This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4094 (124 seq.)
>W1711513296
MLFP01000010
Gammaproteobacteria
Pantoea rodasii [MLFP]
70701
70795
+
SeC(p)
TCA
[ENA]
¡û
>W1711513376
MLFR01000003
Gammaproteobacteria
Pantoea rwandensis [MLFR]
95544
95450
-
SeC(p)
TCA
[ENA]
¡û
>W1711513432
MLFS01000004
Gammaproteobacteria
Pantoea wallisii [MLFS]
44345
44439
+
SeC(p)
TCA
[ENA]
¡û
>W1712096112
NHZE01000009
Gammaproteobacteria
Pantoea sp. VS1 [NHZE]
95682
95588
-
SeC(p)
TCA
[ENA]
¡û
>WENV180310393
OBJT01000398
[OBJT] soil metagenome; soil
10418
10512
+
SeC
TCA
[ENA]
¡û
>W141074774
ASZC01000006
Gammaproteobacteria
Pantoea sp. AS-PWVM4 [ASZC]
99529
99435
-
SeC(p)
TCA
[ENA]
¡û
>W141111641
AVSS01000005
Gammaproteobacteria
Pantoea dispersa EGD-AAK13 [AVSS]
64592
64686
+
SeC(p)
TCA
[ENA]
¡û
>WENV170000469
AEWW01039273
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
391
485
+
SeC(p)
TCA
[ENA]
¡û
>WENV170001977
AGFT01055758
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
253
347
+
SeC(p)
TCA
[ENA]
¡û
>WENV170700160
LIDZ01004299
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
27588
27682
+
SeC(p)
TCA
[ENA]
¡û
>C181132890
CP026377
Gammaproteobacteria
Mixta gaviniae DSM 22758 [CP026377]
139305
139211
-
SeC
TCA
-
¡û
>C191155845
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
1294185
1294091
-
Sec
TCA
-
¡û
>C191175058
CP040095
Gammaproteobacteria
Pantoea sp. SO10 [CP040095]
45111
45017
-
Sec
TCA
-
¡û
>W1910760305
MNCH01000005
Gammaproteobacteria
Erwinia sp. OLSSP12 [MNCH]
7140
7234
+
Sec
TCA
[ENA]
¡û
>W1910760814
MNKW01000018
Gammaproteobacteria
Erwinia sp. OLCASP19 [MNKW]
7079
7173
+
Sec
TCA
[ENA]
¡û
>W1910760887
MNKX01000017
Gammaproteobacteria
Erwinia sp. OLMTSP26 [MNKX]
7079
7173
+
Sec
TCA
[ENA]
¡û
>W1910760952
MNKY01000016
Gammaproteobacteria
Erwinia sp. OLMDSP33 [MNKY]
7079
7173
+
Sec
TCA
[ENA]
¡û
>W1910768748
MOMA01000025
Gammaproteobacteria
Erwinia sp. OLTSP20 [MOMA]
4828
4922
+
Sec
TCA
[ENA]
¡û
>W1910768808
MOMB01000049
Gammaproteobacteria
Erwinia sp. OLFS4 [MOMB]
7140
7234
+
Sec
TCA
[ENA]
¡û
>W1911492793
OBEC01000006
Gammaproteobacteria
Pantoea sp. GL120224-02 [OBEC]
90497
90403
-
Sec
TCA
[ENA]
¡û
>W1911496824
OCMY01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000234 [OCMY]
1799181
1799275
+
Sec
TCA
[ENA]
¡û
>W1810071416
PEES01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000233 [PEES]
3538509
3538603
+
Sec
TCA
[ENA]
¡û
>W1810147236
PIQI01000014
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
186090
186184
+
Sec
TCA
[ENA]
¡û
>W1810177778
PJRT01000031
Gammaproteobacteria
Pantoea endophytica 596 [PJRT]
186370
186464
+
Sec
TCA
[ENA]
¡û
>W1810226517
POWM01000009
Gammaproteobacteria
Pantoea sp. ICBG 985 [POWM]
64698
64792
+
Sec
TCA
[ENA]
¡û
>W1810226588
POWN01000010
Gammaproteobacteria
Pantoea sp. ICBG 828 [POWN]
70627
70533
-
Sec
TCA
[ENA]
¡û
>W2010074614
AZSQ01000004
Gammaproteobacteria
Pantoea dispersa 625 [AZSQ]
64916
65010
+
SeC
TCA
[ENA]
¡û
>W2010660322
JACAWY010000001
Gammaproteobacteria
Pantoea sp. BIGb0393 [JACAWY]
2173559
2173465
-
SeC
TCA
[ENA]
¡û
>W2010667738
JACBYY010000007
Gammaproteobacteria
Enterobacter sp. Sphag71 [JACBYY]
183744
183838
+
SeC
TCA
[ENA]
¡û
>W2010718940
JACHZD010000007
Gammaproteobacteria
Enterobacter sp. Sphag1F [JACHZD]
93749
93655
-
SeC
TCA
[ENA]
¡û
>W2010887150
MNCH01000005
Gammaproteobacteria
Erwinia sp. OLSSP12 [MNCH]
7140
7234
+
SeC
TCA
[ENA]
¡û
>W2010887659
MNKW01000018
Gammaproteobacteria
Erwinia sp. OLCASP19 [MNKW]
7079
7173
+
SeC
TCA
[ENA]
¡û
>W2010887732
MNKX01000017
Gammaproteobacteria
Erwinia sp. OLMTSP26 [MNKX]
7079
7173
+
SeC
TCA
[ENA]
¡û
>W2010887797
MNKY01000016
Gammaproteobacteria
Erwinia sp. OLMDSP33 [MNKY]
7079
7173
+
SeC
TCA
[ENA]
¡û
>W2010891017
MOMA01000025
Gammaproteobacteria
Erwinia sp. OLTSP20 [MOMA]
4828
4922
+
SeC
TCA
[ENA]
¡û
>W2010891077
MOMB01000049
Gammaproteobacteria
Erwinia sp. OLFS4 [MOMB]
7140
7234
+
SeC
TCA
[ENA]
¡û
>W2010911827
MTCI01000015
Gammaproteobacteria
Erwinia sp. OAMSP11 [MTCI]
6276
6370
+
SeC
TCA
[ENA]
¡û
>W2011153744
OBEC01000006
Gammaproteobacteria
Pantoea sp. GL120224-02 [OBEC]
90497
90403
-
SeC
TCA
[ENA]
¡û
>W2011157728
OCMY01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000234 [OCMY]
1799181
1799275
+
SeC
TCA
[ENA]
¡û
>W2011180777
PCQJ01000005
Gammaproteobacteria
Erwinia billingiae MYb121 [PCQJ]
356401
356307
-
SeC
TCA
[ENA]
¡û
>W2011427347
RHRY01000056
Gammaproteobacteria
Pantoea dispersa PD_192 [RHRY]
2021
1927
-
SeC
TCA
[ENA]
¡û
>W2011498849
RXOO01000002
Gammaproteobacteria
Pantoea dispersa C34 [RXOO]
66280
66374
+
SeC
TCA
[ENA]
¡û
>W2011536904
SCKT01000010
Gammaproteobacteria
Pantoea dispersa DSM 30073 [SCKT]
63306
63400
+
SeC
TCA
[ENA]
¡û
>W2011543138
SDFT01000046
Gammaproteobacteria
Pantoea sp. R102 [SDFT]
50648
50742
+
SeC
TCA
[ENA]
¡û
>W2011620174
SLVN01000012
Gammaproteobacteria
Pantoea sp. BK028 [SLVN]
99844
99750
-
SeC
TCA
[ENA]
¡û
>W2011756741
SZZV01000007
Gammaproteobacteria
Pantoea sp. Seng [SZZV]
94170
94076
-
SeC
TCA
[ENA]
¡û
>W2011756949
SZZZ01000011
Gammaproteobacteria
Pantoea sp. Taur [SZZZ]
9034
8940
-
SeC
TCA
[ENA]
¡û
>W2012037058
VICF01000009
Gammaproteobacteria
Pantoea dispersa bio [VICF]
64769
64863
+
SeC
TCA
[ENA]
¡û
>W2012201357
VWVL01000009
Gammaproteobacteria
Pantoea sp. B_9 [VWVL]
108776
108682
-
SeC
TCA
[ENA]
¡û
>W2012201562
VWVO01000018
Gammaproteobacteria
Pantoea sp. B_10 [VWVO]
4675
4769
+
SeC
TCA
[ENA]
¡û
>W2012203940
VWXB01000012
Gammaproteobacteria
Pantoea sp. Cy-640 [VWXB]
102824
102730
-
SeC
TCA
[ENA]
¡û
>W2012203985
VWXC01000006
Gammaproteobacteria
Pantoea sp. Al-1710 [VWXC]
150484
150578
+
SeC
TCA
[ENA]
¡û
>W2012204078
VWXD01000007
Gammaproteobacteria
Pantoea sp. Acro-805 [VWXD]
108829
108735
-
SeC
TCA
[ENA]
¡û
>W2012204320
VWXG01000012
Gammaproteobacteria
Pantoea sp. Ap-870 [VWXG]
53979
53885
-
SeC
TCA
[ENA]
¡û
>W2012204385
VWXH01000009
Gammaproteobacteria
Pantoea sp. Ap-959 [VWXH]
64689
64783
+
SeC
TCA
[ENA]
¡û
>W2012206073
VXKA01000014
Gammaproteobacteria
Pantoea dispersa CCUG 25232T [VXKA]
103717
103623
-
SeC
TCA
[ENA]
¡û
>W2012356323
WJYG01000007
Gammaproteobacteria
Enterobacteriaceae bacterium RIT702 [WJYG]
184578
184672
+
SeC
TCA
[ENA]
¡û
>W2012356454
WJYI01000006
Gammaproteobacteria
Enterobacteriaceae bacterium RIT697 [WJYI]
119883
119789
-
SeC
TCA
[ENA]
¡û
>W2012356667
WJYL01000011
Gammaproteobacteria
Enterobacteriaceae bacterium RIT692 [WJYL]
183596
183690
+
SeC
TCA
[ENA]
¡û
>W2110095573
CAJCKS010000011
Gammaproteobacteria
Pantoea sp. ME81 [CAJCKS]
6542
6636
+
SeC
TCA
[ENA]
¡û
>W2110268637
JACVBQ010000007
Gammaproteobacteria
Pantoea sp. PNT02 [JACVBQ]
95396
95302
-
SeC
TCA
[ENA]
¡û
>W2110275230
JACVUN010000011
Gammaproteobacteria
Erwinia sp. S59 [JACVUN]
89833
89739
-
SeC
TCA
[ENA]
¡û
>W2110275284
JACVUO010000015
Gammaproteobacteria
Pantoea sp. S61 [JACVUO]
63037
63131
+
SeC
TCA
[ENA]
¡û
>W2110275323
JACVUP010000007
Gammaproteobacteria
Erwinia sp. S63 [JACVUP]
91934
91840
-
SeC
TCA
[ENA]
¡û
>W2110441413
JAERJM010000007
Gammaproteobacteria
Pantoea sp. JGM49 [JAERJM]
173022
173116
+
SeC
TCA
[ENA]
¡û
>W2110513782
JAFLWX010000005
Gammaproteobacteria
Pantoea endophytica HN-23 [JAFLWX]
186128
186222
+
SeC
TCA
[ENA]
¡û
>W2110541145
JAGGMY010000001
Gammaproteobacteria
Pantoea cypripedii WS4375 [JAGGMY]
1378177
1378083
-
SeC
TCA
[ENA]
¡û
>W2110575165
JAGTWN010000004
Gammaproteobacteria
Pantoea sp. EnvH [JAGTWN]
3006769
3006863
+
SeC
TCA
[ENA]
¡û
>W2110685911
JAIMIE010000007
Gammaproteobacteria
Pantoea sp. DY-5 [JAIMIE]
184845
184939
+
SeC
TCA
[ENA]
¡û
>W2110685986
JAIMIF010000006
Gammaproteobacteria
Pantoea sp. DY-15 [JAIMIF]
90578
90484
-
SeC
TCA
[ENA]
¡û
>W2110686052
JAIMIG010000005
Gammaproteobacteria
Pantoea sp. DY-17 [JAIMIG]
186531
186625
+
SeC
TCA
[ENA]
¡û
>W2110696368
JAIUDE010000008
Gammaproteobacteria
Pantoea rwandensis alder70 [JAIUDE]
71262
71356
+
SeC
TCA
[ENA]
¡û
>W2110696472
JAIUDF010000007
Gammaproteobacteria
Pantoea rwandensis alder69 [JAIUDF]
97248
97154
-
SeC
TCA
[ENA]
¡û
>W10106242
ACYJ01000014
Gammaproteobacteria
Pantoea sp. At-9b [ACYJ]
98656
98562
-
SeC
TCA
[ENA]
¡û
>C211395567
CP082341
Gammaproteobacteria
Pantoea dispersa AHKW2b [CP082341]
44666
44572
-
SeC
TCA
-
¡û
>C211395646
CP082346
Gammaproteobacteria
Pantoea dispersa Lsch [CP082346]
54505
54411
-
SeC
TCA
-
¡û
>W2110750770
MQSZ01000008
Gammaproteobacteria
Erwinia billingiae PBb [MQSZ]
41198
41104
-
SeC
TCA
[ENA]
¡û
>C231456366
CP102604
Gammaproteobacteria
Pantoea sp. SOD02 [CP102604]
51175
51081
-
SeC
TCA
-
¡û
>C231501771
CP106660
Gammaproteobacteria
Pantoea dispersa ML.8a3 [CP106660]
46915
46821
-
SeC
TCA
-
¡û
>C231516980
CP107573
Gammaproteobacteria
Pantoea dispersa JL.02bL [CP107573]
58197
58103
-
SeC
TCA
-
¡û
>C231522009
CP109853
Gammaproteobacteria
Pantoea dispersa ESL4 [CP109853]
46860
46766
-
SeC
TCA
-
¡û
>W1510092996
CEFO01000004
Gammaproteobacteria
Enterobacter ludwigii EnVs6 [CEFO]
448694
448600
-
SeC
TCA
[ENA]
¡û
>W1510093118
CEFQ01000003
Gammaproteobacteria
Enterobacter ludwigii EnVs2 [CEFQ]
170683
170777
+
SeC
TCA
[ENA]
¡û
>W1510093194
CEFR01000005
Gammaproteobacteria
Enterobacter ludwigii LecVs2 [CEFR]
176647
176741
+
SeC
TCA
[ENA]
¡û
>C241031351
CP028271
Gammaproteobacteria
Mixta intestinalis SRCM103226 [CP028271]
3903189
3903095
-
SeC
TCA
-
¡û
>C241230443
CP117199
Gammaproteobacteria
Pantoea sp. SS70 [CP117199]
43592
43498
-
SeC
TCA
-
¡û
>WENV11100827
AEWW01039273
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
391
485
+
SeC(p)
TCA
[ENA]
¡û
>WENV11102049
AGFT01055758
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
253
347
+
SeC(p)
TCA
[ENA]
¡û
>W11108565
ACYJ01000014
Gammaproteobacteria
Pantoea sp. At-9b [ACYJ]
98656
98562
-
SeC(p)
TCA
[ENA]
¡û
>C11116752
CP002433
Gammaproteobacteria
Pantoea sp. At-9b [CP002433]
50134
50040
-
SeC
TCA
[Ensembl]
¡û
>W1511356745
JRUP01000038
Gammaproteobacteria
Enterobacter cancerogenus M004 [JRUP]
9991
10085
+
SeC
TCA
[ENA]
¡û
>W1511402145
JTJJ01000015
Gammaproteobacteria
Pantoea rodasii ND03 [JTJJ]
6277
6183
-
SeC
TCA
[ENA]
¡û
>W1511547673
JZRD01000016
Gammaproteobacteria
Pantoea sp. SM3 [JZRD]
127923
128017
+
SeC
TCA
[ENA]
¡û
>W1511699736
LGIS01000025
Gammaproteobacteria
Pantoea sp. RIT-PI-b [LGIS]
36717
36811
+
SeC
TCA
[ENA]
¡û
>C121016310
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
4946658
4946564
-
SeC
TCA
[Ensembl]
¡û
>C161035372
CP011427
Gammaproteobacteria
Pantoea vagans ND02 [CP011427]
4042418
4042512
+
SeC(p)
TCA
[Ensembl]
¡û
>W1610053116
BBOB01000012
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
24350
24444
+
SeC(p)
TCA
[ENA]
¡û
>W1610053221
BBOC01000062
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
25365
25271
-
SeC(p)
TCA
[ENA]
¡û
>W1610053281
BBOD01000024
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
62854
62948
+
SeC(p)
TCA
[ENA]
¡û
>W121084898
AKIU01000090
Gammaproteobacteria
Pantoea sp. GM01 [AKIU]
44272
44366
+
SeC
TCA
[ENA]
¡û
>W1610591089
LDRY01000009
Gammaproteobacteria
Pantoea dispersa [LDRY]
64646
64740
+
SeC(p)
TCA
[ENA]
¡û
>W1610591160
LDRZ01000008
Gammaproteobacteria
Pantoea dispersa [LDRZ]
64563
64657
+
SeC(p)
TCA
[ENA]
¡û
>W1610591260
LDSA01000031
Gammaproteobacteria
Pantoea dispersa [LDSA]
117863
117769
-
SeC(p)
TCA
[ENA]
¡û
>W1610591314
LDSB01000025
Gammaproteobacteria
Pantoea dispersa [LDSB]
118094
118000
-
SeC(p)
TCA
[ENA]
¡û
>W1610591360
LDSC01000008
Gammaproteobacteria
Pantoea dispersa [LDSC]
106661
106567
-
SeC(p)
TCA
[ENA]
¡û
>W1610591395
LDSD01000002
Gammaproteobacteria
Pantoea dispersa [LDSD]
97261
97167
-
SeC(p)
TCA
[ENA]
¡û
>W1610591481
LDSE01000012
Gammaproteobacteria
Pantoea dispersa [LDSE]
7412
7318
-
SeC(p)
TCA
[ENA]
¡û
>W1610591529
LDSF01000004
Gammaproteobacteria
Pantoea dispersa [LDSF]
97373
97279
-
SeC(p)
TCA
[ENA]
¡û
>W1610591622
LDSG01000010
Gammaproteobacteria
Pantoea dispersa [LDSG]
64575
64669
+
SeC(p)
TCA
[ENA]
¡û
>W1710049494
BBOB01000012
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
24350
24444
+
SeC(p)
TCA
[ENA]
¡û
>W1710049599
BBOC01000062
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
25365
25271
-
SeC(p)
TCA
[ENA]
¡û
>W1710049659
BBOD01000024
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
62854
62948
+
SeC(p)
TCA
[ENA]
¡û
>W1710524412
FNIS01000008
Gammaproteobacteria
Shigella sonnei [FNIS]
167218
167312
+
SeC(p)
TCA
[ENA]
¡û
>W1710566695
FOSD01000009
Gammaproteobacteria
Pantoea symbiotica YR512 [FOSD]
183386
183480
+
SeC(p)
TCA
[ENA]
¡û
>W1710578729
FPBU01000009
Gammaproteobacteria
Pantoea sp. YR525 [FPBU]
183386
183480
+
SeC(p)
TCA
[ENA]
¡û
>W1710710369
LDRY01000009
Gammaproteobacteria
Pantoea dispersa [LDRY]
64646
64740
+
SeC(p)
TCA
[ENA]
¡û
>W1710710440
LDRZ01000008
Gammaproteobacteria
Pantoea dispersa [LDRZ]
64563
64657
+
SeC(p)
TCA
[ENA]
¡û
>W1710710540
LDSA01000031
Gammaproteobacteria
Pantoea dispersa [LDSA]
117863
117769
-
SeC(p)
TCA
[ENA]
¡û
>W1710710594
LDSB01000025
Gammaproteobacteria
Pantoea dispersa [LDSB]
118094
118000
-
SeC(p)
TCA
[ENA]
¡û
>W1710710640
LDSC01000008
Gammaproteobacteria
Pantoea dispersa [LDSC]
106661
106567
-
SeC(p)
TCA
[ENA]
¡û
>W1710710675
LDSD01000002
Gammaproteobacteria
Pantoea dispersa [LDSD]
97261
97167
-
SeC(p)
TCA
[ENA]
¡û
>W1710710761
LDSE01000012
Gammaproteobacteria
Pantoea dispersa [LDSE]
7412
7318
-
SeC(p)
TCA
[ENA]
¡û
>W1710710809
LDSF01000004
Gammaproteobacteria
Pantoea dispersa [LDSF]
97373
97279
-
SeC(p)
TCA
[ENA]
¡û
>W1710754822
LHXI01000003
Gammaproteobacteria
Erwinia billingiae [LHXI]
175836
175930
+
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK