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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453695 (146 seq.)
>W1711136051
LUZT01000004
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
53467
53394
-
Gly
CCC
[ENA]
¡û
>W1711167317
LVWG01000029
Chlorobiota
Pelodictyon luteolum [LVWG]
17013
17088
+
Gly
CCC
[ENA]
¡û
>W1711626104
MPJE01000108
Chlorobiota
Chlorobium sp. KB01 [MPJE]
2228
2155
-
Gly
CCC
[ENA]
¡û
>C171060592
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
949515
949442
-
Gly
CCC
-
¡û
>C005296
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
1264812
1264887
+
Gly
CCC
[Ensembl]
¡û
>C006593
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
1872482
1872557
+
Gly
CCC
[Ensembl]
¡û
>C007025
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
1240961
1241033
+
Gly
CCC
[Ensembl]
¡û
>C016746
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
1491943
1492018
+
Gly
CCC
[Ensembl]
¡û
>C018245
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1182496
1182571
+
Gly
CCC
[Ensembl]
¡û
>w018046
AASE01000015
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
13639
13716
+
Gly
CCC
[ENA]
¡û
>w007188
AAIK01000007
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
12092
12169
+
Gly
CCC
[ENA]
¡û
>C08003598
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
1451384
1451457
+
Gly
CCC
[Ensembl]
¡û
>C08007698
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
1704740
1704815
+
Gly
CCC
[Ensembl]
¡û
>WENV183812128
PYLN01000181
[PYLN] freshwater metagenome; meromictic lake
248
324
+
Gly
CCC
[ENA]
¢þ
>WENV170613666
FUWD012816068
[FUWD] metagenome; unknown
40708
40633
-
Gly
CCC
[ENA]
¢þ
>WENV170614043
FUWD012824120
[FUWD] metagenome; unknown
4668
4592
-
Gly
CCC
[ENA]
¢þ
>WENV170620069
FUWD013025222
[FUWD] metagenome; unknown
7400
7473
+
Gly
CCC
[ENA]
¢þ
>WENV170628196
FUWD013243146
[FUWD] metagenome; unknown
7400
7473
+
Gly
CCC
[ENA]
¢þ
>W09102656
AAIB01000010
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
38019
38095
+
Gly
CCC
[ENA]
¡û
>W09103336
AAJD01000001
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
179569
179645
+
Gly
CCC
[ENA]
¡û
>SRA1019571
SRR035082.477647
454 Sequencing (SRP001803)
175
251
+
Gly
CCC
[SRA]
>SRA1019896
SRR035083.17363
454 Sequencing (SRP001804)
410
334
-
Gly
CCC
[SRA]
>SRA1020018
SRR035083.42247
454 Sequencing (SRP001804)
224
300
+
Gly
CCC
[SRA]
>SRA1020104
SRR035083.57681
454 Sequencing (SRP001804)
456
380
-
Gly
CCC
[SRA]
>SRA1020136
SRR035083.61491
454 Sequencing (SRP001804)
433
509
+
Gly
CCC
[SRA]
>SRA1020150
SRR035083.63761
454 Sequencing (SRP001804)
418
342
-
Gly
CCC
[SRA]
>SRA1020370
SRR035083.103279
454 Sequencing (SRP001804)
227
303
+
Gly
CCC
[SRA]
>SRA1020379
SRR035083.104523
454 Sequencing (SRP001804)
32
108
+
Gly
CCC
[SRA]
>SRA1020381
SRR035083.104528
454 Sequencing (SRP001804)
77
1
-
Gly
CCC
[SRA]
>SRA1020431
SRR035083.114389
454 Sequencing (SRP001804)
32
108
+
Gly
CCC
[SRA]
>SRA1020439
SRR035083.115746
454 Sequencing (SRP001804)
264
188
-
Gly
CCC
[SRA]
>SRA1020509
SRR035083.125922
454 Sequencing (SRP001804)
114
190
+
Gly
CCC
[SRA]
>SRA1020722
SRR035083.155340
454 Sequencing (SRP001804)
190
114
-
Gly
CCC
[SRA]
>SRA1020786
SRR035083.164377
454 Sequencing (SRP001804)
118
194
+
Gly
CCC
[SRA]
>SRA1020791
SRR035083.165761
454 Sequencing (SRP001804)
487
411
-
Gly
CCC
[SRA]
>SRA1020862
SRR035083.174331
454 Sequencing (SRP001804)
283
359
+
Gly
CCC
[SRA]
>SRA1020991
SRR035083.194085
454 Sequencing (SRP001804)
456
380
-
Gly
CCC
[SRA]
>SRA1021019
SRR035083.198164
454 Sequencing (SRP001804)
90
166
+
Gly
CCC
[SRA]
>SRA1021046
SRR035083.203130
454 Sequencing (SRP001804)
512
436
-
Gly
CCC
[SRA]
>SRA1021092
SRR035083.207098
454 Sequencing (SRP001804)
298
222
-
Gly
CCC
[SRA]
>SRA1021227
SRR035083.226871
454 Sequencing (SRP001804)
149
73
-
Gly
CCC
[SRA]
>SRA1021237
SRR035083.227501
454 Sequencing (SRP001804)
212
288
+
Gly
CCC
[SRA]
>SRA1021345
SRR035083.246181
454 Sequencing (SRP001804)
250
326
+
Gly
CCC
[SRA]
>SRA1021521
SRR035083.268910
454 Sequencing (SRP001804)
158
82
-
Gly
CCC
[SRA]
>SRA1021571
SRR035083.274484
454 Sequencing (SRP001804)
151
75
-
Gly
CCC
[SRA]
>SRA1021621
SRR035083.283381
454 Sequencing (SRP001804)
401
325
-
Gly
CCC
[SRA]
>SRA1021635
SRR035083.283981
454 Sequencing (SRP001804)
96
172
+
Gly
CCC
[SRA]
>SRA1021668
SRR035083.290163
454 Sequencing (SRP001804)
168
244
+
Gly
CCC
[SRA]
>SRA1021755
SRR035083.303250
454 Sequencing (SRP001804)
213
289
+
Gly
CCC
[SRA]
>SRA1021775
SRR035083.307125
454 Sequencing (SRP001804)
154
230
+
Gly
CCC
[SRA]
>SRA1021812
SRR035083.312786
454 Sequencing (SRP001804)
287
363
+
Gly
CCC
[SRA]
>SRA1021821
SRR035083.313621
454 Sequencing (SRP001804)
283
359
+
Gly
CCC
[SRA]
>SRA1021893
SRR035083.325842
454 Sequencing (SRP001804)
474
398
-
Gly
CCC
[SRA]
>SRA1021957
SRR035083.332140
454 Sequencing (SRP001804)
236
312
+
Gly
CCC
[SRA]
>SRA1021977
SRR035083.334022
454 Sequencing (SRP001804)
222
298
+
Gly
CCC
[SRA]
>SRA1021979
SRR035083.334105
454 Sequencing (SRP001804)
338
262
-
Gly
CCC
[SRA]
>SRA1022211
SRR035083.368690
454 Sequencing (SRP001804)
360
436
+
Gly
CCC
[SRA]
>SRA1022306
SRR035083.385990
454 Sequencing (SRP001804)
58
134
+
Gly
CCC
[SRA]
>SRA1022332
SRR035083.391196
454 Sequencing (SRP001804)
253
177
-
Gly
CCC
[SRA]
>SRA1022367
SRR035083.396988
454 Sequencing (SRP001804)
107
31
-
Gly
CCC
[SRA]
>SRA1022425
SRR035083.404026
454 Sequencing (SRP001804)
79
3
-
Gly
CCC
[SRA]
>SRA1022543
SRR035083.422478
454 Sequencing (SRP001804)
14
90
+
Gly
CCC
[SRA]
>SRA1022629
SRR035083.434893
454 Sequencing (SRP001804)
253
177
-
Gly
CCC
[SRA]
>SRA1022632
SRR035083.435168
454 Sequencing (SRP001804)
174
250
+
Gly
CCC
[SRA]
>SRA1022681
SRR035083.441849
454 Sequencing (SRP001804)
17
93
+
Gly
CCC
[SRA]
>SRA1022747
SRR035083.452797
454 Sequencing (SRP001804)
134
210
+
Gly
CCC
[SRA]
>SRA1022751
SRR035083.453626
454 Sequencing (SRP001804)
190
114
-
Gly
CCC
[SRA]
>SRA1022776
SRR035083.459045
454 Sequencing (SRP001804)
186
110
-
Gly
CCC
[SRA]
>SRA1022809
SRR035083.464497
454 Sequencing (SRP001804)
85
161
+
Gly
CCC
[SRA]
>SRA1022983
SRR035083.499516
454 Sequencing (SRP001804)
58
134
+
Gly
CCC
[SRA]
>SRA1023024
SRR035083.507057
454 Sequencing (SRP001804)
107
31
-
Gly
CCC
[SRA]
>SRA1023036
SRR035083.510010
454 Sequencing (SRP001804)
17
93
+
Gly
CCC
[SRA]
>SRA1023097
SRR035083.519587
454 Sequencing (SRP001804)
142
218
+
Gly
CCC
[SRA]
>SRA1029766
SRR035087.177920
454 Sequencing (SRP001808)
324
400
+
Gly
CCC
[SRA]
>SRA1030640
SRR035087.308359
454 Sequencing (SRP001808)
136
212
+
Gly
CCC
[SRA]
>SRA1031878
SRR035087.503017
454 Sequencing (SRP001808)
20
96
+
Gly
CCC
[SRA]
>SRA1032660
SRR035088.74569
454 Sequencing (SRP001809)
100
24
-
Gly
CCC
[SRA]
>SRA1032921
SRR035088.129455
454 Sequencing (SRP001809)
65
141
+
Gly
CCC
[SRA]
>SRA1033461
SRR035088.263752
454 Sequencing (SRP001809)
212
136
-
Gly
CCC
[SRA]
>SRA1035403
SRR035089.298918
454 Sequencing (SRP001810)
119
195
+
Gly
CCC
[SRA]
>SRA1035695
SRR035089.356123
454 Sequencing (SRP001810)
129
53
-
Gly
CCC
[SRA]
>SRA1036807
SRR035090.11567
454 Sequencing (SRP001811)
87
163
+
Gly
CCC
[SRA]
>SRA1036933
SRR035090.40669
454 Sequencing (SRP001811)
114
190
+
Gly
CCC
[SRA]
>SRA1036991
SRR035090.53621
454 Sequencing (SRP001811)
93
17
-
Gly
CCC
[SRA]
>SRA1037013
SRR035090.58841
454 Sequencing (SRP001811)
167
243
+
Gly
CCC
[SRA]
>SRA1037033
SRR035090.61985
454 Sequencing (SRP001811)
94
18
-
Gly
CCC
[SRA]
>SRA1037071
SRR035090.69528
454 Sequencing (SRP001811)
149
73
-
Gly
CCC
[SRA]
>SRA1037092
SRR035090.72392
454 Sequencing (SRP001811)
195
119
-
Gly
CCC
[SRA]
>SRA1037127
SRR035090.78196
454 Sequencing (SRP001811)
93
17
-
Gly
CCC
[SRA]
>SRA1037159
SRR035090.85920
454 Sequencing (SRP001811)
312
236
-
Gly
CCC
[SRA]
>SRA1037214
SRR035090.93871
454 Sequencing (SRP001811)
311
235
-
Gly
CCC
[SRA]
>SRA1037253
SRR035090.102365
454 Sequencing (SRP001811)
149
73
-
Gly
CCC
[SRA]
>SRA1037284
SRR035090.106895
454 Sequencing (SRP001811)
149
73
-
Gly
CCC
[SRA]
>SRA1037346
SRR035090.119970
454 Sequencing (SRP001811)
93
17
-
Gly
CCC
[SRA]
>SRA1037406
SRR035090.129464
454 Sequencing (SRP001811)
28
104
+
Gly
CCC
[SRA]
>SRA1037485
SRR035090.140937
454 Sequencing (SRP001811)
96
172
+
Gly
CCC
[SRA]
>SRA1037795
SRR035090.197545
454 Sequencing (SRP001811)
385
309
-
Gly
CCC
[SRA]
>SRA1037836
SRR035090.203069
454 Sequencing (SRP001811)
143
219
+
Gly
CCC
[SRA]
>SRA1037919
SRR035090.218523
454 Sequencing (SRP001811)
133
57
-
Gly
CCC
[SRA]
>SRA1037932
SRR035090.220785
454 Sequencing (SRP001811)
108
184
+
Gly
CCC
[SRA]
>SRA1037953
SRR035090.226155
454 Sequencing (SRP001811)
124
200
+
Gly
CCC
[SRA]
>SRA1037966
SRR035090.227109
454 Sequencing (SRP001811)
149
73
-
Gly
CCC
[SRA]
>SRA1038037
SRR035090.236199
454 Sequencing (SRP001811)
108
184
+
Gly
CCC
[SRA]
>SRA1038046
SRR035090.238766
454 Sequencing (SRP001811)
189
265
+
Gly
CCC
[SRA]
>SRA1038072
SRR035090.242060
454 Sequencing (SRP001811)
150
74
-
Gly
CCC
[SRA]
>SRA1038183
SRR035090.260027
454 Sequencing (SRP001811)
149
73
-
Gly
CCC
[SRA]
>SRA1038486
SRR035090.313928
454 Sequencing (SRP001811)
117
193
+
Gly
CCC
[SRA]
>SRA1038503
SRR035090.316428
454 Sequencing (SRP001811)
396
320
-
Gly
CCC
[SRA]
>SRA1038536
SRR035090.323715
454 Sequencing (SRP001811)
345
269
-
Gly
CCC
[SRA]
>SRA1038736
SRR035090.356813
454 Sequencing (SRP001811)
360
284
-
Gly
CCC
[SRA]
>SRA1038740
SRR035090.357552
454 Sequencing (SRP001811)
245
321
+
Gly
CCC
[SRA]
>SRA1038798
SRR035090.367677
454 Sequencing (SRP001811)
101
177
+
Gly
CCC
[SRA]
>SRA1038864
SRR035090.382779
454 Sequencing (SRP001811)
245
321
+
Gly
CCC
[SRA]
>SRA1039082
SRR035090.421046
454 Sequencing (SRP001811)
161
237
+
Gly
CCC
[SRA]
>SRA1039084
SRR035090.421427
454 Sequencing (SRP001811)
245
321
+
Gly
CCC
[SRA]
>SRA1039099
SRR035090.424474
454 Sequencing (SRP001811)
117
193
+
Gly
CCC
[SRA]
>SRA1039104
SRR035090.425896
454 Sequencing (SRP001811)
185
261
+
Gly
CCC
[SRA]
>SRA1039110
SRR035090.427029
454 Sequencing (SRP001811)
117
193
+
Gly
CCC
[SRA]
>SRA1039158
SRR035090.433793
454 Sequencing (SRP001811)
142
66
-
Gly
CCC
[SRA]
>SRA1039164
SRR035090.435380
454 Sequencing (SRP001811)
367
291
-
Gly
CCC
[SRA]
>SRA1039231
SRR035090.447861
454 Sequencing (SRP001811)
292
368
+
Gly
CCC
[SRA]
>SRA1039260
SRR035090.453555
454 Sequencing (SRP001811)
245
321
+
Gly
CCC
[SRA]
>SRA1039275
SRR035090.455627
454 Sequencing (SRP001811)
245
321
+
Gly
CCC
[SRA]
>SRA1039421
SRR035090.487701
454 Sequencing (SRP001811)
217
293
+
Gly
CCC
[SRA]
>SRA1039716
SRR035090.553261
454 Sequencing (SRP001811)
400
324
-
Gly
CCC
[SRA]
>SRA1039736
SRR035090.556140
454 Sequencing (SRP001811)
265
341
+
Gly
CCC
[SRA]
>SRA1039758
SRR035090.561059
454 Sequencing (SRP001811)
440
516
+
Gly
CCC
[SRA]
>SRA1039809
SRR035090.574738
454 Sequencing (SRP001811)
79
3
-
Gly
CCC
[SRA]
>SRA1039819
SRR035090.576609
454 Sequencing (SRP001811)
350
426
+
Gly
CCC
[SRA]
>SRA1039852
SRR035090.583758
454 Sequencing (SRP001811)
293
369
+
Gly
CCC
[SRA]
>SRA1039881
SRR035090.590435
454 Sequencing (SRP001811)
158
82
-
Gly
CCC
[SRA]
>SRA1039932
SRR035090.606211
454 Sequencing (SRP001811)
109
185
+
Gly
CCC
[SRA]
>SRA1040692
SRR035091.133956
454 Sequencing (SRP001812)
362
438
+
Gly
CCC
[SRA]
>SRA1045215
SRR035093.32691
454 Sequencing (SRP001814)
13
89
+
Gly
CCC
[SRA]
>SRA1045810
SRR035093.173783
454 Sequencing (SRP001814)
322
246
-
Gly
CCC
[SRA]
>SRA1046989
SRR035093.430227
454 Sequencing (SRP001814)
107
183
+
Gly
CCC
[SRA]
>SRA1047519
SRR035093.564664
454 Sequencing (SRP001814)
138
62
-
Gly
CCC
[SRA]
>SRA1047565
SRR035093.580943
454 Sequencing (SRP001814)
121
197
+
Gly
CCC
[SRA]
>SRA1052817
SRR035098.281277
454 Sequencing (SRP001819)
83
7
-
Gly
CCC
[SRA]
>SRA1053322
SRR035098.382486
454 Sequencing (SRP001819)
325
401
+
Gly
CCC
[SRA]
>SRA1054232
SRR035099.89155
454 Sequencing (SRP001820)
378
454
+
Gly
CCC
[SRA]
>SRA1054244
SRR035099.91592
454 Sequencing (SRP001820)
320
244
-
Gly
CCC
[SRA]
>SRA1054389
SRR035099.120914
454 Sequencing (SRP001820)
319
243
-
Gly
CCC
[SRA]
>SRA1054395
SRR035099.123341
454 Sequencing (SRP001820)
299
223
-
Gly
CCC
[SRA]
>W1610947171
LUZT01000004
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
53467
53394
-
Gly
CCC
[ENA]
¡û
>W1610977648
LVWG01000029
Chlorobiota
Pelodictyon luteolum [LVWG]
17013
17088
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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