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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4767 (52 seq.)
>W1711705110
MSQD01000012
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
73789
73882
+
Ser
GCT
[ENA]
¡û
>W131051970
AMYG01000024
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
25724
25631
-
Ser
GCT
[ENA]
¡û
>W131167538
ARDJ01000001
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
74212
74305
+
Ser
GCT
[ENA]
¡û
>W131218752
ATXZ01000011
Bacillota
Caldanaerobius polysaccharolyticus DSM 13641 [ATXZ]
135752
135659
-
Ser
GCT
[ENA]
¡û
>w010172
AAKQ01000002
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
70006
70101
+
Ser
GCT
[ENA]
¡û
>W141092571
AVAF01000010
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
25057
25150
+
Ser
GCT
[ENA]
¡û
>WENV181226085
OFDK01000021
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
15601
15508
-
Ser
GCT
[ENA]
¢þ
>W141193952
AYSN01000004
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
25535
25442
-
Ser
GCT
[ENA]
¡û
>W141238354
BBKT01000043
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
6929
7022
+
Ser
GCT
[ENA]
¡û
>C08010928
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
33178
33271
+
Ser
GCT
[Ensembl]
¡û
>C08011028
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
33076
33169
+
Ser
GCT
[Ensembl]
¡û
>W141276494
JADV01000025
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
22301
22208
-
Ser
GCT
[ENA]
¡û
>WENV170675648
LDZP01000179
[LDZP] terrestrial metagenome; oil reservoir sample I1
27522
27615
+
Ser
GCT
[ENA]
¢þ
>WENV170676887
LDZS01003003
[LDZS] terrestrial metagenome; oil reservoir sample K3
1947
1854
-
Ser
GCT
[ENA]
¢þ
>C181021891
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
1190300
1190393
+
Ser
GCT
-
¡û
>C191108092
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
428314
428407
+
Ser
GCT
-
¡û
>W09133517
ACPF01000008
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
5883
5790
-
Ser
GCT
[ENA]
¡û
>W09134126
ACQZ01000007
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
12117
12024
-
Ser
GCT
[ENA]
¡û
>W09135014
ACVG01000048
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
11215
11122
-
Ser
GCT
[ENA]
¡û
>W09135052
ACVH01000021
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
14681
14588
-
Ser
GCT
[ENA]
¡û
>W09135177
ACVK01000036
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
4387
4294
-
Ser
GCT
[ENA]
¡û
>W09135853
ACXP01000013
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
10746
10653
-
Ser
GCT
[ENA]
¡û
>W1910747733
MINB01000027
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
8505
8412
-
Ser
GCT
[ENA]
¡û
>W1910976733
NKHD01000029
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
6006
5913
-
Ser
GCT
[ENA]
¡û
>C151045280
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
32164
32257
+
Ser
GCT
[Ensembl]
¡û
>W10105927
ACXY01000009
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
10844
10751
-
Ser
GCT
[ENA]
¡û
>W10120472
ADXD01000007
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
16384
16291
-
Ser
GCT
[ENA]
¡û
>C10113366
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
31702
31795
+
Ser
GCT
[Ensembl]
¡û
>C10113420
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
52319
52412
+
Ser
GCT
[Ensembl]
¡û
>C10113808
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
28979
29072
+
Ser
GCT
[Ensembl]
¡û
>W11108250
ACXY01000009
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
10844
10751
-
Ser
GCT
[ENA]
¡û
>W1511275107
JOOI01000002
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
409948
409855
-
Ser
GCT
[ENA]
¡û
>C11122455
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
33083
33176
+
Ser
GCT
[Ensembl]
¡û
>C11122686
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
33082
33175
+
Ser
GCT
[Ensembl]
¡û
>C11123217
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
31834
31927
+
Ser
GCT
[Ensembl]
¡û
>C11123274
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
28886
28979
+
Ser
GCT
[Ensembl]
¡û
>W11127081
ADXD01000007
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
16384
16291
-
Ser
GCT
[ENA]
¡û
>W11150447
AEVQ01000008
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
98784
98877
+
Ser
GCT
[ENA]
¡û
>W11152646
AEYS01000010
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
40038
39945
-
Ser
GCT
[ENA]
¡û
>C121007606
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
603903
603996
+
Ser
GCT
[Ensembl]
¡û
>W1610043678
BAZY01000032
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
22200
22107
-
Ser
GCT
[ENA]
¡û
>W121068091
AJUD01000008
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
302215
302308
+
Ser
GCT
[ENA]
¡û
>C131001895
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
29236
29329
+
Ser
GCT
[Ensembl]
¡û
>W1610612280
LGEO01000016
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
27522
27615
+
Ser
GCT
[ENA]
¡û
>W1610613183
LGFN01000107
Bacillota
Caldanaerobacter subterraneus [LGFN]
1947
1854
-
Ser
GCT
[ENA]
¡û
>W1710040838
BAZY01000032
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
22200
22107
-
Ser
GCT
[ENA]
¡û
>W1710515303
FNBS01000013
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
32430
32523
+
Ser
GCT
[ENA]
¡û
>W1710560353
FONI01000004
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
70823
70916
+
Ser
GCT
[ENA]
¡û
>W1710583315
FQUR01000013
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
69366
69459
+
Ser
GCT
[ENA]
¡û
>W1710584111
FQVH01000045
Bacillota
Caldanaerobius fijiensis DSM 17918 [FQVH]
9543
9636
+
Ser
GCT
[ENA]
¡û
>W1710733786
LGEO01000016
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
27522
27615
+
Ser
GCT
[ENA]
¡û
>W1710734390
LGFN01000107
Bacillota
Caldanaerobacter subterraneus [LGFN]
1947
1854
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK