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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458586 (42 seq.)
>W1710865008
LMGI01000002
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
1378825
1378752
-
Cys
GCA
[ENA]
¡û
>W1710912518
LNRR01000005
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
170941
171014
+
Cys
GCA
[ENA]
¡û
>W1710912553
LNRS01000002
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
410025
410098
+
Cys
GCA
[ENA]
¡û
>W1710912606
LNRT01000004
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
141397
141470
+
Cys
GCA
[ENA]
¡û
>W1710912666
LNRU01000007
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
170922
170995
+
Cys
GCA
[ENA]
¡û
>W1712105804
NISK01000001
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
931705
931778
+
Cys
GCA
[ENA]
¡û
>WENV170012376
APMI01164458
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
263
336
+
Cys
GCA
[ENA]
¡û
>WENV170024478
BCQL01066017
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
475
402
-
Cys
GCA
[ENA]
¡û
>WENV170231034
CEQH01112653
[CEQH] marine metagenome genome assembly TARA_076_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1508
1581
+
Cys
GCA
[ENA]
¡û
>W141700157
JMIW01000008
Alphaproteobacteria
Erythrobacter longus [JMIW]
333
260
-
Cys
GCA
[ENA]
¡û
>W1911532518
OGVD01000004
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
491172
491245
+
Cys
GCA
[ENA]
¡û
>C151044365
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
54368
54441
+
Cys
GCA
[Ensembl]
¡û
>W2010302752
CABVLF010000004
Alphaproteobacteria
Erythrobacter sp. EC-HK427 [CABVLF]
323274
323347
+
Cys
GCA
[ENA]
¡û
>W2010311915
CABWNA010000004
Alphaproteobacteria
Sphingomonas sp. AX6 [CABWNA]
411273
411200
-
Cys
GCA
[ENA]
¡û
>W2011165277
OGVD01000004
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
491172
491245
+
Cys
GCA
[ENA]
¡û
>W2011539385
SCNS01000003
Alphaproteobacteria
Sphingomonadaceae bacterium 3R27C6 [SCNS]
276664
276591
-
Cys
GCA
[ENA]
¡û
>W2011858044
UNRC01000002
Alphaproteobacteria
Sphingorhabdus sp. Alg239-R122 [UNRC]
85598
85671
+
Cys
GCA
[ENA]
¡û
>W2012439278
WTYP01000002
Alphaproteobacteria
Altererythrobacter luteolus SW-109 [WTYP]
41749
41676
-
Cys
GCA
[ENA]
¡û
>W2012439386
WTYS01000001
Alphaproteobacteria
Altererythrobacter gangjinensis JCM 17802 [WTYS]
949997
950070
+
Cys
GCA
[ENA]
¡û
>W2012439635
WTYX01000002
Alphaproteobacteria
Altererythrobacter aquaemixtae KCTC 52763 [WTYX]
907744
907817
+
Cys
GCA
[ENA]
¡û
>W2012439673
WTYZ01000001
Alphaproteobacteria
Altererythrobacter aestiaquae KCTC 42006 [WTYZ]
877705
877778
+
Cys
GCA
[ENA]
¡û
>W2110372811
JADQTN010000001
Alphaproteobacteria
Pontixanthobacter sp. CEM42 [JADQTN]
2065365
2065292
-
Cys
GCA
[ENA]
¡û
>C211173222
CP063202
Alphaproteobacteria
Erythrobacter sp. SCSIO 43205 [CP063202]
3289373
3289300
-
Cys
GCA
-
¡û
>C231232398
CP086727
Alphaproteobacteria
Parasphingorhabdus litoris DSM 22379 [CP086727]
1245457
1245530
+
Cys
GCA
-
¡û
>C231571925
CP115966
Alphaproteobacteria
Erythrobacteraceae bacterium WH01K [CP115966]
2670379
2670306
-
Cys
GCA
-
¡û
>C241148302
CP051130
Alphaproteobacteria
Parasphingopyxis sp. CP4 [CP051130]
745937
745864
-
Cys
GCA
-
¡û
>C241149604
CP051217
Alphaproteobacteria
Parasphingorhabdus halotolerans JK6 [CP051217]
2730998
2731071
+
Cys
GCA
-
¡û
>W1511221217
JNFD01000035
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
93345
93272
-
Cys
GCA
[ENA]
¡û
>W1511591712
LBHU01000001
Alphaproteobacteria
Aurantiacibacter marinus HWDM-33 [LBHU]
342634
342707
+
Cys
GCA
[ENA]
¡û
>W1511629870
LDCP01000001
Alphaproteobacteria
Aurantiacibacter marinus KCTC 23554 [LDCP]
995463
995390
-
Cys
GCA
[ENA]
¡û
>W1610719723
LMAF01000002
Alphaproteobacteria
Erythrobacter sp. YT30 [LMAF]
1511821
1511894
+
Cys
GCA
[ENA]
¡û
>W1610770877
LNRR01000005
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
170941
171014
+
Cys
GCA
[ENA]
¡û
>W1610770912
LNRS01000002
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
410025
410098
+
Cys
GCA
[ENA]
¡û
>W1610770965
LNRT01000004
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
141397
141470
+
Cys
GCA
[ENA]
¡û
>W1610771046
LNRV01000005
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
141420
141493
+
Cys
GCA
[ENA]
¡û
>W1610771101
LNRW01000007
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
85187
85114
-
Cys
GCA
[ENA]
¡û
>W1610771146
LNRX01000006
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
141320
141393
+
Cys
GCA
[ENA]
¡û
>W1610912346
LSIE01000067
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
12035
11962
-
Cys
GCA
[ENA]
¡û
>W1610914454
LSKD01000080
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
21548
21475
-
Cys
GCA
[ENA]
¡û
>W1610914906
LSKO01001133
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
21554
21481
-
Cys
GCA
[ENA]
¡û
>WENV081186
ABEF01033761
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
621
548
-
Cys
GCA
[ENA]
>W1710593915
FSQW01000002
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
1579109
1579036
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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