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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453380 (121 seq.)
>W1710858999
LMBR01000100
Chlorobiota
Chlorobium limicola [LMBR]
4041
3968
-
Thr
GGT
[ENA]
¡û
>W1711136058
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
506452
506377
-
Thr
GGT
[ENA]
¡û
>W1711626077
MPJE01000019
Chlorobiota
Chlorobium sp. KB01 [MPJE]
35457
35384
-
Thr
GGT
[ENA]
¡û
>C171049443
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
263560
263633
+
Thr
GGT
-
¡û
>C171060552
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
82922
82997
+
Thr
GGT
-
¡û
>C005289
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
399460
399532
+
Thr
GGT
[Ensembl]
¡û
>C006575
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
253131
253203
+
Thr
GGT
[Ensembl]
¡û
>C007006
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
152200
152275
+
Thr
GGT
[Ensembl]
¡û
>C018258
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1795457
1795385
-
Thr
GGT
[Ensembl]
¡û
>w018061
AASE01000035
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
11200
11275
+
Thr
GGT
[ENA]
¡û
>w007148
AAIJ01000002
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
1441
1364
-
Thr
GGT
[ENA]
¡û
>w006128
AAHJ01000052
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
187
264
+
Thr
GGT
[ENA]
¡û
>C08003490
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
210715
210788
+
Thr
GGT
[Ensembl]
¡û
>C08003631
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
311817
311890
+
Thr
GGT
[Ensembl]
¡û
>C08003607
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
2083370
2083295
-
Thr
GGT
[Ensembl]
¡û
>C08007150
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
298341
298414
+
Thr
GGT
[Ensembl]
¡û
>WENV183812094
PYLN01000002
[PYLN] freshwater metagenome; meromictic lake
30464
30391
-
Thr
GGT
[ENA]
¢þ
>WENV170598901
FUWD010054310
[FUWD] metagenome; unknown
171
98
-
Thr
GGT
[ENA]
¢þ
>WENV170613994
FUWD012823312
[FUWD] metagenome; unknown
14696
14769
+
Thr
GGT
[ENA]
¢þ
>WENV170624598
FUWD013183728
[FUWD] metagenome; unknown
8246
8319
+
Thr
GGT
[ENA]
¢þ
>WENV170624600
FUWD013183729
[FUWD] metagenome; unknown
2
75
+
Thr
GGT
[ENA]
¢þ
>WENV170632881
FUWD013388245
[FUWD] metagenome; unknown
8246
8319
+
Thr
GGT
[ENA]
¢þ
>WENV170632883
FUWD013388246
[FUWD] metagenome; unknown
2
75
+
Thr
GGT
[ENA]
¢þ
>W09102644
AAIB01000004
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
40634
40561
-
Thr
GGT
[ENA]
¡û
>W09103349
AAJD01000003
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
204506
204579
+
Thr
GGT
[ENA]
¡û
>W1810062179
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
2640766
2640693
-
Thr
GGT
[ENA]
¡û
>SRA1019877
SRR035083.10803
454 Sequencing (SRP001804)
140
67
-
Thr
GGT
[SRA]
>SRA1019904
SRR035083.18618
454 Sequencing (SRP001804)
117
44
-
Thr
GGT
[SRA]
>SRA1019914
SRR035083.20556
454 Sequencing (SRP001804)
24
97
+
Thr
GGT
[SRA]
>SRA1019942
SRR035083.26255
454 Sequencing (SRP001804)
24
97
+
Thr
GGT
[SRA]
>SRA1020002
SRR035083.39351
454 Sequencing (SRP001804)
23
96
+
Thr
GGT
[SRA]
>SRA1020043
SRR035083.46700
454 Sequencing (SRP001804)
42
115
+
Thr
GGT
[SRA]
>SRA1020091
SRR035083.56609
454 Sequencing (SRP001804)
221
294
+
Thr
GGT
[SRA]
>SRA1020185
SRR035083.69195
454 Sequencing (SRP001804)
47
120
+
Thr
GGT
[SRA]
>SRA1020268
SRR035083.86654
454 Sequencing (SRP001804)
56
129
+
Thr
GGT
[SRA]
>SRA1020359
SRR035083.101598
454 Sequencing (SRP001804)
142
69
-
Thr
GGT
[SRA]
>SRA1020401
SRR035083.109098
454 Sequencing (SRP001804)
418
345
-
Thr
GGT
[SRA]
>SRA1020410
SRR035083.110863
454 Sequencing (SRP001804)
140
67
-
Thr
GGT
[SRA]
>SRA1020471
SRR035083.119812
454 Sequencing (SRP001804)
357
282
-
Thr
GGT
[SRA]
>SRA1020492
SRR035083.122621
454 Sequencing (SRP001804)
466
539
+
Thr
GGT
[SRA]
>SRA1020735
SRR035083.157200
454 Sequencing (SRP001804)
453
526
+
Thr
GGT
[SRA]
>SRA1020770
SRR035083.162038
454 Sequencing (SRP001804)
138
211
+
Thr
GGT
[SRA]
>SRA1021042
SRR035083.202516
454 Sequencing (SRP001804)
81
8
-
Thr
GGT
[SRA]
>SRA1021398
SRR035083.254628
454 Sequencing (SRP001804)
14
87
+
Thr
GGT
[SRA]
>SRA1021577
SRR035083.275398
454 Sequencing (SRP001804)
121
194
+
Thr
GGT
[SRA]
>SRA1021652
SRR035083.287571
454 Sequencing (SRP001804)
23
96
+
Thr
GGT
[SRA]
>SRA1022213
SRR035083.368908
454 Sequencing (SRP001804)
23
96
+
Thr
GGT
[SRA]
>SRA1022484
SRR035083.412217
454 Sequencing (SRP001804)
152
225
+
Thr
GGT
[SRA]
>SRA1022663
SRR035083.439134
454 Sequencing (SRP001804)
478
405
-
Thr
GGT
[SRA]
>SRA1023065
SRR035083.514021
454 Sequencing (SRP001804)
38
111
+
Thr
GGT
[SRA]
>SRA1023079
SRR035083.516646
454 Sequencing (SRP001804)
38
111
+
Thr
GGT
[SRA]
>SRA1023095
SRR035083.519559
454 Sequencing (SRP001804)
14
87
+
Thr
GGT
[SRA]
>SRA1026321
SRR035085.185260
454 Sequencing (SRP001806)
238
165
-
Thr
GGT
[SRA]
>SRA1028807
SRR035087.12237
454 Sequencing (SRP001808)
248
321
+
Thr
GGT
[SRA]
>SRA1029075
SRR035087.69287
454 Sequencing (SRP001808)
238
311
+
Thr
GGT
[SRA]
>SRA1029252
SRR035087.98062
454 Sequencing (SRP001808)
188
261
+
Thr
GGT
[SRA]
>SRA1032562
SRR035088.47530
454 Sequencing (SRP001809)
128
55
-
Thr
GGT
[SRA]
>SRA1032626
SRR035088.66700
454 Sequencing (SRP001809)
162
235
+
Thr
GGT
[SRA]
>SRA1032721
SRR035088.86779
454 Sequencing (SRP001809)
100
27
-
Thr
GGT
[SRA]
>SRA1032863
SRR035088.118389
454 Sequencing (SRP001809)
108
181
+
Thr
GGT
[SRA]
>SRA1033010
SRR035088.151199
454 Sequencing (SRP001809)
155
82
-
Thr
GGT
[SRA]
>SRA1036340
SRR035089.498190
454 Sequencing (SRP001810)
296
369
+
Thr
GGT
[SRA]
>SRA1036591
SRR035089.556216
454 Sequencing (SRP001810)
391
318
-
Thr
GGT
[SRA]
>SRA1036818
SRR035090.13946
454 Sequencing (SRP001811)
445
372
-
Thr
GGT
[SRA]
>SRA1036877
SRR035090.30685
454 Sequencing (SRP001811)
120
193
+
Thr
GGT
[SRA]
>SRA1036888
SRR035090.31835
454 Sequencing (SRP001811)
292
217
-
Thr
GGT
[SRA]
>SRA1036930
SRR035090.40403
454 Sequencing (SRP001811)
378
451
+
Thr
GGT
[SRA]
>SRA1037067
SRR035090.69197
454 Sequencing (SRP001811)
119
192
+
Thr
GGT
[SRA]
>SRA1037201
SRR035090.92308
454 Sequencing (SRP001811)
116
189
+
Thr
GGT
[SRA]
>SRA1037333
SRR035090.117969
454 Sequencing (SRP001811)
143
216
+
Thr
GGT
[SRA]
>SRA1037528
SRR035090.147682
454 Sequencing (SRP001811)
420
347
-
Thr
GGT
[SRA]
>SRA1037617
SRR035090.163946
454 Sequencing (SRP001811)
54
127
+
Thr
GGT
[SRA]
>SRA1037698
SRR035090.175882
454 Sequencing (SRP001811)
400
327
-
Thr
GGT
[SRA]
>SRA1038016
SRR035090.234080
454 Sequencing (SRP001811)
11
84
+
Thr
GGT
[SRA]
>SRA1038035
SRR035090.236153
454 Sequencing (SRP001811)
147
74
-
Thr
GGT
[SRA]
>SRA1038150
SRR035090.254382
454 Sequencing (SRP001811)
132
205
+
Thr
GGT
[SRA]
>SRA1038154
SRR035090.255300
454 Sequencing (SRP001811)
17
90
+
Thr
GGT
[SRA]
>SRA1038176
SRR035090.258800
454 Sequencing (SRP001811)
400
327
-
Thr
GGT
[SRA]
>SRA1038436
SRR035090.305016
454 Sequencing (SRP001811)
301
228
-
Thr
GGT
[SRA]
>SRA1038444
SRR035090.305700
454 Sequencing (SRP001811)
132
205
+
Thr
GGT
[SRA]
>SRA1038554
SRR035090.326362
454 Sequencing (SRP001811)
280
207
-
Thr
GGT
[SRA]
>SRA1038702
SRR035090.352109
454 Sequencing (SRP001811)
400
327
-
Thr
GGT
[SRA]
>SRA1038869
SRR035090.384988
454 Sequencing (SRP001811)
42
115
+
Thr
GGT
[SRA]
>SRA1038906
SRR035090.391889
454 Sequencing (SRP001811)
90
163
+
Thr
GGT
[SRA]
>SRA1039073
SRR035090.419604
454 Sequencing (SRP001811)
132
205
+
Thr
GGT
[SRA]
>SRA1039095
SRR035090.423555
454 Sequencing (SRP001811)
8
81
+
Thr
GGT
[SRA]
>SRA1039273
SRR035090.455608
454 Sequencing (SRP001811)
95
168
+
Thr
GGT
[SRA]
>SRA1039381
SRR035090.480843
454 Sequencing (SRP001811)
427
354
-
Thr
GGT
[SRA]
>SRA1039534
SRR035090.509368
454 Sequencing (SRP001811)
103
30
-
Thr
GGT
[SRA]
>SRA1039557
SRR035090.516045
454 Sequencing (SRP001811)
34
107
+
Thr
GGT
[SRA]
>SRA1039592
SRR035090.522699
454 Sequencing (SRP001811)
12
85
+
Thr
GGT
[SRA]
>SRA1039681
SRR035090.543338
454 Sequencing (SRP001811)
35
108
+
Thr
GGT
[SRA]
>SRA1039684
SRR035090.544349
454 Sequencing (SRP001811)
34
107
+
Thr
GGT
[SRA]
>SRA1039814
SRR035090.576203
454 Sequencing (SRP001811)
34
107
+
Thr
GGT
[SRA]
>SRA1039820
SRR035090.577972
454 Sequencing (SRP001811)
346
273
-
Thr
GGT
[SRA]
>SRA1039921
SRR035090.602769
454 Sequencing (SRP001811)
46
119
+
Thr
GGT
[SRA]
>SRA1042508
SRR035091.400276
454 Sequencing (SRP001812)
54
127
+
Thr
GGT
[SRA]
>SRA1046202
SRR035093.253138
454 Sequencing (SRP001814)
243
316
+
Thr
GGT
[SRA]
>SRA1047311
SRR035093.507441
454 Sequencing (SRP001814)
367
294
-
Thr
GGT
[SRA]
>SRA1051991
SRR035098.120491
454 Sequencing (SRP001819)
391
318
-
Thr
GGT
[SRA]
>SRA1053923
SRR035099.1654
454 Sequencing (SRP001820)
104
177
+
Thr
GGT
[SRA]
>SRA1053957
SRR035099.16422
454 Sequencing (SRP001820)
280
205
-
Thr
GGT
[SRA]
>SRA1054176
SRR035099.76427
454 Sequencing (SRP001820)
267
194
-
Thr
GGT
[SRA]
>SRA1054359
SRR035099.115116
454 Sequencing (SRP001820)
263
336
+
Thr
GGT
[SRA]
>SRA1054376
SRR035099.118584
454 Sequencing (SRP001820)
164
91
-
Thr
GGT
[SRA]
>SRA1054529
SRR035099.156388
454 Sequencing (SRP001820)
71
144
+
Thr
GGT
[SRA]
>SRA1054531
SRR035099.156465
454 Sequencing (SRP001820)
84
159
+
Thr
GGT
[SRA]
>SRA1054548
SRR035099.159830
454 Sequencing (SRP001820)
414
341
-
Thr
GGT
[SRA]
>SRA1054564
SRR035099.164290
454 Sequencing (SRP001820)
322
395
+
Thr
GGT
[SRA]
>SRA1054592
SRR035099.169747
454 Sequencing (SRP001820)
257
184
-
Thr
GGT
[SRA]
>SRA1054610
SRR035099.172210
454 Sequencing (SRP001820)
124
51
-
Thr
GGT
[SRA]
>SRA1054650
SRR035099.181707
454 Sequencing (SRP001820)
294
367
+
Thr
GGT
[SRA]
>SRA1054652
SRR035099.181905
454 Sequencing (SRP001820)
214
141
-
Thr
GGT
[SRA]
>SRA1054659
SRR035099.182850
454 Sequencing (SRP001820)
317
244
-
Thr
GGT
[SRA]
>SRA1054685
SRR035099.188520
454 Sequencing (SRP001820)
263
336
+
Thr
GGT
[SRA]
>SRA1054700
SRR035099.190338
454 Sequencing (SRP001820)
130
57
-
Thr
GGT
[SRA]
>SRA1054747
SRR035099.205446
454 Sequencing (SRP001820)
427
354
-
Thr
GGT
[SRA]
>SRA1054760
SRR035099.207667
454 Sequencing (SRP001820)
393
466
+
Thr
GGT
[SRA]
>SRA1054845
SRR035099.228704
454 Sequencing (SRP001820)
189
116
-
Thr
GGT
[SRA]
>W1610721345
LMBR01000100
Chlorobiota
Chlorobium limicola [LMBR]
4041
3968
-
Thr
GGT
[ENA]
¡û
>W1610947178
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
506452
506377
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK