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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46251 (126 seq.)
>W1710801418
LJWU01000044
Gammaproteobacteria
Pseudomonas mediterranea [LJWU]
60448
60359
-
Ser
CGA
[ENA]
¡û
>W1710861372
LMDO01000014
Gammaproteobacteria
Pseudomonas sp. Root401 [LMDO]
109801
109890
+
Ser
CGA
[ENA]
¡û
>W1710888907
LNAB02000014
Gammaproteobacteria
Pseudomonas fluorescens [LNAB]
79931
80020
+
Ser
CGA
[ENA]
¡û
>W1710931210
LOHF01000004
Gammaproteobacteria
Pseudomonas caspiana [LOHF]
8202
8291
+
Ser
CGA
[ENA]
¡û
>W1711052088
LRSO01000020
Gammaproteobacteria
Pseudomonas thivervalensis [LRSO]
43699
43788
+
Ser
CGA
[ENA]
¡û
>W1711353410
MDEN01000052
Gammaproteobacteria
Pseudomonas graminis [MDEN]
13568
13657
+
Ser
CGA
[ENA]
¡û
>W1711744536
MUIN01000006
Gammaproteobacteria
Pseudomonas sp. Bc-h [MUIN]
422143
422232
+
Ser
CGA
[ENA]
¡û
>W1711751753
MUOA01000045
Gammaproteobacteria
Pseudomonas sp. A25(2017) [MUOA]
117291
117380
+
Ser
CGA
[ENA]
¡û
>W1711797757
MWTP01000363
Gammaproteobacteria
Pseudomonas ogarae Ea RS28 [MWTP]
1139
1228
+
Ser
CGA
[ENA]
¡û
>W1711797794
MWTQ01000018
Gammaproteobacteria
Pseudomonas ogarae Ep R1 [MWTQ]
294029
294118
+
Ser
CGA
[ENA]
¡û
>C171030670
CP014262
Gammaproteobacteria
Pseudomonas corrugata RM1-1-4 [CP014262]
5171773
5171862
+
Ser
CGA
-
¡û
>C171033239
CP014693
Gammaproteobacteria
Pseudomonas brassicacearum L13-6-12 [CP014693]
2172963
2172874
-
Ser
CGA
-
¡û
>W131066377
ANOR01000110
Gammaproteobacteria
Pseudomonas fluorescens Pf29Arp [ANOR]
178414
178325
-
Ser
CGA
[ENA]
¡û
>W141079115
ATKI01000085
Gammaproteobacteria
Pseudomonas corrugata CFBP 5454 [ATKI]
4934
5023
+
Ser
CGA
[ENA]
¡û
>W141079399
ATLN01000082
Gammaproteobacteria
Pseudomonas sp. CFII68 [ATLN]
12950
12861
-
Ser
CGA
[ENA]
¡û
>W141091271
AUYO01000015
Gammaproteobacteria
gamma proteobacterium L18 [AUYO]
5030
5119
+
Ser
CGA
[ENA]
¡û
>W141095820
AVEQ01000114
Gammaproteobacteria
Pseudomonas syringae UB246 [AVEQ]
8044
8133
+
Ser
CGA
[ENA]
¡û
>W141096593
AVFN01000005
Gammaproteobacteria
Pseudomonas kilonensis S12 [AVFN]
58688
58777
+
Ser
CGA
[ENA]
¡û
>WENV181191057
OEPS010018737
[OEPS] soil metagenome; soil
744
833
+
Ser
CGA
[ENA]
¢þ
>WENV181380353
OFRD01065884
[OFRD] wastewater metagenome; Exp Tend CN 100WW
289
200
-
Ser
CGA
[ENA]
¢þ
>WENV181384436
OFRI01000965
[OFRI] wastewater metagenome; Exp Tend VB 90WW
4905
4994
+
Ser
CGA
[ENA]
¢þ
>WENV181399067
OFSE01009354
[OFSE] wastewater metagenome; Exp Tend VB 50WW
1072
983
-
Ser
CGA
[ENA]
¢þ
>W141207871
AZOC01000029
Gammaproteobacteria
Pseudomonas brassicacearum 51MFCVI2.1 [AZOC]
80617
80706
+
Ser
CGA
[ENA]
¡û
>W141217486
AZVP01000017
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I7 [AZVP]
146467
146378
-
Ser
CGA
[ENA]
¡û
>WENV170700391
LIDZ01013307
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
150007
149918
-
Ser
CGA
[ENA]
¢þ
>WENV170707674
LNAP01029133
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3625
3714
+
Ser
CGA
[ENA]
¢þ
>C181118796
CP025542
Gammaproteobacteria
Pseudomonas fluorescens 2P24 [CP025542]
1636249
1636338
+
Ser
CGA
-
¡û
>C181203117
CP031648
Gammaproteobacteria
Pseudomonas fluorescens Pf275 [CP031648]
509143
509232
+
Ser
CGA
-
¡û
>C191087643
CP032311
Gammaproteobacteria
Pseudomonas sp. DG56-2 [CP032311]
4460073
4459984
-
Ser
CGA
-
¡û
>C191134305
CP035088
Gammaproteobacteria
Pseudomonas viciae 11K1 [CP035088]
1591890
1591979
+
Ser
CGA
-
¡û
>C191147624
CP035952
Gammaproteobacteria
Pseudomonas tructae SNU WT1 [CP035952]
1751626
1751715
+
Ser
CGA
-
¡û
>W1910504927
FYDU01000003
Gammaproteobacteria
Pseudomonas sp. Irchel 3A5 [FYDU]
327430
327341
-
Ser
CGA
[ENA]
¡û
>W1910505100
FYDX01000002
Gammaproteobacteria
Pseudomonas sp. Irchel 3E13 [FYDX]
143383
143294
-
Ser
CGA
[ENA]
¡û
>W1910620291
LKBT01000014
Gammaproteobacteria
Pseudomonas sp. ICMP 561 [LKBT]
55097
55186
+
Ser
CGA
[ENA]
¡û
>W1910621066
LKCG01001095
Gammaproteobacteria
Pseudomonas sp. NZIPFR-PS5 [LKCG]
223
312
+
Ser
CGA
[ENA]
¡û
>W1910743863
MHZN01000208
Gammaproteobacteria
Pseudomonadales bacterium RIFCSPLOWO2_12_59_9 [MHZN]
8121
8032
-
Ser
CGA
[ENA]
¡û
>W1910767114
MOBC01000010
Gammaproteobacteria
Pseudomonas brassicacearum Wood3 [MOBC]
76911
76822
-
Ser
CGA
[ENA]
¡û
>W1910767148
MOBD01000001
Gammaproteobacteria
Pseudomonas brassicacearum 36B7 [MOBD]
1411803
1411714
-
Ser
CGA
[ENA]
¡û
>W1910767216
MOBE01000006
Gammaproteobacteria
Pseudomonas brassicacearum 36D4 [MOBE]
299581
299492
-
Ser
CGA
[ENA]
¡û
>W1910767282
MOBF01000011
Gammaproteobacteria
Pseudomonas brassicacearum 93F8 [MOBF]
361638
361549
-
Ser
CGA
[ENA]
¡û
>W1910767345
MOBG01000006
Gammaproteobacteria
Pseudomonas brassicacearum Wood1 [MOBG]
80326
80415
+
Ser
CGA
[ENA]
¡û
>W1910767373
MOBH01000001
Gammaproteobacteria
Pseudomonas brassicacearum Delaware [MOBH]
336800
336711
-
Ser
CGA
[ENA]
¡û
>W1910792860
MRCO01000002
Gammaproteobacteria
Pseudomonas ogarae ACN4 [MRCO]
277965
277876
-
Ser
CGA
[ENA]
¡û
>W1910793049
MRCR01000027
Gammaproteobacteria
Pseudomonas ogarae ACN7 [MRCR]
77239
77328
+
Ser
CGA
[ENA]
¡û
>W1910977098
NKHL01000120
Gammaproteobacteria
Pseudomonas bohemica IA19 [NKHL]
188650
188739
+
Ser
CGA
[ENA]
¡û
>W1911618722
PPRZ01000087
Gammaproteobacteria
Pseudomonas sp. MPBD7-1 [PPRZ]
25458
25547
+
Ser
CGA
[ENA]
¡û
>W1911636113
PVUC01000004
Gammaproteobacteria
Pseudomonas sp. NFACC50-1 [PVUC]
332805
332716
-
Ser
CGA
[ENA]
¡û
>W1911638714
PVZA01000007
Gammaproteobacteria
Pseudomonas sp. NFACC11-2 [PVZA]
357052
357141
+
Ser
CGA
[ENA]
¡û
>W1911783564
QXTJ01000015
Gammaproteobacteria
Pseudomonas sp. LS-2 [QXTJ]
195416
195327
-
Ser
CGA
[ENA]
¡û
>W1810109988
PHHS01000013
Gammaproteobacteria
Pseudomonas sp. WCS365 [PHHS]
80126
80215
+
Ser
CGA
[ENA]
¡û
>W1810486486
QAXX01000013
Gammaproteobacteria
Pseudomonas sp. GV012 [QAXX]
149009
148920
-
Ser
CGA
[ENA]
¡û
>W1810503829
QBKK01000013
Gammaproteobacteria
Pseudomonas sp. GV021 [QBKK]
149009
148920
-
Ser
CGA
[ENA]
¡û
>W1810573058
QEKL01000001
Gammaproteobacteria
Pseudomonas kilonensis ZKA7 [QEKL]
4542218
4542129
-
Ser
CGA
[ENA]
¡û
>W1810580762
QETK01000021
Gammaproteobacteria
Pseudomonas sp. SDI [QETK]
40488
40399
-
Ser
CGA
[ENA]
¡û
>W1810594894
QGDM01000016
Gammaproteobacteria
Pseudomonas sp. 43mfcvi1.1 43mfcvi1.1 43MFCvi1.1 [QGDM]
101554
101465
-
Ser
CGA
[ENA]
¡û
>W1810682822
QKVL01000001
Gammaproteobacteria
Pseudomonas huaxiensis WCHPs060044 [QKVL]
598797
598886
+
Ser
CGA
[ENA]
¡û
>W1810762791
QQAQ01000003
Gammaproteobacteria
Pseudomonas fluorescens AG1429 [QQAQ]
80131
80220
+
Ser
CGA
[ENA]
¡û
>SRA1016187
SRR023846.389028
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
149
238
+
Ser
CGA
[SRA]
>C151023068
CP007410
Gammaproteobacteria
Pseudomonas brassicacearum DF41 [CP007410]
1661922
1662011
+
Ser
CGA
[Ensembl]
¡û
>C151042346
CP009048
Gammaproteobacteria
Pseudomonas alkylphenolica KL28 [CP009048]
4395608
4395519
-
Ser
CGA
[Ensembl]
¡û
>C151075494
CP011020
Gammaproteobacteria
Pseudomonas chlororaphis UFB2 [CP011020]
5999355
5999266
-
Ser
CGA
[Ensembl]
¡û
>W1510000600
AUPB01000037
Gammaproteobacteria
Pseudomonas mediterranea CFBP 5447 [AUPB]
435283
435194
-
Ser
CGA
[ENA]
¡û
>W1510014846
BBQJ01000004
Gammaproteobacteria
Pseudomonas abietaniphila KF701 [BBQJ]
35848
35759
-
Ser
CGA
[ENA]
¡û
>W1510015314
BBQR01000017
Gammaproteobacteria
Pseudomonas abietaniphila KF717 [BBQR]
35929
35840
-
Ser
CGA
[ENA]
¡û
>W1510800376
JBON01000007
Gammaproteobacteria
Pseudomonas brassicacearum PA1G7 [JBON]
298306
298395
+
Ser
CGA
[ENA]
¡û
>C11116923
CP002585
Gammaproteobacteria
Pseudomonas brassicacearum subsp. brassicacearum NFM421 [CP002585]
1655561
1655650
+
Ser
CGA
[Ensembl]
¡û
>W1511220586
JNCR01000013
Gammaproteobacteria
Pseudomonas brassicacearum LZ-4 [JNCR]
84474
84385
-
Ser
CGA
[ENA]
¡û
>W1511350303
JRMB01000002
Gammaproteobacteria
Pseudomonas lutea DSM 17257 [JRMB]
425651
425562
-
Ser
CGA
[ENA]
¡û
>W1511507934
JXOE01000028
Gammaproteobacteria
Pseudomonas fluorescens DSM 8569 [JXOE]
35506
35417
-
Ser
CGA
[ENA]
¡û
>W1511555729
JZXC01000030
Gammaproteobacteria
Pseudomonas ogarae 1855-344 [JZXC]
4859
4770
-
Ser
CGA
[ENA]
¡û
>W11187651
CAFF01000642
Gammaproteobacteria
Pseudomonas fluorescens Wood1R [CAFF]
5006
5095
+
Ser
CGA
[ENA]
¡û
>C121006787
CP003150
Gammaproteobacteria
Pseudomonas ogarae F113 [CP003150]
1651966
1652055
+
Ser
CGA
[Ensembl]
¡û
>C161043435
CP012680
Gammaproteobacteria
Pseudomonas brassicacearum LBUM300 [CP012680]
1900379
1900468
+
Ser
CGA
-
¡û
>C161046033
CP012831
Gammaproteobacteria
Pseudomonas fluorescens FW300-N2C3 [CP012831]
1019810
1019721
-
Ser
CGA
[Ensembl]
¡û
>C161084822
CP015225
Gammaproteobacteria
Pseudomonas fluorescens FW300-N2E2 [CP015225]
3236966
3236877
-
Ser
CGA
[Ensembl]
¡û
>W121007893
AGBM01000001
Gammaproteobacteria
Pseudomonas fluorescens Q2-87 [AGBM]
1565818
1565907
+
Ser
CGA
[ENA]
¡û
>W121039087
AHPO01000001
Gammaproteobacteria
Pseudomonas fluorescens Q8r1-96 [AHPO]
121266
121177
-
Ser
CGA
[ENA]
¡û
>W121070326
AJWX01000002
Gammaproteobacteria
Pseudomonas sp. M47T1 [AJWX]
255045
255134
+
Ser
CGA
[ENA]
¡û
>W1610030085
AYJR01000041
Gammaproteobacteria
Pseudomonas brassicacearum PP1_210F [AYJR]
68702
68613
-
Ser
CGA
[ENA]
¡û
>W1610082923
CBLV010000211
Gammaproteobacteria
Pseudomonas sp. SHC52 [CBLV]
2556
2467
-
Ser
CGA
[ENA]
¡û
>W1610628452
LIGN01000018
Gammaproteobacteria
Pseudomonas mediterranea [LIGN]
133138
133227
+
Ser
CGA
[ENA]
¡û
>W1610628483
LIGO01000046
Gammaproteobacteria
Pseudomonas corrugata [LIGO]
43165
43076
-
Ser
CGA
[ENA]
¡û
>W1610628583
LIGR01000019
Gammaproteobacteria
Pseudomonas corrugata [LIGR]
33887
33976
+
Ser
CGA
[ENA]
¡û
>W1610628957
LIGZ01000021
Gammaproteobacteria
Pseudomonas mediterranea [LIGZ]
29232
29143
-
Ser
CGA
[ENA]
¡û
>W1610629193
LIHG01000009
Gammaproteobacteria
Pseudomonas mediterranea [LIHG]
502364
502275
-
Ser
CGA
[ENA]
¡û
>W1610629231
LIHH01000015
Gammaproteobacteria
Pseudomonas corrugata [LIHH]
44943
45032
+
Ser
CGA
[ENA]
¡û
>W1610665375
LJWU01000044
Gammaproteobacteria
Pseudomonas mediterranea [LJWU]
60448
60359
-
Ser
CGA
[ENA]
¡û
>W1610723718
LMDO01000014
Gammaproteobacteria
Pseudomonas sp. Root401 [LMDO]
109801
109890
+
Ser
CGA
[ENA]
¡û
>W1610749285
LNAB02000014
Gammaproteobacteria
Pseudomonas fluorescens [LNAB]
79931
80020
+
Ser
CGA
[ENA]
¡û
>W1610893276
LRSO01000020
Gammaproteobacteria
Pseudomonas thivervalensis [LRSO]
43699
43788
+
Ser
CGA
[ENA]
¡û
>W1710027223
AYJR01000041
Gammaproteobacteria
Pseudomonas brassicacearum PP1_210F [AYJR]
68702
68613
-
Ser
CGA
[ENA]
¡û
>W1710088151
CBLV010000211
Gammaproteobacteria
Pseudomonas sp. SHC52 [CBLV]
2556
2467
-
Ser
CGA
[ENA]
¡û
>W1710505083
FMTK01000026
Gammaproteobacteria
Pseudomonas sp. NFACC56-3 [FMTK]
17602
17513
-
Ser
CGA
[ENA]
¡û
>W1710505419
FMTR01000011
Gammaproteobacteria
Pseudomonas sp. NFACC05-1 [FMTR]
80849
80938
+
Ser
CGA
[ENA]
¡û
>W1710507100
FMUZ01000023
Gammaproteobacteria
Pseudomonas sp. NFACC37-1 [FMUZ]
5410
5321
-
Ser
CGA
[ENA]
¡û
>W1710508358
FMWA01000021
Gammaproteobacteria
Pseudomonas sp. NFACC44-2 [FMWA]
33739
33650
-
Ser
CGA
[ENA]
¡û
>W1710509570
FMXH01000017
Gammaproteobacteria
Pseudomonas sp. NFACC51 [FMXH]
74507
74418
-
Ser
CGA
[ENA]
¡û
>W1710509681
FMXJ01000025
Gammaproteobacteria
Pseudomonas sp. NFACC15-1 [FMXJ]
82735
82824
+
Ser
CGA
[ENA]
¡û
>W1710510260
FMXV01000011
Gammaproteobacteria
Pseudomonas sp. NFACC13-1 [FMXV]
108885
108796
-
Ser
CGA
[ENA]
¡û
>W1710510531
FMYA01000022
Gammaproteobacteria
Pseudomonas sp. NFACC17-2 [FMYA]
8288
8377
+
Ser
CGA
[ENA]
¡û
>W1710516415
FNCO01000005
Gammaproteobacteria
Pseudomonas abietaniphila [FNCO]
155813
155724
-
Ser
CGA
[ENA]
¡û
>W1710528741
FNNL01000015
Gammaproteobacteria
Pseudomonas sp. NFACC08-1 [FNNL]
99434
99345
-
Ser
CGA
[ENA]
¡û
>W1710529528
FNOA01000023
Gammaproteobacteria
Pseudomonas sp. NFACC14 [FNOA]
18557
18468
-
Ser
CGA
[ENA]
¡û
>W1710537333
FNTT01000002
Gammaproteobacteria
Pseudomonas kilonensis [FNTT]
2934583
2934672
+
Ser
CGA
[ENA]
¡û
>W1710541352
FNYG01000018
Gammaproteobacteria
Pseudomonas sp. NFACC07-1 [FNYG]
81335
81424
+
Ser
CGA
[ENA]
¡û
>W1710541496
FNYJ01000003
Gammaproteobacteria
Pseudomonas sp. NFR16 [FNYJ]
400003
400092
+
Ser
CGA
[ENA]
¡û
>W1710542815
FNZL01000005
Gammaproteobacteria
Pseudomonas sp. NFACC23-1 [FNZL]
8324
8413
+
Ser
CGA
[ENA]
¡û
>W1710548049
FODL01000004
Gammaproteobacteria
Pseudomonas sp. NFACC39-1 [FODL]
252076
252165
+
Ser
CGA
[ENA]
¡û
>W1710549525
FOEO01000027
Gammaproteobacteria
Pseudomonas sp. NFACC02 [FOEO]
34735
34646
-
Ser
CGA
[ENA]
¡û
>W1710553751
FOHW01000019
Gammaproteobacteria
Pseudomonas graminis [FOHW]
84338
84249
-
Ser
CGA
[ENA]
¡û
>W1710556569
FOKH01000034
Gammaproteobacteria
Pseudomonas sp. NFIX10 [FOKH]
73413
73502
+
Ser
CGA
[ENA]
¡û
>W1710560440
FONJ01000031
Gammaproteobacteria
Pseudomonas sp. NFACC06-1 [FONJ]
1562
1473
-
Ser
CGA
[ENA]
¡û
>W1710563328
FOPO01000019
Gammaproteobacteria
Pseudomonas sp. NFACC45 [FOPO]
40770
40859
+
Ser
CGA
[ENA]
¡û
>W1710563532
FOPT01000010
Gammaproteobacteria
Pseudomonas sp. NFACC54 [FOPT]
79537
79626
+
Ser
CGA
[ENA]
¡û
>W1710567233
FOSO01000028
Gammaproteobacteria
Pseudomonas sp. NFACC52 [FOSO]
17602
17513
-
Ser
CGA
[ENA]
¡û
>W1710568077
FOTH01000004
Gammaproteobacteria
Pseudomonas sp. NFACC46-3 [FOTH]
141978
141889
-
Ser
CGA
[ENA]
¡û
>W1710571211
FOVS01000024
Gammaproteobacteria
Pseudomonas sp. NFACC24-1 [FOVS]
59776
59687
-
Ser
CGA
[ENA]
¡û
>W1710576963
FPAL01000002
Gammaproteobacteria
Pseudomonas sp. NFACC48-1 [FPAL]
74445
74356
-
Ser
CGA
[ENA]
¡û
>W1710579903
FPIX01000005
Gammaproteobacteria
Pseudomonas sp. NFACC16-2 [FPIX]
8302
8391
+
Ser
CGA
[ENA]
¡û
>W1710580185
FPJC01000017
Gammaproteobacteria
Pseudomonas sp. NFACC04-2 [FPJC]
85517
85428
-
Ser
CGA
[ENA]
¡û
>W1710759625
LIGN01000018
Gammaproteobacteria
Pseudomonas mediterranea [LIGN]
133138
133227
+
Ser
CGA
[ENA]
¡û
>W1710759656
LIGO01000046
Gammaproteobacteria
Pseudomonas corrugata [LIGO]
43165
43076
-
Ser
CGA
[ENA]
¡û
>W1710759716
LIGR01000019
Gammaproteobacteria
Pseudomonas corrugata [LIGR]
33887
33976
+
Ser
CGA
[ENA]
¡û
>W1710760090
LIGZ01000021
Gammaproteobacteria
Pseudomonas mediterranea [LIGZ]
29232
29143
-
Ser
CGA
[ENA]
¡û
>W1710760326
LIHG01000009
Gammaproteobacteria
Pseudomonas mediterranea [LIHG]
502364
502275
-
Ser
CGA
[ENA]
¡û
>W1710760364
LIHH01000015
Gammaproteobacteria
Pseudomonas corrugata [LIHH]
44943
45032
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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