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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452491 (20 seq.)
>WENV181408388
OGCH01002356
[OGCH] hot springs metagenome; hot springs
6363
6288
-
Glu
TTC
[ENA]
¢þ
>WENV181408915
OGCH01023179
[OGCH] hot springs metagenome; hot springs
692
767
+
Glu
TTC
[ENA]
¢þ
>C08011024
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
754150
754078
-
Glu
TTC
[Ensembl]
¡û
>WENV170675732
LDZQ01000392
[LDZQ] terrestrial metagenome; oil reservoir sample I2
10668
10743
+
Glu
TTC
[ENA]
¢þ
>WENV170676061
LDZR01000660
[LDZR] terrestrial metagenome; oil reservoir sample K2
10061
9986
-
Glu
TTC
[ENA]
¢þ
>WENV170676461
LDZR01002701
[LDZR] terrestrial metagenome; oil reservoir sample K2
12061
11986
-
Glu
TTC
[ENA]
¢þ
>W141561635
JHYP01000004
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
382720
382795
+
Glu
TTC
[ENA]
¡û
>W141778834
JONI01000004
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
256450
256525
+
Glu
TTC
[ENA]
¡û
>C141000360
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
747315
747240
-
Glu
TTC
-
¡û
>C141000396
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
1893634
1893559
-
Glu
TTC
-
¡û
>C151001663
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
954265
954190
-
Glu
TTC
-
¡û
>C151001707
AP014510
Thermotogota
Thermotoga profunda AZM34c06 [AP014510]
1274925
1274850
-
Glu
TTC
-
¡û
>C11123130
CP002351
Thermotogota
Pseudothermotoga thermarum DSM 5069 [CP002351]
406494
406569
+
Glu
TTC
[Ensembl]
¡û
>C161005095
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
2138600
2138675
+
Glu
TTC
[Ensembl]
¡û
>W1610612534
LGEV01000025
Thermotogota
Thermotoga sp. 50_64 [LGEV]
10668
10743
+
Glu
TTC
[ENA]
¡û
>W1610612881
LGFF01000039
Thermotogota
Pseudothermotoga lettingae [LGFF]
10061
9986
-
Glu
TTC
[ENA]
¡û
>W1610612966
LGFH01000025
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
12061
11986
-
Glu
TTC
[ENA]
¡û
>W1710733932
LGEV01000025
Thermotogota
Thermotoga sp. 50_64 [LGEV]
10668
10743
+
Glu
TTC
[ENA]
¡û
>W1710734163
LGFF01000039
Thermotogota
Pseudothermotoga lettingae [LGFF]
10061
9986
-
Glu
TTC
[ENA]
¡û
>W1710734248
LGFH01000025
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
12061
11986
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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