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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.474892 (57 seq.)
>W1710797265
LJSX01000007
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
138592
138665
+
Gln
CTG
[ENA]
¡û
>W131051718
AMXU01000014
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
47176
47103
-
Gln
CTG
[ENA]
¡û
>W131222254
AUBC01000022
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
6234
6307
+
Gln
CTG
[ENA]
¡û
>W1711571772
MNAO01000413
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
2717
2644
-
Gln
CTG
[ENA]
¡û
>PL171000335
CP001511
Alphaproteobacteria
Methylobacterium extorquens AM1 plasmid:megaplasmid
1162482
1162555
+
Gln
CTG
[ENA]
¡û
>WENV180353951
OBLQ011225432
[OBLQ] soil metagenome; soil
118
45
-
Gln
CTG
[ENA]
¡û
>w001826
AAAP01003110
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
1324
1254
-
Gln
CTG
[ENA]
¡û
>WENV181228050
OFDN01129959
[OFDN] hot springs metagenome; Water
267
194
-
Gln
CTG
[ENA]
¡û
>WENV181234368
OFEU01000071
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
138554
138627
+
Gln
CTG
[ENA]
¡û
>W141148471
AWXZ01000006
Alphaproteobacteria
Lutibaculum baratangense AMV1 [AWXZ]
618
545
-
Gln
CTG
[ENA]
¡û
>C08006500
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
4837976
4838049
+
Gln
CTG
[Ensembl]
¡û
>C08006647
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
5197229
5197302
+
Gln
CTG
[Ensembl]
¡û
>ENV08001914
ABOK01009227
mosquito metagenome; viral fraction from Mung bean nuclease digestion of DNA from mixed species mosquitoes collected in Mission Valley in San Diego, CA
84
11
-
Gln
CTG
[ENA]
¡û
>ENV08001919
ABOK01017442
mosquito metagenome; viral fraction from Mung bean nuclease digestion of DNA from mixed species mosquitoes collected in Mission Valley in San Diego, CA
90
17
-
Gln
CTG
[ENA]
¡û
>WENV170645733
JPYU01023622
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
441
368
-
Gln
CTG
[ENA]
¡û
>WENV170683294
LFIK01008403
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
6843
6916
+
Gln
CTG
[ENA]
¡û
>C181227877
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
976875
976802
-
Gln
CTG
-
¡û
>W09106830
ABEC01000001
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
356964
357037
+
Gln
CTG
[ENA]
¡û
>C09107430
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
5003234
5003307
+
Gln
CTG
[Ensembl]
¡û
>C09107516
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
5288636
5288709
+
Gln
CTG
[Ensembl]
¡û
>W1910547477
FZNU01000014
Alphaproteobacteria
Tistlia consotensis DSM 21585 [FZNU]
78224
78297
+
Gln
CTG
[ENA]
¡û
>SRA1015924
SRR023846.264539
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
161
234
+
Gln
CTG
[SRA]
>W2010100659
BJVP01000027
Alphaproteobacteria
Methylorubrum extorquens NBRC 15911 [BJVP]
44134
44207
+
Gln
CTG
[ENA]
¡û
>W2010429238
FZNU01000014
Alphaproteobacteria
Tistlia consotensis DSM 21585 [FZNU]
78224
78297
+
Gln
CTG
[ENA]
¡û
>W2010535235
JAAPAY010000044
Alphaproteobacteria
Methylobacterium sp. ISTM1 [JAAPAY]
61026
60953
-
Gln
CTG
[ENA]
¡û
>W2010712761
JACHOP010000031
Alphaproteobacteria
Methylorubrum rhodinum DSM 2163 [JACHOP]
50721
50794
+
Gln
CTG
[ENA]
¡û
>W2010740302
JACJIB010000004
Alphaproteobacteria
Methylorubrum thiocyanatum DSM 11490 [JACJIB]
27398
27325
-
Gln
CTG
[ENA]
¡û
>W2011398161
RCIG01000029
Alphaproteobacteria
Methylobacterium sp. DB1607 [RCIG]
43151
43224
+
Gln
CTG
[ENA]
¡û
>W2011540776
SCOS01000022
Alphaproteobacteria
Methylobacterium sp. L1A1 [SCOS]
20755
20682
-
Gln
CTG
[ENA]
¡û
>W2011602654
SIUB01000001
Alphaproteobacteria
Hansschlegelia sp. Dub [SIUB]
362433
362506
+
Gln
CTG
[ENA]
¡û
>W2011627436
SMAK01000015
Alphaproteobacteria
Tepidamorphus gemmatus DSM 19345 [SMAK]
10374
10301
-
Gln
CTG
[ENA]
¡û
>W2011676684
SRHQ01000025
Alphaproteobacteria
Methylorubrum sp. Q1 [SRHQ]
36126
36053
-
Gln
CTG
[ENA]
¡û
>W2012311069
WEKV01000008
Alphaproteobacteria
Methylorubrum populi Pinkel [WEKV]
592150
592223
+
Gln
CTG
[ENA]
¡û
>C201079729
CP039546
Alphaproteobacteria
Methylorubrum populi YC-XJ1 [CP039546]
4753065
4753138
+
Gln
CTG
-
¡û
>C201203453
CP047607
Alphaproteobacteria
Methylobacterium sp. NI91 [CP047607]
4669937
4670010
+
Gln
CTG
-
¡û
>C211388832
CP081869
Alphaproteobacteria
Chenggangzhangella methanolivorans CHL1 [CP081869]
4751191
4751118
-
Gln
CTG
-
¡û
>C231024555
AP025942
Alphaproteobacteria
Methylorubrum sp. GM97 [AP025942]
4700539
4700612
+
Gln
CTG
-
¡û
>W2110752812
NKUI01000064
Alphaproteobacteria
Methylorubrum zatmanii LMG 6087 [NKUI]
1537
1464
-
Gln
CTG
[ENA]
¡û
>C231527965
CP110130
Alphaproteobacteria
Methylorubrum extorquens NBC_00404 [CP110130]
4334174
4334247
+
Gln
CTG
-
¡û
>C241180464
CP073633
Alphaproteobacteria
Methylorubrum extorquens ATCC 55366 [CP073633]
5252764
5252837
+
Gln
CTG
-
¡û
>W2310013897
BPRC01000023
Alphaproteobacteria
Methylorubrum aminovorans NBRC 15686 [BPRC]
20705
20632
-
Gln
CTG
[ENA]
¡û
>W2310013928
BPRD01000177
Alphaproteobacteria
Methylorubrum podarium DSM 15083 [BPRD]
1512
1439
-
Gln
CTG
[ENA]
¡û
>W2310013982
BPRE01000013
Alphaproteobacteria
Methylorubrum suomiense DSM 14458 [BPRE]
4750
4823
+
Gln
CTG
[ENA]
¡û
>C161004976
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
4688027
4688100
+
Gln
CTG
[Ensembl]
¡û
>W121010654
AGJK01000001
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
34783
34710
-
Gln
CTG
[ENA]
¡û
>W121010673
AGJK01000058
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
25644
25717
+
Gln
CTG
[ENA]
¡û
>W1610043194
BAZP01002295
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
332
259
-
Gln
CTG
[ENA]
¡û
>W1610516207
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
2358918
2358991
+
Gln
CTG
[ENA]
¡û
>W1610516218
FMBM01000003
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
3669
3742
+
Gln
CTG
[ENA]
¡û
>W1610661222
LJSX01000007
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
138592
138665
+
Gln
CTG
[ENA]
¡û
>W1610735437
LMMN01000010
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
67235
67162
-
Gln
CTG
[ENA]
¡û
>W1610736676
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
47117
47044
-
Gln
CTG
[ENA]
¡û
>W1610736782
LMNP01000024
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
33977
33904
-
Gln
CTG
[ENA]
¡û
>W1610740635
LMQV01000007
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
114193
114120
-
Gln
CTG
[ENA]
¡û
>W1710040354
BAZP01002295
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
332
259
-
Gln
CTG
[ENA]
¡û
>W1710501509
FMBM01000003
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
3669
3742
+
Gln
CTG
[ENA]
¡û
>W1710607232
FWZX01000002
Alphaproteobacteria
Tistlia consotensis [FWZX]
329684
329611
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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