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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4078 (45 seq.)
>W1711335845
MBRE01000051
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
71507
71602
+
Ser
GCT
[ENA]
¡û
>C025511
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
643469
643560
+
Ser
GCT
[Ensembl]
¡û
>WENV180012896
FMSI01028462
[FMSI] soil metagenome; Soil
16306
16397
+
Ser
GCT
[ENA]
¡û
>W141038164
ALVI01000050
Cyanobacteriota
Kamptonema formosum PCC 6407 [ALVI]
225570
225479
-
Ser
GCT
[ENA]
¡û
>WENV181412263
OGCI01109611
[OGCI] hot springs metagenome; Hot spring water
484
393
-
Ser
GCT
[ENA]
¡û
>WENV181415074
OGCL01003610
[OGCL] hot springs metagenome; Hot spring water
6630
6539
-
Ser
GCT
[ENA]
¡û
>WENV170000798
AFSR01005034
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
657
748
+
Ser
GCT
[ENA]
¡û
>C181030475
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
2234101
2234192
+
Ser
GCT
-
¡û
>C191001227
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
619977
619886
-
Ser
GCT
-
¡û
>C191085239
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
412324
412233
-
Ser
GCT
-
¡û
>C141007956
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
318568
318477
-
Ser
GCT
-
¡û
>C201088940
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
2051843
2051934
+
Ser
GCT
-
¡û
>C211280894
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
431400
431491
+
Ser
GCT
-
¡û
>C231248756
CP088016
Cyanobacteriota
Gloeomargaritales cyanobacterium VI4D9 [CP088016]
2241120
2241026
-
Ser
GCT
-
¡û
>C231396188
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
134430
134339
-
Ser
GCT
-
¡û
>C231653682
OV696605
Cyanobacteriota
Gloeomargaritales cyanobacterium VI4D9 [OV696605]
2241120
2241026
-
Ser
GCT
-
¡û
>C241188880
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
2077767
2077858
+
Ser
GCT
-
¡û
>C241190858
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
2055471
2055562
+
Ser
GCT
-
¡û
>C241192274
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
2060688
2060779
+
Ser
GCT
-
¡û
>W10128298
CACA01000333
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
3141
3232
+
Ser
GCT
[ENA]
¡û
>C241293643
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
432804
432895
+
Ser
GCT
-
¡û
>C241293695
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
2078862
2078953
+
Ser
GCT
-
¡û
>C241293719
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
423102
423193
+
Ser
GCT
-
¡û
>C241316031
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
425772
425863
+
Ser
GCT
-
¡û
>C241316069
CP134167
Cyanobacteriota
Thermosynechococcus sp. PP551 [CP134167]
433831
433922
+
Ser
GCT
-
¡û
>C241316107
CP134168
Cyanobacteriota
Thermosynechococcus sp. PP555 [CP134168]
433831
433922
+
Ser
GCT
-
¡û
>C241316145
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
434930
435021
+
Ser
GCT
-
¡û
>C241316183
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
434859
434950
+
Ser
GCT
-
¡û
>C241316221
CP134171
Cyanobacteriota
Thermosynechococcus sp. PKX95 [CP134171]
434859
434950
+
Ser
GCT
-
¡û
>C241316259
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
434858
434949
+
Ser
GCT
-
¡û
>C241316297
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
434858
434949
+
Ser
GCT
-
¡û
>C241316335
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
434858
434949
+
Ser
GCT
-
¡û
>C241316373
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
430039
430130
+
Ser
GCT
-
¡û
>C241316411
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
430038
430129
+
Ser
GCT
-
¡û
>C241316449
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
430040
430131
+
Ser
GCT
-
¡û
>C241316487
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
433198
433289
+
Ser
GCT
-
¡û
>C241316525
CP134179
Cyanobacteriota
Thermosynechococcus sp. TG218 [CP134179]
433198
433289
+
Ser
GCT
-
¡û
>C241316563
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
423102
423193
+
Ser
GCT
-
¡û
>C241316601
CP134181
Cyanobacteriota
Thermosynechococcus sp. QS41 [CP134181]
436304
436395
+
Ser
GCT
-
¡û
>C241316653
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
2078862
2078953
+
Ser
GCT
-
¡û
>C241316691
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
2078671
2078762
+
Ser
GCT
-
¡û
>C241316793
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
2066793
2066884
+
Ser
GCT
-
¡û
>WENV11101141
AFSR01005034
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
657
748
+
Ser
GCT
[ENA]
¡û
>W11185268
CACA01000333
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
3141
3232
+
Ser
GCT
[ENA]
¡û
>W1611066552
MBRE01000051
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
71507
71602
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK