62381
+
Glu
CTC
[ENA]
¡û
>W2010782497
LNFY01000001
Thermotogota
Thermotoga sp. Ku-13t [LNFY]
136037
136111
+
Glu
CTC
[ENA]
¡û
>W2010782694
LNGG01000001
Thermotogota
Fervidobacterium sp. 2310opik-2 [LNGG]
83700
83626
-
Glu
CTC
[ENA]
¡û
>W2010782764
LNGH01000019
Thermotogota
Marinitoga sp. 38H-ov [LNGH]
8060
7986
-
Glu
CTC
[ENA]
¡û
>W2010995308
NKRG01000004
Thermotogota
Thermosipho africanus Ob7 [NKRG]
96957
96883
-
Glu
CTC
[ENA]
¡û
>W2011679407
SRME01000004
Thermotogota
Geotoga petraea HO-Geo1 [SRME]
149117
149043
-
Glu
CTC
[ENA]
¡û
>W2110459977
JAFBDI010000056
Thermotogota
Marinitoga litoralis DSM 21709 [JAFBDI]
7220
7146
-
Glu
CTC
[ENA]
¡û
>C211000490
AP018712
Thermotogota
Tepiditoga spiralis sy52 [AP018712]
124383
124309
-
Glu
CTC
-
¡û
>C211085173
CP050868
Thermotogota
Fervidobacterium pennivorans T [CP050868]
246434
246360
-
Glu
CTC
-
¡û
>C211291040
CP071446
Thermotogota
Thermosipho sp. JL129W03 [CP071446]
647220
647294
+
Glu
CTC
-
¡û
>W2110747222
LNGA01000023
Thermotogota
Thermosipho sp. 1244 [LNGA]
60613
60539
-
Glu
CTC
[ENA]
¡û
>C231516316
CP107547
Thermotogota
Oceanotoga sp. DSM 15011 [CP107547]
759780
759854
+
Glu
CTC
-
¡û
>W1511355421
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
756070
756144
+
Glu
CTC
[ENA]
¡û
>C121009809
CP003257
Thermotogota
Marinitoga piezophila KA3 [CP003257]
345684
345610
-
Glu
CTC
[Ensembl]
¡û
>C121009917
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
257185
257111
-
Glu
CTC
[Ensembl]
¡û
>C161005100
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
2008415
2008341
-
Glu
CTC
[Ensembl]
¡û
>W1610032634
AZAX01000004
Thermotogota
Marinitoga sp. 1155 [AZAX]
98948
98874
-
Glu
CTC
[ENA]
¡û
>W1610032674
AZAY01000005
Thermotogota
Marinitoga sp. 1197 [AZAY]
65921
65847
-
Glu
CTC
[ENA]
¡û
>W121010845
AGJO01000005
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
22007
22081
+
Glu
CTC
[ENA]
¡û
>W1610520972
JGCK01000073
Thermotogota
Kosmotoga sp. DU53 [JGCK]
150504
150430
-
Glu
CTC
[ENA]
¡û
>W1610612527
LGEV01000014
Thermotogota
Thermotoga sp. 50_64 [LGEV]
43727
43653
-
Glu
CTC
[ENA]
¡û
>W1610612950
LGFH01000010
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
43727
43653
-
Glu
CTC
[ENA]
¡û
>W1710029379
AZAX01000004
Thermotogota
Marinitoga sp. 1155 [AZAX]
98948
98874
-
Glu
CTC
[ENA]
¡û
>W1710029419
AZAY01000005
Thermotogota
Marinitoga sp. 1197 [AZAY]
65921
65847
-
Glu
CTC
[ENA]
¡û
>W1710511668
FMYV01000004
Thermotogota
Geotoga petraea [FMYV]
57788
57862
+
Glu
CTC
[ENA]
¡û
>W1710582870
FQUI01000005
Thermotogota
Marinitoga hydrogenitolerans DSM 16785 [FQUI]
52227
52153
-
Glu
CTC
[ENA]
¡û
>W1710586881
FQXN01000005
Thermotogota
Thermosipho atlanticus DSM 15807 [FQXN]
31279
31353
+
Glu
CTC
[ENA]
¡û
>W1710593335
FRDJ01000002
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
126327
126253
-
Glu
CTC
[ENA]
¡û
>W1710660954
JYCX01000004
Thermotogota
Thermosipho melanesiensis [JYCX]
319024
319098
+
Glu
CTC
[ENA]
¡û
>W1710661096
JYDA01000012
Thermotogota
Thermosipho melanesiensis [JYDA]
68508
68582
+
Glu
CTC
[ENA]
¡û
>W1710701297
LBEY01000029
Thermotogota
Thermosipho sp. 1223 [LBEY]
60553
60479
-
Glu
CTC
[ENA]
¡û
>W1710734232
LGFH01000010
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
43727
43653
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK