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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.405530 (74 seq.)
>W1710901174
LNKT01000001
Campylobacterota
Sulfurovum riftiae [LNKT]
220395
220469
+
Asn
GTT
[ENA]
¡û
>WENV180286040
OBID01938434
[OBID] metagenome; sludge
161
87
-
Asn
GTT
[ENA]
¢þ
>WENV180287206
OBIK01001759
[OBIK] hydrothermal vent metagenome; sea water
268
342
+
Asn
GTT
[ENA]
¢þ
>WENV180288172
OBIL01070551
[OBIL] metagenome; hydrothermal vent
86
160
+
Asn
GTT
[ENA]
¢þ
>WENV180316785
OBKJ01000002
[OBKJ] metagenome; hydrothermal vent
11552
11626
+
Asn
GTT
[ENA]
¢þ
>WENV180332787
OBLD01140718
[OBLD] metagenome; water
87
161
+
Asn
GTT
[ENA]
¢þ
>WENV180581579
OCMK01009147
[OCMK] metagenome; diffuse fluid
288
214
-
Asn
GTT
[ENA]
¢þ
>WENV180583550
OCNB01114621
[OCNB] metagenome; diffuse fluid
120
194
+
Asn
GTT
[ENA]
¢þ
>WENV180634803
OCRB01113531
[OCRB] metagenome; diffuse fluid
89
163
+
Asn
GTT
[ENA]
¢þ
>WENV180648343
OCSI01177435
[OCSI] metagenome; diffuse fluid
85
159
+
Asn
GTT
[ENA]
¢þ
>WENV181206176
OFAT01000085
[OFAT] metagenome; hydrothermal vent
11552
11626
+
Asn
GTT
[ENA]
¢þ
>WENV181206506
OFAW01000002
[OFAW] metagenome; hydrothermal vent
11552
11626
+
Asn
GTT
[ENA]
¢þ
>WENV181206987
OFAY01000001
[OFAY] metagenome; hydrothermal vent
96311
96237
-
Asn
GTT
[ENA]
¢þ
>WENV181207375
OFAZ01000019
[OFAZ] metagenome; hydrothermal vent
32817
32743
-
Asn
GTT
[ENA]
¢þ
>WENV181207783
OFBA01000122
[OFBA] metagenome; hydrothermal vent
11552
11626
+
Asn
GTT
[ENA]
¢þ
>WENV181208159
OFBB01000125
[OFBB] metagenome; hydrothermal vent
339
265
-
Asn
GTT
[ENA]
¢þ
>WENV181208521
OFBC01000001
[OFBC] metagenome; hydrothermal vent
11552
11626
+
Asn
GTT
[ENA]
¢þ
>WENV181223752
OFDD01000108
[OFDD] metagenome; hydrothermal vent
11552
11626
+
Asn
GTT
[ENA]
¢þ
>WENV181224143
OFDE01000085
[OFDE] metagenome; hydrothermal vent
339
265
-
Asn
GTT
[ENA]
¢þ
>WENV181224375
OFDF01000079
[OFDF] metagenome; hydrothermal vent
339
265
-
Asn
GTT
[ENA]
¢þ
>WENV181224552
OFDG01000001
[OFDG] metagenome; hydrothermal vent
96311
96237
-
Asn
GTT
[ENA]
¢þ
>WENV181225261
OFDI01000001
[OFDI] metagenome; hydrothermal vent
46325
46251
-
Asn
GTT
[ENA]
¢þ
>C08010675
AP009179
Campylobacterota
Sulfurovum sp. NBC37-1 [AP009179]
1662141
1662070
-
Asn
GTT
[Ensembl]
¡û
>WENV170001046
AGBJ01001450
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
1811
1885
+
Asn
GTT
[ENA]
¢þ
>WENV170001047
AGBJ01001524
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
107
33
-
Asn
GTT
[ENA]
¢þ
>WENV170012648
ASRM01018229
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
280
206
-
Asn
GTT
[ENA]
¢þ
>WENV170012674
ASRN01000244
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
8701
8627
-
Asn
GTT
[ENA]
¢þ
>WENV170575541
FPHD01000002
[FPHD] hydrothermal vent metagenome genome assembly, contig: NODE_13.; water
3330
3256
-
Asn
GTT
[ENA]
¢þ
>WENV170575660
FPHI01000004
[FPHI] hydrothermal vent metagenome genome assembly, contig: NODE_44.; water
117497
117571
+
Asn
GTT
[ENA]
¢þ
>WENV170575661
FPHI01000004
[FPHI] hydrothermal vent metagenome genome assembly, contig: NODE_44.; water
117649
117723
+
Asn
GTT
[ENA]
¢þ
>WENV170575750
FPHL01000056
[FPHL] hydrothermal vent metagenome genome assembly, contig: NODE_42.; water
144
218
+
Asn
GTT
[ENA]
¢þ
>WENV170575751
FPHL01000056
[FPHL] hydrothermal vent metagenome genome assembly, contig: NODE_42.; water
250
324
+
Asn
GTT
[ENA]
¢þ
>WENV170576096
FPIB01000005
[FPIB] hydrothermal vent metagenome genome assembly, contig: NODE_30.; water
38268
38342
+
Asn
GTT
[ENA]
¢þ
>WENV170657896
JTFP01031467
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
511
437
-
Asn
GTT
[ENA]
¢þ
>WENV170657897
JTFP01031467
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
403
329
-
Asn
GTT
[ENA]
¢þ
>WENV170657898
JTFP01031467
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
291
217
-
Asn
GTT
[ENA]
¢þ
>WENV170674612
LBBO01002597
[LBBO] hydrothermal vent metagenome; microbial mat from marine hydrothermal vent chimney in a deep-sea hydrothermal vent field
85
159
+
Asn
GTT
[ENA]
¢þ
>C191084452
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2146561
2146487
-
Asn
GTT
-
¡û
>C191084453
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2146453
2146379
-
Asn
GTT
-
¡û
>C191084454
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2146341
2146267
-
Asn
GTT
-
¡û
>C191084611
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2055002
2054928
-
Asn
GTT
-
¡û
>C191084612
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2054895
2054821
-
Asn
GTT
-
¡û
>C191084613
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2054789
2054715
-
Asn
GTT
-
¡û
>W1910810872
MUXE01000017
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
35690
35764
+
Asn
GTT
[ENA]
¡û
>W1910810873
MUXE01000017
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
35797
35871
+
Asn
GTT
[ENA]
¡û
>W1910810874
MUXE01000017
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
35915
35989
+
Asn
GTT
[ENA]
¡û
>W1911200250
NREO01000028
Campylobacterota
Arcobacter suis CECT7833 [NREO]
8700
8774
+
Asn
GTT
[ENA]
¡û
>W1911200251
NREO01000028
Campylobacterota
Arcobacter suis CECT7833 [NREO]
8807
8881
+
Asn
GTT
[ENA]
¡û
>W1911200252
NREO01000028
Campylobacterota
Arcobacter suis CECT7833 [NREO]
8913
8987
+
Asn
GTT
[ENA]
¡û
>W1911200303
NREP01000016
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
76353
76427
+
Asn
GTT
[ENA]
¡û
>W1911200304
NREP01000016
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
76460
76534
+
Asn
GTT
[ENA]
¡û
>W1911200305
NREP01000016
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
76567
76641
+
Asn
GTT
[ENA]
¡û
>W1911426339
NXIG01000010
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
1850
1776
-
Asn
GTT
[ENA]
¡û
>W1911426340
NXIG01000010
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
1742
1668
-
Asn
GTT
[ENA]
¡û
>W1911426341
NXIG01000010
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
1630
1556
-
Asn
GTT
[ENA]
¡û
>W1911426382
NXIH01000013
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
97882
97956
+
Asn
GTT
[ENA]
¡û
>W1911426383
NXIH01000013
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
97990
98064
+
Asn
GTT
[ENA]
¡û
>W1911426384
NXIH01000013
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
98104
98178
+
Asn
GTT
[ENA]
¡û
>W1911426385
NXIH01000013
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
98218
98292
+
Asn
GTT
[ENA]
¡û
>W1911426438
NXII01000023
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
948
874
-
Asn
GTT
[ENA]
¡û
>W1911426439
NXII01000023
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
839
765
-
Asn
GTT
[ENA]
¡û
>W1911426440
NXII01000023
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
728
654
-
Asn
GTT
[ENA]
¡û
>W1911426493
NXIJ01000034
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
791
717
-
Asn
GTT
[ENA]
¡û
>W1911426494
NXIJ01000034
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
683
609
-
Asn
GTT
[ENA]
¡û
>W1911426495
NXIJ01000034
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
570
496
-
Asn
GTT
[ENA]
¡û
>W1911576426
PDJZ01000019
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
22738
22812
+
Asn
GTT
[ENA]
¡û
>W1911576427
PDJZ01000019
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
22847
22921
+
Asn
GTT
[ENA]
¡û
>W1911576428
PDJZ01000019
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
22955
23029
+
Asn
GTT
[ENA]
¡û
>C151079545
CP011308
Campylobacterota
Sulfurovum lithotrophicum ATCC BAA-797 [CP011308]
778694
778768
+
Asn
GTT
[Ensembl]
¡û
>C11101072
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2342459
2342385
-
Asn
GTT
[Ensembl]
¡û
>C11101073
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2342351
2342277
-
Asn
GTT
[Ensembl]
¡û
>C11101074
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2342237
2342163
-
Asn
GTT
[Ensembl]
¡û
>W121063620
AJLE01000006
Campylobacterota
Sulfurovum sp. AR [AJLE]
8819
8745
-
Asn
GTT
[ENA]
¡û
>W1610760545
LNKT01000001
Campylobacterota
Sulfurovum riftiae [LNKT]
220395
220469
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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